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#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Drosophila melanogaster (fruit fly)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        Dmel_CG1554 Polr2A; RNA polymerase II subunit A	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        Dmel_CG3180 Polr2B; RNA polymerase II subunit B, isoform B	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        Dmel_CG7885 Polr2C; RNA polymerase II subunit C	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        Dmel_CG6840 Polr2J; RNA polymerase II subunit J	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        Dmel_CG43662 Polr2D; RNA polymerase II subunit D	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        Dmel_CG31155 Polr2G; RNA polymerase II subunit G	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        Dmel_CG3284 Polr2I; RNA polymerase II subunit I, isoform B	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        Dmel_CG3773 Polr2M; RNA polymerase II subunit M	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
D      Pol I, II, III common subunits
E        Dmel_CG11979 Polr2E; RNA polymerase II, I and III subunit E, isoform B	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        Dmel_CG1163 Polr2F; RNA polymerase II, I and III subunit F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        Dmel_CG11246 Polr2H; RNA polymerase II, I and III subunit H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        Dmel_CG34186 Polr2K; RNA polymerase II, I and III subunit K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        Dmel_CG13628 Polr2L; RNA polymerase II, I and III subunit L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        Dmel_CG5930 TfIIA-L; transcription factor IIA L, isoform A	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        Dmel_CG11639 TfIIA-S-2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
E        Dmel_CG5163 TfIIA-S; Transcription-factor-IIA-S	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        Dmel_CG5193 TfIIB; transcription factor IIB, isoform B	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        Dmel_CG7562 Trf; TBP-related factor	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG9874 Tbp; TATA binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG18009 Trf2; TATA box binding protein-related factor 2, isoform E	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG17603 Taf1; TBP-associated factor 1, isoform B	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        Dmel_CG6711 Taf2; TBP-associated factor 2, isoform B	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        Dmel_CG2009 Taf3; TBP-associated factor 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        Dmel_CG5444 Taf4; TBP-associated factor 4, isoform F	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        Dmel_CG6577 can; cannonball	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Dmel_CG7704 Taf5; TBP-associated factor 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Dmel_CG4448 wda; will decrease acetylation	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Dmel_CG32211 Taf6; TBP-associated factor 6, isoform A	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Dmel_CG10390 mia; meiosis I arrest, isoform B	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Dmel_CG2670 Taf7; TBP-associated factor 7, isoform A	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        Dmel_CG7128 Taf8; TBP-associated factor 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        Dmel_CG11308 sa; spermatocyte arrest	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        Dmel_CG6474 Taf9; TBP-associated factor 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        Dmel_CG2859 Taf10; TBP-associated factor 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        Dmel_CG3069 Taf10b; TBP-associated factor 10b	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        Dmel_CG4079 Taf11; TBP-associated factor 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        Dmel_CG17358 Taf12; TBP-associated factor 12, isoform A	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        Dmel_CG15632 Taf12L; TBP-associated factor 30kD subunit alpha-2	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        Dmel_CG10756 Taf13; TBP-associated factor 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        Dmel_CG10415 TfIIEalpha; transcription factor IIEalpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        Dmel_CG1276 TfIIEbeta; transcription factor IIEbeta, isoform B	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        Dmel_CG10281 TfIIFalpha; transcription factor IIFalpha	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        Dmel_CG6538 TfIIFbeta; transcription factor TFIIFbeta	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        Dmel_CG8151 Tfb1; transcription factor B1, isoform D	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        Dmel_CG11115 Ssl1; suppressor of stem-loop mutation, isoform B	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        Dmel_CG5041 Tfb4; transcription factor B4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        Dmel_CG7764 mrn; marionette	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        Dmel_CG8019 hay; haywire, isoform B	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        Dmel_CG9433 Xpd; xeroderma pigmentosum D	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        Dmel_CG42373 Tfb5; transcription factor B5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        Dmel_CG3319 Cdk7; Cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        Dmel_CG7614 Mat1; menage a trois 1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        Dmel_CG7405 CycH; cyclin H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        Dmel_CG9473 MED6; mediator complex subunit 6, isoform C	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        Dmel_CG13867 MED8; mediator complex subunit 8	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        Dmel_CG6884 MED11; mediator complex subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        Dmel_CG7957 MED17; mediator complex subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        Dmel_CG14802 MED18; mediator complex subunit 18, isoform A	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        Dmel_CG5546 MED19; mediator complex subunit 19, isoform B	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        Dmel_CG18780 MED20; mediator complex subunit 20, isoform A	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        Dmel_CG3034 MED22; mediator complex subunit 22	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        Dmel_CG32971 CG32971; uncharacterized protein, isoform B	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        Dmel_CG5121 MED28; mediator complex subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        Dmel_CG13201 ix; intersex	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        Dmel_CG17183 MED30; mediator complex subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        Dmel_CG7162 MED1; mediator complex subunit 1, isoform A	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        Dmel_CG8609 MED4; mediator complex subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        Dmel_CG31390 MED7; mediator complex subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        Dmel_CG42517 MED9; mediator complex subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        Dmel_CG42518 CG42518; uncharacterized protein, isoform A	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        Dmel_CG5057 MED10; mediator complex subunit 10, isoform C	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        Dmel_CG17397 MED21; mediator complex subunit 21, isoform A	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        Dmel_CG1057 MED31; mediator complex subunit 31, isoform C	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        Dmel_CG12031 MED14; mediator complex subunit 14, isoform A	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        Dmel_CG4184 MED15; mediator complex subunit 15	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        Dmel_CG5465 MED16; mediator complex subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        Dmel_CG10572 Cdk8; Cyclin-dependent kinase 8	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        Dmel_CG7281 CycC; cyclin C	K15161 CCNC; cyclin-C 
E        Dmel_CG8491 kto; kohtalo, isoform A	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        Dmel_CG9936 skd; skuld, isoform D	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        Dmel_CG3695 MED23; mediator complex subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        Dmel_CG7999 MED24; mediator complex subunit 24	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        Dmel_CG12254 MED25; mediator complex subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        Dmel_CG1793 MED26; mediator complex subunit 26, isoform A	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        Dmel_CG1245 MED27; mediator complex subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        Dmel_CG4107 Gcn5; Gcn5 acetyltransferase	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        Dmel_CG33554 Nipped-A; Nipped-A, isoform E	K08874 TRRAP; transformation/transcription domain-associated protein 
E        Dmel_CG3169 Spt3; Spt3	K11313 SUPT3H; transcription initiation protein SPT3 
E        Dmel_CG43663 Ada2a; transcriptional adaptor 2a, isoform B	K11314 TADA2A; transcriptional adapter 2-alpha 
E        Dmel_CG9638 Ada2b; transcriptional adaptor 2b, isoform B	K15127 TADA2B; transcriptional adapter 2-beta 
E        Dmel_CG7098 Ada3; transcriptional adaptor 3, isoform C	K11315 TADA3; transcriptional adapter 3 
E        Dmel_CG31865 Ada1-1; transcriptional adaptor 1-1, isoform B	K11317 TADA1; transcriptional adapter 1 
E        Dmel_CG31866 Ada1-2; transcriptional adaptor 1-2	K11317 TADA1; transcriptional adapter 1 
E        Dmel_CG6711 Taf2; TBP-associated factor 2, isoform B	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        Dmel_CG5444 Taf4; TBP-associated factor 4, isoform F	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        Dmel_CG6577 can; cannonball	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Dmel_CG7704 Taf5; TBP-associated factor 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Dmel_CG4448 wda; will decrease acetylation	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Dmel_CG32211 Taf6; TBP-associated factor 6, isoform A	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Dmel_CG10390 mia; meiosis I arrest, isoform B	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Dmel_CG2670 Taf7; TBP-associated factor 7, isoform A	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        Dmel_CG6474 Taf9; TBP-associated factor 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        Dmel_CG2859 Taf10; TBP-associated factor 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        Dmel_CG3069 Taf10b; TBP-associated factor 10b	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        Dmel_CG17358 Taf12; TBP-associated factor 12, isoform A	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        Dmel_CG15632 Taf12L; TBP-associated factor 30kD subunit alpha-2	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        Dmel_CG13379 Sgf11; SAGA associated factor 11kDa	K11363 SGF11; SAGA-associated factor 11 
E        Dmel_CG30390 Sgf29; SAGA-associated factor 29kDa, isoform B	K11364 SGF29; SAGA-associated factor 29 
E        Dmel_CG6506 Spt7; Spt7	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        Dmel_CG3733 Chd1; Chromodomain-helicase-DNA-binding protein 1, isoform A	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        Dmel_CG15191 e(y)2; enhancer of yellow 2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        Dmel_CG14612 e(y)2b; enhancer of yellow 2b, isoform B	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        Dmel_CG4166 not; non-stop, isoform C	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        Dmel_CG13900 Sf3b3; splicing factor 3b subunit 3, isoform A	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        Dmel_CG5942 brm; brahma, isoform A	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        Dmel_CG1064 Snr1; Snf5-related 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        Dmel_CG18740 mor; moira, isoform B	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        Dmel_CG4303 Bap60; brahma associated protein 60kD	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        Dmel_CG7055 Bap111; brahma associated protein 111kD	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        Dmel_CG4027 Act5C; actin 5C, isoform D	K05692 ACTB_G1; actin beta/gamma 1 
E        Dmel_CG12051 Act42A; actin 42A	K05692 ACTB_G1; actin beta/gamma 1 
E        Dmel_CG6546 Bap55; brahma associated protein 55kD	K11652 ACTL6B; actin-like protein 6B 
E        Dmel_CG7467 osa; osa, isoform D	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        Dmel_CG3274 Bap170; brahma associated protein 170kD	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        Dmel_CG11375 polybromo	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        Dmel_CG1064 Snr1; Snf5-related 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        Dmel_CG8396 Ssb-c31a; single stranded-binding protein c31A	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        Dmel_CG3710 TfIIS; RNA polymerase II elongation factor, isoform B	K03145 TFIIS; transcription elongation factor S-II 
E        Dmel_CG8117 CG8117; uncharacterized protein	K03145 TFIIS; transcription elongation factor S-II 
E        Dmel_CG12372 spt4; spt4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        Dmel_CG7626 Spt5; Spt5	K15172 SUPT5H; transcription elongation factor SPT5 
E        Dmel_CG12225 Spt6; Spt6, isoform B	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        Dmel_CG2684 lds; lodestar	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        Dmel_CG10445 CG10445; uncharacterized protein, isoform D	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        Dmel_CG10228 Pcf11; Pcf11 cleavage and polyadenylation factor subunit, isoform B	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        Dmel_CG10110 Cpsf160; cleavage and polyadenylation specificity factor 160, isoform A	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        Dmel_CG7698 Cpsf73; cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        Dmel_CG3642 Clp; clipper	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        Dmel_CG2096 flw; flapwing, isoform C	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG5650 Pp1-87B; protein phosphatase 1 at 87B	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG6593 Pp1alpha-96A; protein phosphatase 1alpha at 96A, isoform B	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG9156 Pp1-13C; protein phosphatase 1 at 13C	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG3245 PpN58A; protein phosphatase N at 58A	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG41534 Pp1-Y1; protein phosphatase 1, Y-linked 1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG10138 PpD5; protein phosphatase D5	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG8822 PpD6; protein phosphatase D6	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG40448 Pp1-Y2; protein phosphatase 1, Y-linked 2	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG10930 PpY-55A; protein phosphatase Y at 55A, isoform B	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Dmel_CG2097 Sym; symplekin	K06100 SYMPK; symplekin 
E        Dmel_CG14216 Ssu72; Ssu72 CTD phosphatase, isoform B	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        Dmel_CG10354 Rat1; Rat1 5'-3' exoribonuclease, isoform B	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        Dmel_CG9125 Rai1; Rat1 interacting protein 1	K14845 RAI1; RAT1-interacting protein 
E        Dmel_CG9018 CG9018; uncharacterized protein, isoform A	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        Dmel_CG4211 nonA; no on or off transient A, isoform D	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        Dmel_CG10328 nonA-l; nonA-like, isoform B	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        Dmel_CG4266 Isha; insulator su(Hw) mRNA adaptor, isoform B	K13191 RBM16; RNA-binding protein 16 
E        Dmel_CG7504 Setx; senataxin, isoform B	K10706 SETX; ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] 
E        Dmel_CG17051 dod; dodo	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        Dmel_CG2503 atms; antimeros, isoform B	K15174 PAF1; RNA polymerase II-associated factor 1 
E        Dmel_CG12674 CG12674; uncharacterized protein, isoform B	K15174 PAF1; RNA polymerase II-associated factor 1 
E        Dmel_CG6220 CG6220; uncharacterized protein	K15175 CDC73; parafibromin 
E        Dmel_CG11990 hyx; hyrax, isoform B	K15175 CDC73; parafibromin 
E        Dmel_CG9899 CG9899; uncharacterized protein	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        Dmel_CG2469 Ctr9; Ctr9, isoform A	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        Dmel_CG1433 Atu; another transcription unit	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        Dmel_CG10887 CG10887; uncharacterized protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        Dmel_CG10955 Rtf1; Rtf1, isoform B	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        Dmel_CG31703 tplus3b; testis-specific Plus3 domain b	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        Dmel_CG31702 tplus3a; testis-specific Plus3 domain a	K15178 RTF1; RNA polymerase-associated protein RTF1 
E        Dmel_CG12498 CG12498; uncharacterized protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        Dmel_CG5874 Nelf-A; negative elongation factor A, isoform A	K15179 WHSC2; negative elongation factor A 
E        Dmel_CG32721 NELF-B; NELF-B	K15180 COBRA1; negative elongation factor B 
E        Dmel_CG9984 TH1; TH1, isoform B	K15181 TH1L; negative elongation factor C/D 
E        Dmel_CG5994 Nelf-E; negative elongation factor E	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        Dmel_CG32217 Su(Tpl); suppressor of triplolethal, isoform B	K15183 ELL; RNA polymerase II elongation factor ELL 
E        Dmel_CG11166 Eaf; ELL-associated factor, isoform D	K15186 EAF; ELL-associated factor 
E        Dmel_CG4913 ear; ENL/AF9-related, isoform B	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        Dmel_CG6292 CycT; cyclin T, isoform C	K15188 CCNT; cyclin T 
E        Dmel_CG5179 Cdk9; Cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        Dmel_CG32217 Su(Tpl); suppressor of triplolethal, isoform B	K15183 ELL; RNA polymerase II elongation factor ELL 
D      Brd4/P-TEFb complex
E        Dmel_CG6292 CycT; cyclin T, isoform C	K15188 CCNT; cyclin T 
E        Dmel_CG5179 Cdk9; Cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        Dmel_CG3508 Hexim; hexamethylene bisacetamide inducible, isoform A	K15189 HEXIM1_2; protein HEXIM1/2 
E        Dmel_CG8276 bin3; bicoid-interacting protein 3, isoform C	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        Dmel_CG1239 CG1239; uncharacterized protein, isoform B	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        Dmel_CG42569 Larp7; La related protein 7	K15191 LARP7; La-related protein 7 
E        Dmel_CG6292 CycT; cyclin T, isoform C	K15188 CCNT; cyclin T 
E        Dmel_CG5179 Cdk9; Cyclin-dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        Dmel_CG4261 Hel89B; helicase 89B, isoform C	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        Dmel_CG4185 NC2beta; negative cofactor 2beta	K21751 DR1; down-regulator of transcription 1 
E        Dmel_CG10318 NC2alpha; negative cofactor 2alpha	K21752 DRAP1; Dr1-associated corepressor 
E        Dmel_CG5815 CG5815; uncharacterized protein, isoform A	K15193 SPTY2D1; protein SPT2 
E        Dmel_CG8817 lilli; lilliputian, isoform G	K15194 AFF2; AF4/FMR2 family member 2 
E        Dmel_CG12252 Fcp1; TFIIF-interacting CTD phosphatase, isoform B	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        Dmel_CG5830 hzg; herzog, isoform B	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        Dmel_CG9915 CG9915; uncharacterized protein, isoform B	K17498 SPN1; transcription factor SPN1 
E        Dmel_CG4272 Axud1; AXIN1 up-regulated 1, isoform C	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        Dmel_CG32104 CG32104; uncharacterized protein	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        Dmel_CG34183 CG34183; uncharacterized protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        Dmel_CG13570 spag; spaghetti	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        Dmel_CG15218 CycK; cyclin K, isoform C	K23326 CCNK; cyclin K 
E        Dmel_CG10222 CG10222; uncharacterized protein, isoform B	K24104 GPN; GPN-loop GTPase 
E        Dmel_CG2656 CG2656; uncharacterized protein	K24104 GPN; GPN-loop GTPase 
E        Dmel_CG3704 CG3704; uncharacterized protein	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        Dmel_CG17209 Polr3A; RNA polymerase III subunit A	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        Dmel_CG8344 Polr3B; RNA polymerase III subunit B	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        Dmel_CG3756 Polr1C; RNA polymerase I and III subunit C	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        Dmel_CG10685 Polr1D; RNA polymerase I and III subunit D, isoform A	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        Dmel_CG12267 Polr3C; RNA polymerase III subunit C, isoform B	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        Dmel_CG5147 Polr3D; RNA polymerase III subunit D	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        Dmel_CG10582 Polr3E; RNA polymerase III subunit E, isoform C	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        Dmel_CG5380 Polr3F; RNA polymerase III subunit F, isoform B	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        Dmel_CG33051 Polr3G; RNA polymerase III subunit G	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        Dmel_CG7339 Polr3H; RNA polymerase III subunit H, isoform B	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        Dmel_CG4875 Polr3I; RNA polymerase III subunit I, isoform C	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        Dmel_CG33785 Polr3K; RNA polymerase III subunit K	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        Dmel_CG11979 Polr2E; RNA polymerase II, I and III subunit E, isoform B	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        Dmel_CG1163 Polr2F; RNA polymerase II, I and III subunit F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        Dmel_CG11246 Polr2H; RNA polymerase II, I and III subunit H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        Dmel_CG34186 Polr2K; RNA polymerase II, I and III subunit K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        Dmel_CG13628 Polr2L; RNA polymerase II, I and III subunit L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        Dmel_CG9609 CG9609; uncharacterized protein	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        Dmel_CG7562 Trf; TBP-related factor	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG9874 Tbp; TATA binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG18009 Trf2; TATA box binding protein-related factor 2, isoform E	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG31256 Brf; Brf RNA polymerase III subunit, isoform B	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        Dmel_CG9305 Bdp1; B double prime 1, isoform B	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        Dmel_CG7099 CG7099; uncharacterized protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        Dmel_CG42588 CG42588; uncharacterized protein, isoform B	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        Dmel_CG8950 CG8950; uncharacterized protein, isoform B	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        Dmel_CG12182 CG12182; uncharacterized protein, isoform B	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        Dmel_CG10563 l(2)37Cd; lethal (2) 37Cd	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        Dmel_CG42516 CG42516; uncharacterized protein, isoform A	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        Dmel_CG10563 l(2)37Cd; lethal (2) 37Cd	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        Dmel_CG8950 CG8950; uncharacterized protein, isoform B	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        Dmel_CG9597 Pbp45; PSEA-binding protein 45kD	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        Dmel_CG42515 Pbp49; PSEA-binding protein 49kD, isoform D	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
E        Dmel_CG12287 pdm2; POU domain protein 2, isoform C	K09364 POU2F; POU domain transcription factor, class 2 
E        Dmel_CG34395 nub; nubbin, isoform E	K09364 POU2F; POU domain transcription factor, class 2 
D      Others
E        Dmel_CG40196 Maf1; Maf1, isoform A	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        Dmel_CG10122 Polr1A; RNA polymerase I subunit A	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        Dmel_CG4033 Polr1B; RNA polymerase I subunit B	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        Dmel_CG3756 Polr1C; RNA polymerase I and III subunit C	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        Dmel_CG10685 Polr1D; RNA polymerase I and III subunit D, isoform A	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        Dmel_CG18600 Polr1E; RNA polymerase I subunit E	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        Dmel_CG13773 Polr1F; RNA polymerase I subunit F	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        Dmel_CG13418 Polr1H; RNA polymerase I subunit H	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        Dmel_CG11979 Polr2E; RNA polymerase II, I and III subunit E, isoform B	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        Dmel_CG1163 Polr2F; RNA polymerase II, I and III subunit F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        Dmel_CG11246 Polr2H; RNA polymerase II, I and III subunit H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        Dmel_CG34186 Polr2K; RNA polymerase II, I and III subunit K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        Dmel_CG13628 Polr2L; RNA polymerase II, I and III subunit L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        Dmel_CG7562 Trf; TBP-related factor	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG9874 Tbp; TATA binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG18009 Trf2; TATA box binding protein-related factor 2, isoform E	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Dmel_CG6241 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B, isoform C	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        Dmel_CG3278 Tif-IA; Tif-IA	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        Dmel_CG1240 Non2; putative nucleolar protein 2	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        Dmel_CG12372 spt4; spt4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        Dmel_CG7626 Spt5; Spt5	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        Dmel_CG8625 Iswi; imitation SWI, isoform A	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        Dmel_CG7421 Nopp140; Nopp140, isoform F	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        Dmel_CG5193 TfIIB; transcription factor IIB, isoform B	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        Dmel_CG10415 TfIIEalpha; transcription factor IIEalpha	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024