+E Transcription factors KO
#
Transcription Factors - Escherichia coli SMS-3-5 (environmental)
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D EcSMS35_4319 DNA-cytosine methyltransferase family protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D EcSMS35_1224 dcm; DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D EcSMS35_0066 araC; arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D EcSMS35_4299 rhaR; transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D EcSMS35_4297 rhaS; HTH-type transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D EcSMS35_1456 chbR; transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D EcSMS35_4581 adiY; transcriptional regulator AdiY K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA
D EcSMS35_2592 putative transcriptional regulator EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D EcSMS35_0583 transcriptional regulator, AraC family K11920 envY; AraC family transcriptional regulator
D EcSMS35_4524 soxS; regulatory protein SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EcSMS35_1639 marA; multiple antibiotic resistance protein MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EcSMS35_4946 rob; right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D EcSMS35_0337 transcriptional regulator, AraC family K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon
D EcSMS35_3818 gadW; transcriptional regulator GadW K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D EcSMS35_3819 gadX; transcriptional regulator GadX K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D EcSMS35_4584 melR; melibiose operon regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D EcSMS35_1402 transcriptional regulator, AraC family K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D EcSMS35_2362 ada; regulatory protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D EcSMS35_2949 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D EcSMS35_4138 ilvY; transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D EcSMS35_0018 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D EcSMS35_4409 oxyR; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D EcSMS35_3052 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D EcSMS35_0081 leuO; transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D EcSMS35_2690 hcaR; Hca operon transcriptional activator K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D EcSMS35_3414 tdcA; transcriptional regulator TdcA K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D EcSMS35_0547 transcriptional regulator, LysR family K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D EcSMS35_0369 cynR; transcriptional regulator cynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D EcSMS35_1856 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D EcSMS35_1137 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D EcSMS35_2514 dsdC; D-serine deaminase transcriptional activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D EcSMS35_1783 abgR; transcriptional regulator AbgR K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D EcSMS35_1389 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D EcSMS35_1136 nac; nitrogen assimilation regulatory protein Nac K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D EcSMS35_4870 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D EcSMS35_1091 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D EcSMS35_3539 aaeR; transcriptional activator AaeR K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D EcSMS35_3353 ttdR; HTH-type transcriptional activator TtdR K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon
D EcSMS35_4131 hdfR; transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D EcSMS35_1793 transcriptional regulator, LysR family K24082 pgrR; LysR family transcriptional regulator, regulator of peptidoglycan recycling
C DeoR family
D EcSMS35_0867 deoR; deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D EcSMS35_3702 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D EcSMS35_0974 gatR; galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor
D EcSMS35_3428 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D EcSMS35_2946 fucR; L-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D EcSMS35_2830 srlR; glucitol operon repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D EcSMS35_4661 ulaR; transcriptional regulator UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D EcSMS35_4269 transcriptional regulator, DeoR/GntR family K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor
C LacI family
D EcSMS35_0376 lacI; lactose operon repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D EcSMS35_4122 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EcSMS35_3113 rafR; HTH-type transcriptional regulator RafR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EcSMS35_2298 galS; transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EcSMS35_3892 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EcSMS35_2985 galR; transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EcSMS35_1104 periplasmic sugar binding transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D EcSMS35_4376 cytR; transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D EcSMS35_0085 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D EcSMS35_2909 scrR; sucrose operon repressor K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D EcSMS35_4722 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D EcSMS35_2838 ascG; transcriptional regulator AscG K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D EcSMS35_1538 purR; transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D EcSMS35_3721 gntR; transcriptional regulator GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D EcSMS35_4745 idnR; transcriptional regulator IdnR K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D EcSMS35_3369 ebgR; HTH-type transcriptional regulator EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D EcSMS35_1579 malI; maltose regulon regulatory protein MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D EcSMS35_1632 transcriptional regulator, GntR family K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D EcSMS35_4049 transcriptional regulator, GntR family K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D EcSMS35_4568 phnF; phosphonates metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D EcSMS35_1962 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D EcSMS35_0123 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D EcSMS35_1120 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D EcSMS35_3258 glcC; Glc operon transcriptional activator K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D EcSMS35_4851 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D EcSMS35_3301 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D EcSMS35_3391 exuR; Exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D EcSMS35_3941 putative L-lactate dehydrogenase operon regulatory protein LldR K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D EcSMS35_1098 dgoR_2; galactonate operon transcriptional repressor K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D EcSMS35_4060 dgoR_1; galactonate operon transcriptional repressor K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D EcSMS35_3521 nanR; transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D EcSMS35_2793 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D EcSMS35_1721 transcriptional regulator, GntR family K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator
D EcSMS35_2784 csiR; gab operon transcriptional repressor CsiR K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D EcSMS35_1625 transcriptional regulator, GntR family K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D EcSMS35_4902 transcriptional regulator, GntR family K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D EcSMS35_A0152 tetR; tetracycline repressor protein, class A K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D EcSMS35_0344 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D EcSMS35_0507 acrR; transcriptional regulator AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D EcSMS35_3976 transcriptional regulator domain protein, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D EcSMS35_2112 rutR; transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D EcSMS35_1549 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D EcSMS35_1581 uidR; transcriptional regulator UidR K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D EcSMS35_3559 putative transcriptional regulator EnvR K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D EcSMS35_4730 transcriptional regulator, TetR family K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA
D EcSMS35_2015 transcriptional regulator, TetR family K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D EcSMS35_4410 fabR; fatty acid biosynthesis regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D EcSMS35_0819 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D EcSMS35_0873 transcriptional regulator, TetR family K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D EcSMS35_4111 asnC; regulatory protein AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D EcSMS35_2231 lrp; leucine responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D EcSMS35_0490 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D EcSMS35_1266 sdiA; regulatory protein SdiA K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D EcSMS35_0320 matA; fimbrillin MatA K21963 ecpR; LuxR family transcriptional regulator, Mat/Ecp fimbriae transcriptional regulator
D EcSMS35_1233 rcsA; colanic acid capsular biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D EcSMS35_2093 csgD; transcriptional regulator CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D EcSMS35_3800 dctR; transcriptional regulator DctR K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator
D EcSMS35_4912 transcriptional regulator, LuxR family K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D EcSMS35_3699 malT; maltose regulon activator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D EcSMS35_3814 gadE; transcriptional regulator GadE K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator
C MarR family
D EcSMS35_1640 marR; multiple antibiotic resistance protein MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D EcSMS35_1557 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D EcSMS35_2806 mprA; transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D EcSMS35_2865 transcriptional regulator, MarR family K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
C MerR family
D EcSMS35_0530 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D EcSMS35_3587 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D EcSMS35_4525 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D EcSMS35_0917 transcriptional regulator MlrA K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D EcSMS35_1987 mlrA; transcriptional regulator mlrA K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D EcSMS35_0705 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D EcSMS35_4508 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D EcSMS35_4471 iclR; acetate operon repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D EcSMS35_0377 mhpR; Mhp operon transcriptional activator K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D EcSMS35_0549 allR; transcriptional regulator AllR K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons
D EcSMS35_1360 kdgR; transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D EcSMS35_3897 transcriptional regulator, IclR family K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D EcSMS35_3639 crp; catabolite gene activator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D EcSMS35_1788 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D EcSMS35_2310 nsr; regulatory protein Nsr K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D EcSMS35_2684 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D EcSMS35_4649 nsrR; transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D EcSMS35_3793 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D EcSMS35_1740 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D EcSMS35_0841 mntR; transcriptional regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D EcSMS35_4555 rpiR; HTH-type transcriptional regulator RpiR (Als operon repressor) K23238 rpiR; RpiR family transcriptional regulator, repressor of rpiB and als operon
D EcSMS35_2582 transcriptional regulator, RpiR family K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D EcSMS35_1333 transcriptional regulator, rpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D EcSMS35_4421 birA; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D EcSMS35_3556 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D EcSMS35_4945 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D EcSMS35_0361 prpR; propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D EcSMS35_3484 sfsB; sugar fermentation stimulation protein B K07724 ner; Ner family transcriptional regulator
D EcSMS35_0074 sgrR; sugar transport-related sRNA regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D EcSMS35_4939 nadR; nicotinamide-nucleotide adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D EcSMS35_1823 puuR; transcriptional regulator PuuR K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D EcSMS35_2638 hyfR; hydrogenase-4 transcriptional regulator K12146 hyfR; hydrogenase-4 transcriptional activator
D EcSMS35_2831 norR; anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D EcSMS35_2856 fhlA; formate hydrogenlyase transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D EcSMS35_0174 cdaR; carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D EcSMS35_0784 modE; transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
D EcSMS35_2857 molybdenum-pterin binding protein K02019 modE; molybdate transport system regulatory protein
D EcSMS35_4027 putative DNA-binding protein K07726 K07726; putative transcriptional regulator
D EcSMS35_3876 conserved hypothetical protein K07726 K07726; putative transcriptional regulator
D EcSMS35_3684 conserved hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D EcSMS35_3765 nikR; nickel-responsive transcriptional regulator NikR K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D EcSMS35_4380 metJ; met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D EcSMS35_2111 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D EcSMS35_4715 relB; addiction module antitoxin RelB K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D EcSMS35_2962 putative transcriptional antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D EcSMS35_4287 putative PTS system, IIA component K18531 frvR; putative frv operon regulatory protein
C Others
D EcSMS35_0388 conserved hypothetical protein K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D EcSMS35_0938 rcnR; transcriptional repressor RcnR K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D EcSMS35_0477 protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D EcSMS35_A0054 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EcSMS35_A0072 sopB; plasmid partition protein SopB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D EcSMS35_4222 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D EcSMS35_3533 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D EcSMS35_0696 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D EcSMS35_1606 mic; transcriptional regulator Mic K15545 mlc; transcriptional regulator of PTS gene
D EcSMS35_3934 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D EcSMS35_1799 tyrR; transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D EcSMS35_4602 cadC; transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D EcSMS35_4023 putative transcriptional regulator HilA K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1
D EcSMS35_2626 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D EcSMS35_1819 pspF; sigma-54 dependent transcriptional regulator PspF K03974 pspF; psp operon transcriptional activator
D EcSMS35_1816 pspC; phage shock protein C K03973 pspC; phage shock protein C
D EcSMS35_1660 lsrR; transcriptional repressor LsrR K11531 lsrR; lsr operon transcriptional repressor
D EcSMS35_1940 dhaR; PTS-dependent dihydroxyacetone kinase operon regulatory protein DhaR K05880 dhaR; transcriptional activator for dhaKLM operon
D EcSMS35_4867 putative regulatory protein IbeR K05880 dhaR; transcriptional activator for dhaKLM operon
D EcSMS35_0629 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D EcSMS35_4006 transcriptional regulator, AlpA family K07733 alpA; prophage regulatory protein
D EcSMS35_0941 transcriptional regulator, AlpA family K07733 alpA; prophage regulatory protein
D EcSMS35_1076 prophage CP4-57 regulatory protein AlpA K07733 alpA; prophage regulatory protein
D EcSMS35_3196 transcriptional regulator, AlpA family K07733 alpA; prophage regulatory protein
D EcSMS35_4782 transcriptional regulator, AlpA family K07733 alpA; prophage regulatory protein
D EcSMS35_3090 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D EcSMS35_0035 caiF; transcriptional activatory protein CaiF K08277 caiF; transcriptional activator CaiF
D EcSMS35_0156 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D EcSMS35_0449 nrdR; transcriptional regulator, NrdR family K07738 nrdR; transcriptional repressor NrdR
D EcSMS35_0294 crl; sigma factor-binding protein Crl K11926 crl; sigma factor-binding protein Crl
D EcSMS35_3703 rtcR; sigma-54 dependent transcriptional regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D EcSMS35_1159 repressor protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D EcSMS35_0086 mraZ; MraZ protein K03925 mraZ; transcriptional regulator MraZ
D EcSMS35_3312 transcription activator effector binding domain/DNA gyrase inhibitor domain protein K07471 ygiV; probable transcriptional regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0