+E Transcription factors KO
#
Transcription Factors - Escherichia coli O104:H4 2011C-3493 (EAEC)
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D O3K_09830 DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D O3K_21235 DNA-binding transcriptional regulator AraC K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D O3K_24330 transcriptional activator RhaR K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D O3K_24335 transcriptional activator RhaS K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D O3K_11290 DNA-binding transcriptional regulator ChbR K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D O3K_23295 AraC family transcriptional regulator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA
D O3K_07220 transcriptional regulator EutR K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D O3K_09710 AraC family transcriptional regulator K05372 ybtA; AraC family transcriptional regulator
D O3K_18815 DNA-binding transcriptional activator EnvY of porin biosynthesis K11920 envY; AraC family transcriptional regulator
D O3K_23540 DNA-binding transcriptional regulator SoxS K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D O3K_12820 DNA-binding transcriptional activator MarA K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D O3K_21565 right oriC-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D O3K_13550 DNA-binding transcriptional activator FeaR K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D O3K_19970 DNA-binding transcriptional regulator, ARAC-type K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon
D O3K_01325 DNA-binding transcriptional activator GadW K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D O3K_26097 putative transcriptional activator aggR (AAF-III) regulatory protein K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D O3K_01320 DNA-binding transcriptional regulator GadX K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D O3K_23285 DNA-binding transcriptional regulator MelR K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D O3K_11010 putative DNA-binding transcriptional regulator, ARAC-type K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D O3K_08380 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D O3K_05455 DNA-binding transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D O3K_25000 DNA-binding transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D O3K_24715 DNA-binding transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D O3K_21455 nhaR; transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D O3K_24015 DNA-binding transcriptional regulator OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D O3K_04895 chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D O3K_21170 leuO; leucine transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D O3K_06730 DNA-binding transcriptional regulator HcaR K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D O3K_03350 DNA-binding transcriptional activator TdcA K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D O3K_18975 DNA-binding transcriptional activator AllS K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D O3K_19785 DNA-binding transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D O3K_13980 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D O3K_09630 cbl; transcriptional regulator Cbl K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D O3K_13630 putative DNA-binding transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D O3K_10955 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D O3K_09625 nitrogen assimilation transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D O3K_15620 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D O3K_21890 cell density-dependent motility repressor K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D O3K_02750 transcriptional regulator K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D O3K_03650 transcriptional activator TtdR K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon
D O3K_25040 transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D O3K_13685 LysR family transcriptional regulator K24082 pgrR; LysR family transcriptional regulator, regulator of peptidoglycan recycling
C DeoR family
D O3K_22145 transcriptional regulator K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D O3K_17145 DNA-binding transcriptional repressor DeoR K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D O3K_01950 DNA-binding transcriptional repressor GlpR K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D O3K_09000 galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor
D O3K_03290 DNA-binding transcriptional regulator AgaR K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D O3K_05470 DNA-binding transcriptional activator FucR K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D O3K_06040 srlR; DNA-binding transcriptional repressor SrlR K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D O3K_22685 transcriptional repressor UlaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D O3K_24505 DEOR-type transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor
C LacI family
D O3K_19750 lacI; lac repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D O3K_08690 DNA-binding transcriptional regulator GalS K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D O3K_05325 DNA-binding transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D O3K_01015 DNA-binding transcriptional activator, xylose-binding protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D O3K_25055 transcriptional repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D O3K_24195 DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D O3K_21155 DNA-binding transcriptional regulator FruR K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D O3K_22435 treR; trehalose repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D O3K_06005 transcriptional regulator K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D O3K_11935 DNA-binding transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D O3K_01865 gluconate operon transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D O3K_22320 DNA-binding transcriptional repressor, 5-gluconate-binding protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D O3K_03580 DNA-binding transcriptional repressor EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D O3K_12135 DNA-binding transcriptional repressor MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D O3K_00100 putative DNA-binding transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D O3K_12785 transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D O3K_23360 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D O3K_02195 DNA-binding transcriptional regulator FrlR K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D O3K_17995 DNA-binding transcriptional repressor MngR K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D O3K_14725 fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D O3K_21000 pdhR; transcriptional regulator PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D O3K_04055 DNA-binding transcriptional regulator GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D O3K_21905 DNA-binding transcriptional repressor UxuR K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D O3K_03465 DNA-binding transcriptional repressor ExuR K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D O3K_00805 DNA-binding transcriptional repressor LldR K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D O3K_00045 putative DNA-binding transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D O3K_02835 transcriptional regulator NanR K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D O3K_13240 colanic acid/biofilm transcriptional regulator K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator
D O3K_06230 DNA-binding transcriptional regulator CsiR K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D O3K_12740 hypothetical protein K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D O3K_21755 GntR family transcriptional regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D O3K_00385 tetracycline repressor protein K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D O3K_19935 transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D O3K_19175 DNA-binding transcriptional repressor AcrR K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D O3K_00635 slmA; division inhibitor protein K05501 slmA; TetR/AcrR family transcriptional regulator
D O3K_15920 HTH-type transcriptional regulator RutR K09017 rutR; TetR/AcrR family transcriptional regulator
D O3K_11985 putative DNA-binding transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D O3K_22105 HTH regulator, TetR family protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D O3K_12145 DNA-binding transcriptional repressor UidR K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D O3K_02645 DNA-binding transcriptional regulator EnvR K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D O3K_22390 putative transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA
D O3K_15005 hypothetical protein K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D O3K_24005 DNA-binding transcriptional repressor FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D O3K_17370 putative DNA-binding transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D O3K_17115 DNA-binding transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D O3K_25105 DNA-binding transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D O3K_16905 leucine-responsive transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D O3K_19255 putative LRP-like transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D O3K_10050 DNA-binding transcriptional activator SdiA K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D O3K_20020 transcriptional regulator K21963 ecpR; LuxR family transcriptional regulator, Mat/Ecp fimbriae transcriptional regulator
D O3K_09880 rcsA; colanic acid capsular biosynthesis activation protein A K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D O3K_15355 DNA-binding transcriptional regulator CsgD K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D O3K_01375 DNA-binding transcriptional regulator K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator
D O3K_21710 DNA-binding transcriptional activator BglJ K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D O3K_01970 transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D O3K_01350 DNA-binding transcriptional activator K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator
C MarR family
D O3K_12825 DNA-binding transcriptional repressor MarR K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D O3K_12020 transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D O3K_06135 transcriptional repressor MprA K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D O3K_05830 transcriptional regulator hosA K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
C MerR family
D O3K_00410 putative transcriptional regulator MerR K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D O3K_00435 transcriptional regulator MerD K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D O3K_19055 DNA-binding transcriptional regulator CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D O3K_02540 zntR; zinc-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D O3K_23535 redox-sensitivie transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D O3K_08815 transcriptional regulator MirA K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D O3K_14865 putative DNA-binding transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D O3K_18225 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D O3K_23625 zinc uptake transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D O3K_23790 transcriptional repressor IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D O3K_19745 DNA-binding transcriptional activator MhpR K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D O3K_18965 DNA-binding transcriptional repressor AllR K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons
D O3K_10810 DNA-binding transcriptional regulator KdgR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D O3K_00980 putative DNA-binding transcriptional repressor K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D O3K_02280 DNA-binding transcriptional dual regulator Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D O3K_13655 fumarate/nitrate reduction transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D O3K_08630 DNA-binding transcriptional activator YeiL K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D O3K_06760 DNA-binding transcriptional regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D O3K_22755 transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D O3K_01410 DNA-binding transcriptional repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D O3K_13320 putative DNA-binding transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D O3K_17265 manganese transport regulator MntR K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D O3K_07270 transcriptional regulator MurR K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D O3K_10665 DNA-binding transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D O3K_23975 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D O3K_02660 fis; global DNA-binding transcriptional dual regulator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D O3K_21580 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D O3K_19820 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D O3K_03000 DNA-binding transcriptional regulator Nlp K07724 ner; Ner family transcriptional regulator
D O3K_21210 transcriptional regulator SgrR K11925 sgrR; SgrR family transcriptional regulator
D O3K_21595 bifunctional DNA-binding transcriptional repressor/NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D O3K_13835 DNA-binding transcriptional repressor PuuR K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D O3K_01490 putative transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D O3K_22250 transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D O3K_12940 antitoxin HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D O3K_14320 phage repressor protein CI K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D O3K_03545 putative DNA-binding transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D O3K_05985 HTH-type transcriptional regulator ygjM K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D O3K_06965 DNA-binding transcriptional activator, formate sensing K12146 hyfR; hydrogenase-4 transcriptional activator
D O3K_06030 anaerobic nitric oxide reductase transcription regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D O3K_05900 formate hydrogenlyase transcriptional activator FhlA K15836 fhlA; formate hydrogenlyase transcriptional activator
D O3K_20750 carbohydrate diacid transcriptional activator CdaR K02647 cdaR; carbohydrate diacid regulator
D O3K_17865 DNA-binding transcriptional regulator ModE K02019 modE; molybdate transport system regulatory protein
D O3K_02045 HTH-type transcriptional regulator yiaG K07726 K07726; putative transcriptional regulator
D O3K_01085 putative transcriptional regulator K07726 K07726; putative transcriptional regulator
D O3K_12440 DNA-binding protein K07726 K07726; putative transcriptional regulator
D O3K_24435 hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D O3K_01650 nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D O3K_24145 transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D O3K_15915 putA; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
D O3K_24380 putative frv operon regulatory protein K18531 frvR; putative frv operon regulatory protein
C Others
D O3K_19690 regulator protein FrmR K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D O3K_08920 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D O3K_19315 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D O3K_25892 Type II plasmid partioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D O3K_24655 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D O3K_02780 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D O3K_18260 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D O3K_12270 NAGC-like transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D O3K_00835 mtlR; mannitol repressor protein K02562 mtlR; mannitol operon repressor
D O3K_13715 DNA-binding transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D O3K_23205 DNA-binding transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D O3K_05250 transcriptional regulator K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1
D O3K_07035 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D O3K_13475 DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D O3K_13815 pspF; phage shock protein operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D O3K_13800 DNA-binding transcriptional activator PspC K03973 pspC; phage shock protein C
D O3K_12920 transcriptional regulator LsrR K11531 lsrR; lsr operon transcriptional repressor
D O3K_14655 DNA-binding transcriptional regulator DhaR K05880 dhaR; transcriptional activator for dhaKLM operon
D O3K_18540 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D O3K_06300 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D O3K_20170 Phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D O3K_15825 putative regulatory protein K07733 alpA; prophage regulatory protein
D O3K_00340 putative Prophage CP4-57 regulatory protein K07733 alpA; prophage regulatory protein
D O3K_21950 hypothetical protein K07733 alpA; prophage regulatory protein
D O3K_04240 putative Prophage CP4-57 regulatory protein K07733 alpA; prophage regulatory protein
D O3K_09510 InterPro motifs Prophage CP4-57 regulatory protein (AlpA) K07733 alpA; prophage regulatory protein
D O3K_04710 hypothetical protein K07735 algH; putative transcriptional regulator
D O3K_21375 DNA-binding transcriptional activator CaiF K08277 caiF; transcriptional activator CaiF
D O3K_20840 dksA; RNA polymerase-binding transcription factor K06204 dksA; RNA polymerase-binding transcription factor
D O3K_19440 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D O3K_20265 DNA-binding transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
D O3K_01955 sigma 54-dependent transcriptional regulator of rtcBA expression K14414 rtcR; transcriptional regulatory protein RtcR
D O3K_21150 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
D O3K_03830 putative transcriptional regulator K07471 ygiV; probable transcriptional regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0