+E Messenger RNA Biogenesis KO #

  Messenger RNA Biogenesis - Escherichia coli O17:K52:H18 UMN026 (ExPEC)

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AEukaryotic type B mRNA processing factors C 5' end processing D Capping factors D Cap binding complex C 3' end processing D Pre-mRNA cleavage factor Im (CFIm) D Pre-mRNA cleavage factor IIm (CFIIm) D Cleavage and polyadenylation specificity factor (CPSF) complex D Cleavage stimulation factor (CSTF) complex D U7-dependent histone pre-mRNA processing factors D DRB sensitivity inducing factor (DSIF) complex D N6-methyltransferase complex D Poly(A) addition factors D Negative regulators of mRNA 3' end processing C Other processing factors B mRNA surveillance and transport factors C Transport factors D EJC complex D TREX complex D TREX-2 complex D Nuclear pore complex D Ran-mediated transport factors D eIF4F and regulatory proteins D APOBEC1-ACF complex D Other transport factors C Surveillance factors D Surveillance complex D Protein phosphatase 2A D Other surveillance factors C Factors involved in mRNA localization D Cargo complex D Factors that have mRNA localization signals D Trans-acting binding proteins D Other mRNA localization factors C mRNA cycle factors D Common to processing body (P body) and stress granule D P-body specific factors D Stress granule specific factors B mRNA degradation factors C 5'-3' decay D Decapping complex D Lsm complex D 5' exonucleases D Other 5'-3' decay factors C 3'-5' decay D Core exosome factors D Exosome cofactors D TRAMP complex D Ski complex D Ccr4-NOT complex D Pan complex D Other 3'-5' decay factors C Other degradation factors D RNases # AProkaryotic type B Bacterial mRNA degradation factors C RNA degradosome components D Ribonucreases E ECUMN_1260 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12] E ECUMN_3720 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] E ECUMN_2888 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3] E ECUMN_4712 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1] E ECUMN_4696 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D Helicases E ECUMN_4304 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7] E ECUMN_0941 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] E ECUMN_3644 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] E ECUMN_4348 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Other RNA degradosome components E ECUMN_3110 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] E ECUMN_3646 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] E ECUMN_4307 rho; transcription termination factor K03628 rho; transcription termination factor Rho E ECUMN_4444 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C Other RNA degradation factors D Chaperones E ECUMN_0014 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK E ECUMN_4678 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] E ECUMN_4705 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein D Others E ECUMN_2815 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] E ECUMN_0140 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] E ECUMN_3157 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] E ECUMN_3017 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator E ECUMN_3726 csrD; inner membrane associated factor modulating specific RNAseE dependent RNA degradation pathways K18765 csrD; RNase E specificity factor CsrD E ECUMN_4459 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A E ECUMN_4787 yjgD; conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B E ECUMN_3685 yhbJ; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ E ECUMN_1659 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6] E ECUMN_0145 hrpB; ATP-dependent (RNA) helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] D Bacterial Small RNA Regulators E ECUMN_misc_RNA_33 dsrA; DsrA K18502 dsrA; small regulatory RNA DsrA E ECUMN_misc_RNA_9 sroB; SroB K18503 chiX; small regulatory RNA ChiX E ECUMN_misc_RNA_65 ryhA; RyhA K18504 arcZ; small regulatory RNA ArcZ E ECUMN_misc_RNA_45 tke1; tke1 K15841 glmY; small regulatory RNA GlmY E ECUMN_misc_RNA_71 ryiA; RyiA K18505 glmZ; small regulatory RNA GlmZ E ECUMN_misc_RNA_3 sgrS; SgrS K18506 sgrS; small regulatory RNA SgrS E ECUMN_misc_RNA_67 ryhB; RyhB K18507 ryhB; small regulatory RNA RyhB E ECUMN_misc_RNA_12 rybB; RybB K18508 rybB; small regulatory RNA RybB E ECUMN_misc_RNA_22 rydC; RydC K18509 rydC; small regulatory RNA RydC E ECUMN_misc_RNA_50 micA; MicA K18511 micA; small regulatory RNA MicA E ECUMN_misc_RNA_21 micC; MicC K18512 micC; small regulatory RNA MicC E ECUMN_misc_RNA_40 micF; MicF K18513 micF; small regulatory RNA MicF E ECUMN_misc_RNA_51 csrB; CsrB K18515 csrB; small regulatory RNA CsrB E ECUMN_misc_RNA_73 csrC; CsrC K18516 csrC; small regulatory RNA CsrC E ECUMN_misc_RNA_25 dicF; DicF K18517 dicF; small regulatory RNA DicF E ECUMN_misc_RNA_27 rprA; RprA K18518 rprA; small regulatory RNA RprA E ECUMN_misc_RNA_34 rseX; RseX K18519 rseX; small regulatory RNA RseX E ECUMN_misc_RNA_39 ryeE; RyeE K18520 cyaR; small regulatory RNA CyaR E ECUMN_misc_RNA_52 gcvB; GcvB K18521 gcvB; small regulatory RNA GcvB E ECUMN_misc_RNA_53 omrA; OmrA K18522 omrA; small regulatory RNA OmrA E ECUMN_misc_RNA_54 omrB; OmrB K18523 omrB; small regulatory RNA OmrB E ECUMN_misc_RNA_68 gadY; GadY K18525 gadY; small regulatory RNA GadY E ECUMN_misc_RNA_70 istR; IstR K18526 istR; sRNA antisense regulator of TisB protein E ECUMN_misc_RNA_72 spf; Spot42 K18527 spf; small regulatory RNA Spot 42 E ECUMN_misc_RNA_74 oxyS; OxyS K18528 oxyS; small regulatory RNA OxyS B Archeal mRNA degradation factors C Exosome components D Core exosome D Cofactors D Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024