+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Escherichia coli O17:K52:H18 UMN026 (ExPEC)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
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AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E ECUMN_1260 rne; fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein K08300 rne; ribonuclease E [EC:3.1.26.12]
E ECUMN_3720 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
E ECUMN_2888 rnc; RNase III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E ECUMN_4712 rnr; exoribonuclease R, RNase R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E ECUMN_4696 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
E ECUMN_4304 rhlB; ATP-dependent RNA helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
E ECUMN_0941 rhlE; RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
E ECUMN_3644 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E ECUMN_4348 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E ECUMN_3110 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E ECUMN_3646 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E ECUMN_4307 rho; transcription termination factor K03628 rho; transcription termination factor Rho
E ECUMN_4444 pfkA; 6-phosphofructokinase I K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E ECUMN_0014 dnaK; chaperone Hsp70, co-chaperone with DnaJ K04043 dnaK; molecular chaperone DnaK
E ECUMN_4678 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E ECUMN_4705 hfq; HF-I, host factor for RNA phage Q beta replication K03666 hfq; host factor-I protein
D Others
E ECUMN_2815 ppk; polyphosphate kinase, component of RNA degradosome K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
E ECUMN_0140 pcnB; poly(A) polymerase I K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
E ECUMN_3157 nudH; nucleotide hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
E ECUMN_3017 csrA; pleiotropic regulatory protein for carbon source metabolism K03563 csrA; carbon storage regulator
E ECUMN_3726 csrD; inner membrane associated factor modulating specific RNAseE dependent RNA degradation pathways K18765 csrD; RNase E specificity factor CsrD
E ECUMN_4459 rraA; ribonuclease E (RNase E) inhibitor protein K02553 rraA; regulator of ribonuclease activity A
E ECUMN_4787 yjgD; conserved hypothetical protein K09893 rraB; regulator of ribonuclease activity B
E ECUMN_3685 yhbJ; conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain K06958 rapZ; RNase adapter protein RapZ
E ECUMN_1659 hrpA; ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
E ECUMN_0145 hrpB; ATP-dependent (RNA) helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D Bacterial Small RNA Regulators
E ECUMN_misc_RNA_33 dsrA; DsrA K18502 dsrA; small regulatory RNA DsrA
E ECUMN_misc_RNA_9 sroB; SroB K18503 chiX; small regulatory RNA ChiX
E ECUMN_misc_RNA_65 ryhA; RyhA K18504 arcZ; small regulatory RNA ArcZ
E ECUMN_misc_RNA_45 tke1; tke1 K15841 glmY; small regulatory RNA GlmY
E ECUMN_misc_RNA_71 ryiA; RyiA K18505 glmZ; small regulatory RNA GlmZ
E ECUMN_misc_RNA_3 sgrS; SgrS K18506 sgrS; small regulatory RNA SgrS
E ECUMN_misc_RNA_67 ryhB; RyhB K18507 ryhB; small regulatory RNA RyhB
E ECUMN_misc_RNA_12 rybB; RybB K18508 rybB; small regulatory RNA RybB
E ECUMN_misc_RNA_22 rydC; RydC K18509 rydC; small regulatory RNA RydC
E ECUMN_misc_RNA_50 micA; MicA K18511 micA; small regulatory RNA MicA
E ECUMN_misc_RNA_21 micC; MicC K18512 micC; small regulatory RNA MicC
E ECUMN_misc_RNA_40 micF; MicF K18513 micF; small regulatory RNA MicF
E ECUMN_misc_RNA_51 csrB; CsrB K18515 csrB; small regulatory RNA CsrB
E ECUMN_misc_RNA_73 csrC; CsrC K18516 csrC; small regulatory RNA CsrC
E ECUMN_misc_RNA_25 dicF; DicF K18517 dicF; small regulatory RNA DicF
E ECUMN_misc_RNA_27 rprA; RprA K18518 rprA; small regulatory RNA RprA
E ECUMN_misc_RNA_34 rseX; RseX K18519 rseX; small regulatory RNA RseX
E ECUMN_misc_RNA_39 ryeE; RyeE K18520 cyaR; small regulatory RNA CyaR
E ECUMN_misc_RNA_52 gcvB; GcvB K18521 gcvB; small regulatory RNA GcvB
E ECUMN_misc_RNA_53 omrA; OmrA K18522 omrA; small regulatory RNA OmrA
E ECUMN_misc_RNA_54 omrB; OmrB K18523 omrB; small regulatory RNA OmrB
E ECUMN_misc_RNA_68 gadY; GadY K18525 gadY; small regulatory RNA GadY
E ECUMN_misc_RNA_70 istR; IstR K18526 istR; sRNA antisense regulator of TisB protein
E ECUMN_misc_RNA_72 spf; Spot42 K18527 spf; small regulatory RNA Spot 42
E ECUMN_misc_RNA_74 oxyS; OxyS K18528 oxyS; small regulatory RNA OxyS
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024