+F Repair protein KO #

  DNA Repair and Recombination Proteins - Gluconobacter oxydans H24

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D B932_1061 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B932_1185 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E B932_1043 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E B932_0850 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D B932_3399 nuclease S1 K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D B932_0277 acetyltransferase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B932_3367 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B932_2538 Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D B932_1061 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D B932_1607 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D B932_1185 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D B932_2260 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D B932_0147 alkylated DNA repair protein AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E B932_0267 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E B932_1400 DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E B932_2384 DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E B932_0478 bacteriophage-type DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E B932_1204 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E B932_1043 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E B932_2084 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E B932_2536 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E B932_0850 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E B932_0165 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E B932_2730 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E B932_0523 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E B932_2315 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E B932_0200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E B932_1274 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E B932_0135 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E B932_2728 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E B932_3634 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B932_2582 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B932_0200 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E B932_2315 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F B932_1994 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F B932_1995 DNA-directed RNA polymerase subunit beta prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F B932_2027 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F B932_0265 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F B932_2470 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E B932_0116 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E B932_1799 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E B932_0878 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E B932_0195 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E B932_1586 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E B932_2144 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E B932_2446 DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E B932_2531 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E B932_2095 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E B932_1971 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E B932_2512 DNA polymerase III subunit delta' DnaC K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E B932_0019 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E B932_3125 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E B932_0644 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E B932_2315 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E B932_3634 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B932_2582 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E B932_1275 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E B932_3629 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E B932_3343 exodeoxyribonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E B932_0514 RecA K03553 recA; recombination protein RecA E B932_0352 RuvA K03550 ruvA; holliday junction DNA helicase RuvA E B932_0351 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E B932_0353 holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E B932_1457 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E B932_2802 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E B932_2801 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E B932_0514 RecA K03553 recA; recombination protein RecA E B932_1227 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E B932_2530 recombination protein F K03629 recF; DNA replication and repair protein RecF E B932_2469 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E B932_0523 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E B932_2449 putative DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E B932_0642 recombination protein RecR K06187 recR; recombination protein RecR E B932_2316 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E B932_0352 RuvA K03550 ruvA; holliday junction DNA helicase RuvA E B932_0351 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E B932_0353 holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E B932_0719 ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E B932_0720 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E B932_0096 CRISPR-associated Cas1 family protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E B932_2802 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E B932_2801 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F B932_1279 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F B932_2529 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F B932_0861 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F B932_1546 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F B932_2438 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F B932_3328 DNA-binding protein HU-1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F B932_0523 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F B932_2449 putative DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F B932_0642 recombination protein RecR K06187 recR; recombination protein RecR F B932_2315 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F B932_2407 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F B932_2387 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F B932_2558 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F B932_1274 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F B932_0135 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D B932_1336 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D B932_0514 RecA K03553 recA; recombination protein RecA D B932_2725 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D B932_2316 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D B932_0530 hypothetical protein K14160 imuA; protein ImuA D B932_3603 hypothetical protein K14160 imuA; protein ImuA D B932_2602 hypothetical protein K14160 imuA; protein ImuA D B932_0529 putative DNA polymerase protein K14161 imuB; protein ImuB D B932_3602 Protein imuB K14161 imuB; protein ImuB D B932_2601 putative DNA polymerase protein K14161 imuB; protein ImuB D B932_0528 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D B932_3600 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D B932_2600 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D B932_1275 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D B932_3629 single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D B932_0892 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D B932_0076 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D B932_0277 acetyltransferase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B932_3367 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D B932_2538 Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D B932_3532 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D B932_1002 vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D B932_3530 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024