+F Repair protein KO #

  DNA Repair and Recombination Proteins - Listeria monocytogenes L99 (serotype 4a)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D lmo4a_1012 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D lmo4a_0603 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E lmo4a_1207 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E lmo4a_0403 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E lmo4a_0943 3-methyladenine DNA glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E lmo4a_1746 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E lmo4a_1951 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E lmo4a_0177 DNA repair helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D lmo4a_1681 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_1301 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_2371 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_1726 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_1748 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D lmo4a_1012 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D lmo4a_0061 ada; Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D lmo4a_2304 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D lmo4a_2303 ogt-2; methylated-DNA--protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D lmo4a_0603 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E lmo4a_1207 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E lmo4a_0403 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E lmo4a_0943 3-methyladenine DNA glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E lmo4a_1746 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E lmo4a_1699 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E lmo4a_1620 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E lmo4a_1951 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E lmo4a_1837 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E lmo4a_1506 nfo; apurinic endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E lmo4a_1581 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E lmo4a_1621 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E lmo4a_2490 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A E lmo4a_2491 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B E lmo4a_1214 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E lmo4a_1814 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E lmo4a_1621 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F lmo4a_0282 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F lmo4a_0283 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F lmo4a_2670 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F lmo4a_2561 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F lmo4a_1883 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F lmo4a_0230 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E lmo4a_1460 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E lmo4a_1212 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E lmo4a_1461 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E lmo4a_1418 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E lmo4a_1419 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E lmo4a_1630 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E lmo4a_1376 polC; DNA polymerase III, alpha chain, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E lmo4a_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E lmo4a_1537 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E lmo4a_0182 holB; DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E lmo4a_2767 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E lmo4a_1814 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E lmo4a_0038 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E lmo4a_2632 ssb-3; single-stranded DNA-binding protein 3 K03111 ssb; single-strand DNA-binding protein E lmo4a_2525 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E lmo4a_1565 recD; exodeoxyribonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E lmo4a_1455 recA; recombination protein K03553 recA; recombination protein RecA E lmo4a_1589 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E lmo4a_1588 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E lmo4a_1881 priA; primosomal protein N` (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E lmo4a_1705 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E lmo4a_1706 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E lmo4a_1455 recA; recombination protein K03553 recA; recombination protein RecA E lmo4a_0249 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E lmo4a_0005 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E lmo4a_1868 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E lmo4a_1581 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E lmo4a_1516 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) E lmo4a_2765 recR; recombination protein K06187 recR; recombination protein RecR E lmo4a_1425 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E lmo4a_1948 recU; recombination protein U K03700 recU; recombination protein U E lmo4a_1589 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E lmo4a_1588 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E lmo4a_2327 addA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E lmo4a_2328 addB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E lmo4a_1705 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50 E lmo4a_1706 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F lmo4a_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F lmo4a_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F lmo4a_1329 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F lmo4a_1991 hup; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F lmo4a_2645 bacteriophage recombinase, putative K07455 recT; recombination protein RecT F lmo4a_1581 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F lmo4a_1516 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O) F lmo4a_2765 recR; recombination protein K06187 recR; recombination protein RecR F lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F lmo4a_1999 ATP-dependent DNA helicase, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F lmo4a_2823 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F lmo4a_2490 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A F lmo4a_2491 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D lmo4a_2026 dinP; DNA-damage-inducible DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D lmo4a_2738 DNA polymerase IV 2, putative K03502 umuC; DNA polymerase V C Other SOS response factors D lmo4a_1455 recA; recombination protein K03553 recA; recombination protein RecA D lmo4a_1358 lexA; SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D lmo4a_1425 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D lmo4a_0038 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D lmo4a_2632 ssb-3; single-stranded DNA-binding protein 3 K03111 ssb; single-strand DNA-binding protein D lmo4a_2525 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D lmo4a_1750 recX; regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D lmo4a_1211 DNA polymerase X family protein K02347 polX; DNA polymerase (family X) C DNA helicases D lmo4a_1956 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D lmo4a_1681 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_1301 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_2371 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_1726 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D lmo4a_1748 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D lmo4a_2216 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D lmo4a_2215 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D lmo4a_1631 RecJ-like phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024