+F Repair protein KO
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DNA Repair and Recombination Proteins - Listeria monocytogenes L99 (serotype 4a)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D lmo4a_1012 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D lmo4a_0603 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E lmo4a_1207 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E lmo4a_0403 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E lmo4a_0943 3-methyladenine DNA glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E lmo4a_1746 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E lmo4a_1951 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E lmo4a_0177 DNA repair helicase family protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D lmo4a_1681 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_1301 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_2371 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_1726 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_1748 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D lmo4a_1012 ogt-1; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D lmo4a_0061 ada; Ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D lmo4a_2304 adaA; methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D lmo4a_2303 ogt-2; methylated-DNA--protein-cysteine S-methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D lmo4a_0603 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E lmo4a_1207 ung-2; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E lmo4a_0403 ung-1; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E lmo4a_0943 3-methyladenine DNA glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E lmo4a_1746 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E lmo4a_1699 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E lmo4a_1620 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E lmo4a_1951 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E lmo4a_1837 exoA; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E lmo4a_1506 nfo; apurinic endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E lmo4a_1581 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E lmo4a_1621 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E lmo4a_2490 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
E lmo4a_2491 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
E lmo4a_1214 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
E lmo4a_1814 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E lmo4a_1621 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F lmo4a_0282 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F lmo4a_0283 rpoC; DNA-directed RNA polymerase, beta subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F lmo4a_2670 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F lmo4a_2561 rpoE; DNA-directed RNA polymerase, delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta
F lmo4a_1883 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F lmo4a_0230 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E lmo4a_1460 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E lmo4a_1212 DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E lmo4a_1461 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E lmo4a_1418 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E lmo4a_1419 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E lmo4a_1630 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E lmo4a_1376 polC; DNA polymerase III, alpha chain, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E lmo4a_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E lmo4a_1537 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E lmo4a_0182 holB; DNA polymerase III, delta subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E lmo4a_2767 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E lmo4a_1814 pcrA; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E lmo4a_0038 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E lmo4a_2632 ssb-3; single-stranded DNA-binding protein 3 K03111 ssb; single-strand DNA-binding protein
E lmo4a_2525 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E lmo4a_1565 recD; exodeoxyribonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E lmo4a_1455 recA; recombination protein K03553 recA; recombination protein RecA
E lmo4a_1589 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E lmo4a_1588 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E lmo4a_1881 priA; primosomal protein N` (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E lmo4a_1705 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50
E lmo4a_1706 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E lmo4a_1455 recA; recombination protein K03553 recA; recombination protein RecA
E lmo4a_0249 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E lmo4a_0005 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
E lmo4a_1868 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E lmo4a_1581 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E lmo4a_1516 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O)
E lmo4a_2765 recR; recombination protein K06187 recR; recombination protein RecR
E lmo4a_1425 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E lmo4a_1948 recU; recombination protein U K03700 recU; recombination protein U
E lmo4a_1589 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E lmo4a_1588 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E lmo4a_2327 addA; ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E lmo4a_2328 addB; ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E lmo4a_1705 sbcC; exonuclease, SbcC family K03546 sbcC; DNA repair protein SbcC/Rad50
E lmo4a_1706 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F lmo4a_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F lmo4a_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F lmo4a_1329 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F lmo4a_1991 hup; DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F lmo4a_2645 bacteriophage recombinase, putative K07455 recT; recombination protein RecT
F lmo4a_1581 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F lmo4a_1516 recO; DNA repair protein O K03584 recO; DNA repair protein RecO (recombination protein O)
F lmo4a_2765 recR; recombination protein K06187 recR; recombination protein RecR
F lmo4a_1813 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F lmo4a_1999 ATP-dependent DNA helicase, putative K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F lmo4a_2823 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F lmo4a_2490 uvrA; excinuclease ABC, subunit A K03701 uvrA; excinuclease ABC subunit A
F lmo4a_2491 uvrB; excinuclease ABC, subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D lmo4a_2026 dinP; DNA-damage-inducible DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D lmo4a_2738 DNA polymerase IV 2, putative K03502 umuC; DNA polymerase V
C Other SOS response factors
D lmo4a_1455 recA; recombination protein K03553 recA; recombination protein RecA
D lmo4a_1358 lexA; SOS-response transcriptional repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D lmo4a_1425 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D lmo4a_0038 ssb-1; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D lmo4a_2632 ssb-3; single-stranded DNA-binding protein 3 K03111 ssb; single-strand DNA-binding protein
D lmo4a_2525 ssb-2; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D lmo4a_1750 recX; regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D lmo4a_1211 DNA polymerase X family protein K02347 polX; DNA polymerase (family X)
C DNA helicases
D lmo4a_1956 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D lmo4a_1681 MutT/NUDIX family hydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_1301 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_2371 MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_1726 MutT/nudix hydrolase family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D lmo4a_1748 dut; deoxyuridine 5`-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D lmo4a_2216 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D lmo4a_2215 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D lmo4a_1631 RecJ-like phosphoesterase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024