+F Repair protein KO
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DNA Repair and Recombination Proteins - Pantoea vagans FDAARGOS_160
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AL522_10160 glycosyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AL522_09990 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AL522_18670 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AL522_20010 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AL522_13420 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D AL522_07620 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AL522_04115 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AL522_10160 glycosyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D AL522_09990 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D AL522_17390 DNA oxidative demethylase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E AL522_18670 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AL522_20490 G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E AL522_00055 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E AL522_10155 DNA-3-methyladenine glycosylase 2 family protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AL522_20010 adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AL522_04575 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AL522_04090 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AL522_10030 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E AL522_13420 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AL522_14945 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E AL522_17105 deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E AL522_05505 deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E AL522_19740 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E AL522_04190 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E AL522_18065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E AL522_04285 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AL522_03270 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
E AL522_05770 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
E AL522_10300 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E AL522_11350 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C
E AL522_12855 excinuclease Cho K05984 cho; excinuclease Cho [EC:3.1.25.-]
E AL522_05175 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AL522_04285 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AL522_04190 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E AL522_18065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F AL522_05460 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F AL522_05465 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F AL522_21480 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F AL522_04200 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F AL522_11915 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AL522_19290 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E AL522_21140 DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E AL522_19680 DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E AL522_16580 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E AL522_18390 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E AL522_09140 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E AL522_15385 exodeoxyribonuclease X K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E AL522_08035 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E AL522_04690 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E AL522_06725 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E AL522_09800 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E AL522_11845 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E AL522_08170 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E AL522_09385 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E AL522_07160 DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
E AL522_08720 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
E AL522_00435 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
E AL522_15380 DNA polymerase III subunit theta K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D DNA ligase
E AL522_04190 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E AL522_18065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E AL522_05175 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E AL522_08750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E AL522_05775 single-stranded DNA-binding protein SSB1 K03111 ssb; single-strand DNA-binding protein
E AL522_20675 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E AL522_21825 adenine-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E AL522_15945 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AL522_19625 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E AL522_19635 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E AL522_19620 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E AL522_19230 recA; recombinase RecA K03553 recA; recombination protein RecA
E AL522_15460 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AL522_15455 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AL522_15465 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E AL522_03860 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E AL522_21055 primosomal replication protein N K02686 priB; primosomal replication protein N
E AL522_09370 PriC K04067 priC; primosomal replication protein N''
E AL522_04560 primosomal protein DnaT K02317 dnaT; DNA replication protein DnaT
E AL522_16580 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E AL522_08635 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AL522_08640 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E AL522_19230 recA; recombinase RecA K03553 recA; recombination protein RecA
E AL522_07185 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E AL522_04685 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E AL522_04215 DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E AL522_19740 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E AL522_18600 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E AL522_09395 recombination protein RecR K06187 recR; recombination protein RecR
E AL522_18685 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E AL522_08590 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
E AL522_15460 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E AL522_15455 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E AL522_15465 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E AL522_17195 ATP-dependent helicase K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E AL522_08635 exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E AL522_08640 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E AL522_06805 DUF853 domain-containing protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AL522_17455 DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AL522_04680 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AL522_14700 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F AL522_05515 DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
F AL522_09230 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F AL522_19740 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F AL522_18600 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F AL522_09395 recombination protein RecR K06187 recR; recombination protein RecR
F AL522_04190 NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F AL522_18065 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F AL522_21340 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F AL522_12965 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F AL522_10975 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F AL522_16580 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F AL522_05205 DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F AL522_03270 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
F AL522_05770 excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A
F AL522_10300 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F AL522_02685 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F AL522_02700 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F AL522_10650 DNA-binding protein K03746 hns; DNA-binding protein H-NS
F AL522_14885 DNA-binding transcriptional regulator H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AL522_08320 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D AL522_13325 translesion error-prone DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D AL522_00040 translesion error-prone DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D AL522_00120 translesion error-prone DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D AL522_09060 phage repressor protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AL522_13320 translesion error-prone DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AL522_00105 SamA K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D AL522_00115 peptidase K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D AL522_19230 recA; recombinase RecA K03553 recA; recombination protein RecA
D AL522_05695 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D AL522_18685 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D AL522_07460 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D AL522_08750 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D AL522_05775 single-stranded DNA-binding protein SSB1 K03111 ssb; single-strand DNA-binding protein
D AL522_11665 DNA damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D AL522_20660 DNA-damage-inducible protein DinI K12149 dinI; DNA-damage-inducible protein I
D AL522_19225 regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D AL522_05020 DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D AL522_11195 DNA helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D AL522_10510 ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D AL522_15115 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D AL522_01050 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D AL522_07620 8-oxo-dGTP diphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AL522_04115 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AL522_18995 class 1b ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AL522_17465 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D AL522_19000 nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D AL522_17470 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024