+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhizobium sp. N1341

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AMJ98_CH00298 methylated-DNA--protein-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E AMJ98_CH03444 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMJ98_CH03549 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AMJ98_CH01013 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMJ98_CH03908 endonuclease III family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AMJ98_PE00029 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH02690 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH03988 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH02320 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH00344 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AMJ98_CH00298 methylated-DNA--protein-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D AMJ98_CH03906 methylated-DNA--protein-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AMJ98_CH00441 methylated-DNA--protein-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AMJ98_CH00039 alkB; DNA oxidative demethylase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E AMJ98_CH03444 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AMJ98_CH03128 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AMJ98_CH01340 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AMJ98_PD00237 uracil-DNA glycosylase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AMJ98_CH04007 HhH-GPD domain-containing protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E AMJ98_CH03549 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E AMJ98_CH01013 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AMJ98_CH00834 tag; DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AMJ98_CH00368 mutM; bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AMJ98_CH03908 endonuclease III family protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AMJ98_CH01860 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AMJ98_CH04196 exodeoxyribonuclease III xth protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AMJ98_CH01771 exodeoxyribonuclease III xth protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AMJ98_CH01936 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AMJ98_CH03000 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AMJ98_CH00157 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AMJ98_CH02158 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E AMJ98_CH02715 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AMJ98_CH01521 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AMJ98_CH00587 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMJ98_PC00022 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMJ98_CH02984 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMJ98_CH00157 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AMJ98_CH03000 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AMJ98_CH01702 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AMJ98_CH01703 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AMJ98_CH01738 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AMJ98_CH01425 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AMJ98_CH02147 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AMJ98_CH00406 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E AMJ98_CH00867 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AMJ98_CH00288 xseA; exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AMJ98_CH00935 xseB; exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AMJ98_CH01655 dnaE1; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AMJ98_CH00332 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AMJ98_CH01505 DNA polymerase III chi subunit HolC protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E AMJ98_CH04353 DNA polymerase III delta subunit protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AMJ98_CH02209 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AMJ98_CH02998 exonuclease RNase T/DNA polymerase III protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMJ98_CH00005 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMJ98_PD00418 DNA polymerase III subunit epsilon protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AMJ98_CH00129 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AMJ98_CH03000 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AMJ98_CH00587 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMJ98_PC00022 DNA helicase UvrD-like protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMJ98_CH02984 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AMJ98_CH02159 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AMJ98_CH02380 recA; recombinase A K03553 recA; recombination protein RecA E AMJ98_CH03698 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMJ98_CH03699 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMJ98_CH03695 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AMJ98_CH04103 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E AMJ98_CH02380 recA; recombinase A K03553 recA; recombination protein RecA E AMJ98_CH01478 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AMJ98_CH00145 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E AMJ98_CH02145 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AMJ98_CH01936 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AMJ98_CH01435 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AMJ98_CH00126 recR; recombination protein RecR K06187 recR; recombination protein RecR E AMJ98_CH03002 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AMJ98_CH03698 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AMJ98_CH03699 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AMJ98_CH03695 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E AMJ98_CH00026 double-strand break repair helicase AddA type protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E AMJ98_CH00027 double-strand break repair helicase AddB type protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E AMJ98_CH01220 nucleotide triphosphate hydrolase protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E AMJ98_CH00650 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMJ98_CH00652 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMJ98_PD00259 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMJ98_PD00260 ATP-dependent DNA helicase Ku-type protein K10979 ku; DNA end-binding protein Ku E AMJ98_CH02611 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMJ98_CH00651 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMJ98_PD00261 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMJ98_PD00262 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E AMJ98_PA00076 ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AMJ98_CH02162 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AMJ98_CH00012 gyrB-1; DNA gyrase subunit B 1 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AMJ98_PD00216 DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AMJ98_CH01668 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AMJ98_CH01620 DNA-binding HU-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AMJ98_CH01936 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AMJ98_CH01435 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AMJ98_CH00126 recR; recombination protein RecR K06187 recR; recombination protein RecR F AMJ98_CH03000 ligA; DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F AMJ98_CH01565 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F AMJ98_CH00417 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F AMJ98_CH03115 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AMJ98_CH02158 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F AMJ98_CH02715 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AMJ98_CH01657 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D AMJ98_PA00058 umuC; DNA-repair protein UmuC K03502 umuC; DNA polymerase V D AMJ98_PA00057 impA; DNA-repair protein ImpA K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D AMJ98_CH02380 recA; recombinase A K03553 recA; recombination protein RecA D AMJ98_CH01990 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D AMJ98_CH03002 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AMJ98_CH02652 imuA; inducible mutagenesis protein ImuA K14160 imuA; protein ImuA D AMJ98_CH04318 inducible mutagenesis ImuA-like protein K14160 imuA; protein ImuA D AMJ98_CH02653 imuB-1; DNA-repair protein ImuB 1 K14161 imuB; protein ImuB D AMJ98_CH04317 imuB-2; DNA-repair protein ImuB 2 K14161 imuB; protein ImuB D AMJ98_CH02654 dnaE2-1; error-prone DNA polymerase 1 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AMJ98_CH04316 dnaE2-2; error-prone DNA polymerase 2 K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AMJ98_CH02159 ssb; single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D AMJ98_CH00263 recX; DNA repair regulator protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AMJ98_CH00561 DEAD/DEAH box type DNA/RNA helicase protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AMJ98_PE00029 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH02690 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH03988 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH02320 NUDIX hydrolase domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AMJ98_CH00344 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AMJ98_CH03952 nrdE; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMJ98_CH01800 nrdJ; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AMJ98_CH03951 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024