+F	Chromosome and associated proteins	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Chromosome and Associated Proteins - Pseudorhizobium banfieldiae</h2>
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A<b>Eukaryotic type</b>
B  Sister chromatid cohesion proteins
C    Cohesin complex
C    Adherin complex
C    CTF18-RFC complex
C    Fork protection complex
C    Other sister chromatid cohesion factors
B  Meiosis-specific proteins
C    Cohesin complex and associated proteins
C    Synaptonemal complex
C    DSB formation-related proteins
C    Others
B  Nucleosome assembly factors
C    Histones
C    Histone chaperones
D      Nucleoplasmins
D      NAPs (Nucleosome assembly proteins)
D      CAF-1
D      FACT complex
D      Other Histone chaperones and regulators
C    HMG (high mobility group) proteins
B  Histone modification proteins
C    HATs (histone acetyltransferases)
C    HAT complexes
D      PCAF complex
D      STAGA complex
D      TFTC complex
D      TIP60 complex
D      HBO1 complex
D      MOZ/MORF complex
D      SAGA complex
D      SLIK complex
D      ADA-HAT complex
D      HAT-A2 complex
D      ATAC complex
D      HATB complex
D      NSL complex
D      MSL complex
D      NuA3 complex
D      NuA4 complex
D      SAS complex
C    HDACs (histone deacetylases)
D      Class I HDACs
D      Class II HDACs
D      SIRTs (sirtuins, class III HDACs)
D      Class IV HDACs
C    HDAC complexes
D      Sin3A-HDAC complex
D      BRAF-HDAC complex
D      REST complex
D      SHIP complex
D      MiDAC complex
D      SMART complex
D      Other HDAC associated proteins
C    HMTs (histone methyltransferases)
D      HKMTs (histone lysine methyltransferases)
D      PRMTs (protein arginine metyltransferases)
C    HMT complexes
D      COMPASS/SET1 complex
D      COMPASS/SET1 complex (yeast)
D      MLL-HCF complex
D      MLL3/MLL4 complex
D      Dot1-containing complex
C    Histone demethylases
C    Polycomb repressive complex (PRC) and associated proteins
D      Canonical PRC1 (PRC1.2/1.4)
E        PRC1.4 specific proteins
D      Noncanonical PRC1 (PRC1.1)
D      Noncanonical PRC1 (PRC1.3/1.5)
D      Noncanonical PRC1 (PRC1.6)
D      PRC2.1
D      PRC2.2
D      PR-DUB complex
D      Other PRC associated proteins
C    Sir proteins
C    Other histone modification proteins
B  Chromosome condensation proteins
C    Condensin I
C    Condensin II
C    Other regulators of chromosome condensation
B  Centromeric chromatin formation proteins
C    Kinetochore proteins
D      Centromere proteins
D      CPC (chromosomal passenger complex)
D      KMN network proteins
E        MIS12 complex
E        NDC80 complex
D      Mis6 complex
D      COMA complex
D      NMS complex
E        NDC80 complex
E        MIND kinetochore complex
D      MIS16-MIS18 complex
D      DASH complex
D      CBF3 complex
D      Others
C    SAC (spindle assembly checkpoint) factors
D      Core SAC proteins
D      Motor proteins
E        RZZ complex
E        Dynein complex
D      Protein kinases
D      Others
C    Other centromeric chromatin formation proteins
D      Shugoshin
D      PP2A (protein phosphatase 2A)
B  Heterochromatin formation proteins
C    HP1 (heterochromatin protein 1)
C    MBPs (metylated DNA binding proteins)
C    Other heterochromatin formation proteins
D      NT26_1358 C-5 cytosine-specific DNA methylase	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
B  Gene silencing
C    RISC (RNA-induced silencing complex)
C    piRNA pathway
C    RNA interference (RNAi) pathway
D      RITS (RNA-induced transcriptional silencing) complex
D      RDRC (RNA-directed RNA polymerase complex)
D      Other RNAi proteins
C    microRNA pathway
D      Microprocessor complex
E        NT26_1070 rnc; Ribonuclease 3	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
D      RISC loading complex
D      Other miRNA pathway proteins
C    Transposable elements
B  Centrosome formation proteins
C    Centriole proteins
C    Pericentriolar materials (PCM)
D      Centriolar satellite
D      Other PCM proteins
C    Cyclins
C    Kinases and associated factors
D      Kinase anchoring protein
C    Microtubules and associated factors
D      gamma-tubulin ring complex
D      Other tubulins
D      Dynactin complex
D      BRISC complex
D      Microtubule-associated proteins
C    Augmin complex
C    Centrosome duplication proteins
D      Centriole replication proteins
D      Regulators of centriole replication
D      Other centrosome duplication proteins
C    Nde1-Su48 complex
C    LINC complex
C    3M complex
C    Other centriole associated proteins
D      NT26_2688 Putative fructose-bisphosphate aldolase class 1, Fda	K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] 
C    Spindle formation proteins
B  Sister chromatid separation proteins
C    Securin and associated proteins
C    Separase
C    APC/C complex
C    Aurora kinases
D      Regulators of Aurora kinases
C    TACC proteins
C    Polo kinases
C    Early mitotic inhibitors
B  Chromatin remodeling factors
C    BAF complex
C    PBAF complex
C    GBAF(ncBAF) complex
C    CHRAC complex
C    RSF complex
C    WICH complex
C    B-WICH complex
C    NORC complex
C    BRF complex
C    NuRD complex
C    NuRF complex
C    NuRF complex (fruit fly)
C    CERF complex
C    SRCAP complex
C    INO80 complex
C    INO80 complex (yeast)
C    RSC complex
C    SWI/SNF complex
C    SWR1 complex
C    ASTRA complex
C    Other chromatin remodeling factors
D      NT26_p10222 Putative methylase/helicase; SBNO-like DNA-binding domain, ATP-hydrolysing	K26273 SBNO; protein strawberry notch 
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A<b>Prokaryotic type</b>
B  Nucleoid associated proteins
C    HNS (histone-like nucleoid structuring protein)
D      NT26_p10200 spb; Histone-like nucleoid-structuring (H-NS) protein Spb-like; DNA-binding regulatory protein	K03746 hns; DNA-binding protein H-NS 
D      NT26_p10228 Histone-like nucleoid-structuring protein H-NS; DNA-binding regulatory protein	K03746 hns; DNA-binding protein H-NS 
C    HU (heat unstable protein)
D      NT26_1257 DNA-binding protein HRL18	K03530 hupB; DNA-binding protein HU-beta 
C    IHF (integration host factor)
D      NT26_1212 ihfA; Integration host factor subunit alpha	K04764 ihfA; integration host factor subunit alpha 
D      NT26_0109 ihfB; Integration host factor beta-subunit (IHF-beta)	K05788 ihfB; integration host factor subunit beta 
C    Other nucleoid associated proteins
D      NT26_0001 dnaA; Chromosomal replication initiator protein dnaA	K02313 dnaA; chromosomal replication initiator protein 
D      NT26_1810 conserved hypothetical protein	K11940 hspQ; heat shock protein HspQ 
D      NT26_1637 hfq; Protein hfq (Nif-regulating factor)	K03666 hfq; host factor-I protein 
D      NT26_3638 putR; Proline dehydrogenase transcriptional activator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      NT26_1545 bkdR; Bkd operon transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      NT26_3912 Uncharacterized HTH-type transcriptional regulator y4tD	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
D      NT26_0951 putative AsnC family transcriptional regulator	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
B  Chromosome partitioning proteins
C    MukBEF complex
C    Condensin-like complex
D      NT26_0546 putative chromosome segregation SMC protein	K03529 smc; chromosome segregation protein 
D      NT26_1573 conserved hypothetical protein	K05896 scpA; segregation and condensation protein A 
D      NT26_1574 Transcriptional regulator protein	K06024 scpB; segregation and condensation protein B 
C    Divisome proteins
D      NT26_2142 ftsA; Cell division protein ftsA	K03590 ftsA; cell division protein FtsA 
D      NT26_3425 ftsE; Cell division ABC transpoter (ATP-binding protein)	K09812 ftsE; cell division transport system ATP-binding protein 
D      NT26_2153 pbpB; Penicillin binding protein 2	K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] 
D      NT26_3575 ftsK; DNA translocase	K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family 
D      NT26_2154 conserved protein of unknown function	K03586 ftsL; cell division protein FtsL 
D      NT26_2143 ftsQ; Cell division protein ftsQ homolog	K03589 ftsQ; cell division protein FtsQ 
D      NT26_2148 ftsW; essential cell division protein (stabilizes FtsZ ring)	K03588 ftsW; cell division protein FtsW 
D      NT26_3426 ftsX; Cell division protein	K09811 ftsX; cell division transport system permease protein 
D      NT26_1518 ftsZ; Cell division protein ftsZ homolog 2	K03531 ftsZ; cell division protein FtsZ 
D      NT26_2141 ftsZ; cell division protein FtsZ	K03531 ftsZ; cell division protein FtsZ 
D      NT26_2682 conserved protein of unknown function	K09888 zapA; cell division protein ZapA 
D      NT26_3493 conserved protein of unknown function	K06916 zapE; cell division protein ZapE 
D      NT26_1331 amiC; N-acetylmuramoyl-l-alanine amidase protein	K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] 
D      NT26_3099 acrA; Acriflavine resistance protein A	K03585 acrA; membrane fusion protein, multidrug efflux system 
C    Inhibitors of FtsZ assembly
D      NT26_3815 minC; putative septum site-determining protein minC	K03610 minC; septum site-determining protein MinC 
D      NT26_3814 minD; Septum site-determining protein minD (Cell division inhibitor minD)	K03609 minD; septum site-determining protein MinD 
D      NT26_3813 minE; Cell division topological specificity factor	K03608 minE; cell division topological specificity factor 
C    Other chromosome partitioning proteins
D      NT26_p10005 repA; Replication protein A; ATPase	K03496 parA; chromosome partitioning protein 
D      NT26_p10075 repA; replication protein A	K03496 parA; chromosome partitioning protein 
D      NT26_p10081 conserved hypothetical protein; putative ATPases involved in chromosome partitioning	K03496 parA; chromosome partitioning protein 
D      NT26_2186 ParA chromosome partitioning protein	K03496 parA; chromosome partitioning protein 
D      NT26_p10274 Putative VirC1 family protein; DNA-binding	K03496 parA; chromosome partitioning protein 
D      NT26_3822 parA; chromosome partitioning protein	K03496 parA; chromosome partitioning protein 
D      NT26_p10323 repA; Replication protein A; ATPase	K03496 parA; chromosome partitioning protein 
D      NT26_p10349 replication protein A	K03496 parA; chromosome partitioning protein 
D      NT26_p20011 ATPase involved in chromosome partitioning-like protein	K03496 parA; chromosome partitioning protein 
D      NT26_p10006 repB; Replication protein B	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_p10011 conserved protein of unknown function	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_p10066 ParB domain protein, putative single strand-prefering endonuclease (precurssor)	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_p10076 plasmid partitioning protein RepB	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_p10196 conserved protein of unknown function; ParB domain protein, probable transposase	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_3821 parB; chromosome partitioning protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_p10324 repB; RepB partitioning protein/ParB-like protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_p10350 Plasmid partitioning protein RepB	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      NT26_1184 parC; DNA topoisomerase 4 subunit A	K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] 
D      NT26_1762 gyrB; DNA gyrase subunit B	K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] 
D      NT26_3825 gidA; Glucose-inhibited division protein A	K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme 
D      NT26_3824 rsmG; Ribosomal RNA small subunit methyltransferase G	K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] 
D      NT26_1588 conserved hypothetical protein; putative glucose-inhibited division protein (gid)	K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] 
D      NT26_3482 xerC; Tyrosine recombinase (integrase/recombinase)	K03733 xerC; integrase/recombinase XerC 
D      NT26_3450 xerD; site-specific tyrosine recombinase	K04763 xerD; integrase/recombinase XerD 
D      NT26_p10208 putative transposase, putative Tn554 TpnA-like protein	K04763 xerD; integrase/recombinase XerD 
D      NT26_p10214 intA; putative site-specific integrase IntA	K04763 xerD; integrase/recombinase XerD 
D      NT26_p10215 intB; putative site-specific integrase IntB	K04763 xerD; integrase/recombinase XerD 
D      NT26_p10216 intC; putative site-specific integrase IntC	K04763 xerD; integrase/recombinase XerD 
D      NT26_0438 mrp; Protein mrp homolog	K03593 mrp; ATP-binding protein involved in chromosome partitioning 
D      NT26_p10073 putative cell filamentation protein precursor	K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] 
D      NT26_p10199 conserved protein of unknown function; Fic family protein	K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] 
D      NT26_0052 engB; probable GTP-binding protein engB	K03978 engB; GTP-binding protein 
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#Last updated: May 16, 2024