+F Chromosome and associated proteins KO
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Chromosome and Associated Proteins - Rhizobium johnstonii
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AEukaryotic type
B Sister chromatid cohesion proteins
C Cohesin complex
C Adherin complex
C CTF18-RFC complex
C Fork protection complex
C Other sister chromatid cohesion factors
B Meiosis-specific proteins
C Cohesin complex and associated proteins
C Synaptonemal complex
C DSB formation-related proteins
C Others
B Nucleosome assembly factors
C Histones
C Histone chaperones
D Nucleoplasmins
D NAPs (Nucleosome assembly proteins)
D CAF-1
D FACT complex
D Other Histone chaperones and regulators
C HMG (high mobility group) proteins
B Histone modification proteins
C HATs (histone acetyltransferases)
C HAT complexes
D PCAF complex
D STAGA complex
D TFTC complex
D TIP60 complex
D HBO1 complex
D MOZ/MORF complex
D SAGA complex
D SLIK complex
D ADA-HAT complex
D HAT-A2 complex
D ATAC complex
D HATB complex
D NSL complex
D MSL complex
D NuA3 complex
D NuA4 complex
D SAS complex
C HDACs (histone deacetylases)
D Class I HDACs
D Class II HDACs
D SIRTs (sirtuins, class III HDACs)
D Class IV HDACs
C HDAC complexes
D Sin3A-HDAC complex
D BRAF-HDAC complex
D REST complex
D SHIP complex
D MiDAC complex
D SMART complex
D Other HDAC associated proteins
C HMTs (histone methyltransferases)
D HKMTs (histone lysine methyltransferases)
D PRMTs (protein arginine metyltransferases)
C HMT complexes
D COMPASS/SET1 complex
D COMPASS/SET1 complex (yeast)
D MLL-HCF complex
D MLL3/MLL4 complex
D Dot1-containing complex
C Histone demethylases
C Polycomb repressive complex (PRC) and associated proteins
D Canonical PRC1 (PRC1.2/1.4)
E PRC1.4 specific proteins
D Noncanonical PRC1 (PRC1.1)
D Noncanonical PRC1 (PRC1.3/1.5)
D Noncanonical PRC1 (PRC1.6)
D PRC2.1
D PRC2.2
D PR-DUB complex
D Other PRC associated proteins
C Sir proteins
C Other histone modification proteins
B Chromosome condensation proteins
C Condensin I
C Condensin II
C Other regulators of chromosome condensation
B Centromeric chromatin formation proteins
C Kinetochore proteins
D Centromere proteins
D CPC (chromosomal passenger complex)
D KMN network proteins
E MIS12 complex
E NDC80 complex
D Mis6 complex
D COMA complex
D NMS complex
E NDC80 complex
E MIND kinetochore complex
D MIS16-MIS18 complex
D DASH complex
D CBF3 complex
D Others
C SAC (spindle assembly checkpoint) factors
D Core SAC proteins
D Motor proteins
E RZZ complex
E Dynein complex
D Protein kinases
D Others
C Other centromeric chromatin formation proteins
D Shugoshin
D PP2A (protein phosphatase 2A)
B Heterochromatin formation proteins
C HP1 (heterochromatin protein 1)
C MBPs (metylated DNA binding proteins)
C Other heterochromatin formation proteins
D RL1932 putative modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
B Gene silencing
C RISC (RNA-induced silencing complex)
C piRNA pathway
C RNA interference (RNAi) pathway
D RITS (RNA-induced transcriptional silencing) complex
D RDRC (RNA-directed RNA polymerase complex)
D Other RNAi proteins
C microRNA pathway
D Microprocessor complex
E RL1511 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RISC loading complex
D Other miRNA pathway proteins
C Transposable elements
B Centrosome formation proteins
C Centriole proteins
C Pericentriolar materials (PCM)
D Centriolar satellite
D Other PCM proteins
C Cyclins
C Kinases and associated factors
D Kinase anchoring protein
C Microtubules and associated factors
D gamma-tubulin ring complex
D Other tubulins
D Dynactin complex
D BRISC complex
D Microtubule-associated proteins
C Augmin complex
C Centrosome duplication proteins
D Centriole replication proteins
D Regulators of centriole replication
D Other centrosome duplication proteins
C Nde1-Su48 complex
C LINC complex
C 3M complex
C Other centriole associated proteins
D RL4012 putative fructose-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D RL3581 conserved hypothetical exported protein K07192 FLOT; flotillin
C Spindle formation proteins
B Sister chromatid separation proteins
C Securin and associated proteins
C Separase
C APC/C complex
C Aurora kinases
D Regulators of Aurora kinases
C TACC proteins
C Polo kinases
C Early mitotic inhibitors
B Chromatin remodeling factors
C BAF complex
C PBAF complex
C GBAF(ncBAF) complex
C CHRAC complex
C RSF complex
C WICH complex
C B-WICH complex
C NORC complex
C BRF complex
C NuRD complex
C NuRF complex
C NuRF complex (fruit fly)
C CERF complex
C SRCAP complex
C INO80 complex
C INO80 complex (yeast)
C RSC complex
C SWI/SNF complex
C SWR1 complex
C ASTRA complex
C Other chromatin remodeling factors
D pRL70011 conserved hypothetical protein K26273 SBNO; protein strawberry notch
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AProkaryotic type
B Nucleoid associated proteins
C HNS (histone-like nucleoid structuring protein)
C HU (heat unstable protein)
D RL1691 hupA; putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D pRL70019 hupA2; putative DNA-binding protein Hu-alpha K03530 hupB; DNA-binding protein HU-beta
C IHF (integration host factor)
D RL1640 ihfA; putative integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D RL0417 ihfB; putative integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
C Other nucleoid associated proteins
D pRL90199 conserved hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D RL0375 dnaA; putative chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D RL2391 conserved hypothetical protein K11940 hspQ; heat shock protein HspQ
D RL0342 putative ferritin-family protein K04047 dps; starvation-inducible DNA-binding protein
D RL2284 hfq; putative host factor protein K03666 hfq; host factor-I protein
D RL2857 putative LysR family transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D RL0344 putative AsnC family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D pRL120552 putative AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RL0194 putative AsnC transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D RL1965 aldR; AscN family transcriptional regulator of aldA K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
B Chromosome partitioning proteins
C MukBEF complex
C Condensin-like complex
D RL1084 smc; putative structural maintenance of chromosomes protein K03529 smc; chromosome segregation protein
D RL2044 scpA; putative chromosome segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D RL2045 scpB; putative chromosome segregation and condensation protein B K06024 scpB; segregation and condensation protein B
C Divisome proteins
D RL3299 ftsA; putative cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RL4330 ftsE; putative cell division ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D RL3313 putative penicillin binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RL4563 putative transmembrane DNA translocase K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RL0161 putative cell division DNA translocase protein K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RL3314 conserved hypothetical protein K03586 ftsL; cell division protein FtsL
D RL3300 ftsQ; putative cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D RL3308 ftsW; putative cell division protein FtsW K03588 ftsW; cell division protein FtsW
D RL4331 ftsX; putative cell division protein homolog K09811 ftsX; cell division transport system permease protein
D RL3071 ftsZ2; putative cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RL3298 ftsZ1; putative cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RL4004 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D RL4440 conserved hypothetical protein K06916 zapE; cell division protein ZapE
D RL1742 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D RL2667 putative HlyD family protein K03585 acrA; membrane fusion protein, multidrug efflux system
D RL3874 rmeA; putative RND family transporter K03585 acrA; membrane fusion protein, multidrug efflux system
C Inhibitors of FtsZ assembly
D pRL110546 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D pRL110545 minD; putative septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D pRL110544 minE; putative cell division topological specificity factor K03608 minE; cell division topological specificity factor
C Other chromosome partitioning proteins
D RL3343 parA2; putative partition-related protein K03496 parA; chromosome partitioning protein
D RL4736 parA1; putative chromosome partitioning protein K03496 parA; chromosome partitioning protein
D pRL90001 repAp9; putative replication partitioning protein K03496 parA; chromosome partitioning protein
D pRL80001 repAp8; replication protein RepA K03496 parA; chromosome partitioning protein
D pRL110001 repAp11; putative replication protein A K03496 parA; chromosome partitioning protein
D RL4735 parB; putative chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL70007 putative plasmid stabilisation protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL90002 repBp9; putative replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL80002 repBp8; replication protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL100002 repBp10; putative RepB replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D pRL110002 repBp11; putative replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RL1609 parC; putative topoisomerase IV subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RL2515 gyrB2; putative DNA gyrase subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RL4738 gidA2; putative glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RL4737 gidB; putative glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RL2059 gidA1; putative glucose inhibited division protein A K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D RL4426 xerC; putative tyrosine recombinase K03733 xerC; integrase/recombinase XerC
D RL4354 xerD; putative tyrosine recombinase K04763 xerD; integrase/recombinase XerD
D pRL100153 putative phage integrase/recombinase K04763 xerD; integrase/recombinase XerD
D RL0920 putative ATP-binding mrp family protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RL0452 engB; putative GTP-binding protein K03978 engB; GTP-binding protein
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 16, 2024