+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Aciduliprofundum boonei
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D Aboo_0109 Pre-mRNA processing ribonucleoprotein, binding domain protein K14564 NOP56; nucleolar protein 56
C Box H/ACA snoRNPs
D Aboo_1151 RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
D Aboo_0915 Suppressor Mra1 family protein K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D Aboo_1281 KH domain protein K06961 KRR1; ribosomal RNA assembly protein
B Pre-40S particles
C Kinases
D Aboo_1280 RIO-like kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D Aboo_1227 Adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3]
D Aboo_0355 Protein of unknown function DUF367 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
C Other pre-40S particles
D Aboo_0399 ABC transporter related protein K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
C GTPases
D Aboo_0093 small GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein
C RNases
D RNase MRP
E Aboo_1513 Ribonuclease P, Rpp29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
C Kinases
C Export and cytoplasmic maturation factors
D Aboo_0028 translation initiation factor eIF-6 K03264 EIF6; translation initiation factor 6
D Aboo_1149 NMD3 family protein K07562 NMD3; 60S ribosomal export protein NMD3
D Aboo_0184 Ribosome maturation protein SBDS-like protein K14574 SDO1; ribosome maturation protein SDO1
C 5-FMC complex
C Ribosome quality control proteins
D Aboo_0405 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
D Aboo_1075 AAA family ATPase, CDC48 subfamily K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
B Other ribosome biogenesis factors
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D Aboo_0109 Pre-mRNA processing ribonucleoprotein, binding domain protein K14564 NOP56; nucleolar protein 56
D Aboo_0150 fibrillarin K04795 flpA; fibrillarin-like pre-rRNA processing protein
D Aboo_1236 ribosomal protein L7Ae/L30e/S12e/Gadd45 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D Aboo_1151 RNA-binding protein Nop10p K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
C Aboo_1087 NusA family KH domain protein K02600 nusA; transcription termination/antitermination protein NusA
B rRNA modification factors
C 16S rRNA modification factors
D Aboo_0759 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Aboo_0069 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
C 23S rRNA modification factors
D Aboo_1329 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Aboo_1132 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Aboo_1288 Radical SAM domain protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
B ribosomal protein modification factors
C Aboo_1292 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
B rRNA processing factors
B rRNA helicases
C Aboo_0501 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C Aboo_1550 GTP-binding proten HflX K03665 hflX; GTPase
B Other maturation factors
C Aboo_0755 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C Aboo_1523 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
C Aboo_0538 GTPase of unknown function domain protein K06942 ychF; ribosome-binding ATPase
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 9, 2024