+F Repair protein KO
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DNA Repair and Recombination Proteins - Azotobacter chroococcum
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Achr_9050 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E Achr_29120 Uracil-DNA Glycosylase subunit E K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Achr_36530 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Achr_15170 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D Achr_29290 Hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Achr_38600 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D Achr_5180 O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Achr_9050 phr; Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Achr_19790 putative deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E Achr_29120 Uracil-DNA Glycosylase subunit E K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E Achr_36530 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E Achr_1130 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E Achr_4170 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E Achr_15170 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E Achr_38650 crc; Catabolite repression control protein Crc K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Achr_18890 xth; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E Achr_29650 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E Achr_10870 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E Achr_25290 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Achr_38150 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E Achr_690 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E Achr_34790 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E Achr_24810 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E Achr_20090 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E Achr_3140 Excinuclease cho (Excinuclease ABC alternative C subunit) K05984 cho; excinuclease Cho [EC:3.1.25.-]
E Achr_740 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Achr_e540 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Achr_690 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E Achr_25290 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Achr_38150 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F Achr_35150 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F Achr_35140 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F Achr_34810 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F Achr_38710 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F Achr_28270 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E Achr_11710 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E Achr_33680 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E Achr_11950 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E Achr_10480 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E Achr_33320 xseB-1; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E Achr_11530 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E Achr_20 dnaN; DNA polymerase III beta subunit, central domain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E Achr_30730 holC; DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E Achr_32640 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E Achr_27880 holB; DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E Achr_18270 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Achr_5780 DNA polymerase III epsilon subunit-like 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E Achr_25090 dnaX; DNA-directed DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E Achr_25290 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Achr_38150 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E Achr_740 uvrD; DNA-dependent helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Achr_e540 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E Achr_34770 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E Achr_e1050 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E Achr_f1360 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E Achr_40100 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E Achr_40110 recC; Exodeoxyribonuclease V, gamma subunit (Precursor) K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E Achr_40090 recD; DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E Achr_11730 recA; Recombinase RecA K03553 recA; recombination protein RecA
E Achr_12900 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Achr_12910 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Achr_12890 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E Achr_6540 priA; Primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E Achr_11950 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E Achr_30800 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Achr_30820 Exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E Achr_11730 recA; Recombinase RecA K03553 recA; recombination protein RecA
E Achr_9430 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
E Achr_30 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E Achr_3650 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Achr_280 Transcriptional regulator with HTH domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E Achr_10870 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E Achr_28930 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E Achr_25070 recR; Recombination protein RecR K06187 recR; recombination protein RecR
E Achr_7640 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E Achr_13200 rdgC; Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
E Achr_12900 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E Achr_12910 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E Achr_12890 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E Achr_810 CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI K15342 cas1; CRISP-associated protein Cas1
E Achr_14920 CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E Achr_30800 sbcC; ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E Achr_30820 Exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F Achr_26980 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F Achr_40 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F Achr_28370 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F Achr_3630 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
F Achr_f50 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Achr_f1880 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Achr_f2260 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Achr_22930 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Achr_d430 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Achr_c330 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F Achr_e630 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F Achr_f1370 DNA recombination protein RecT K07455 recT; recombination protein RecT
F Achr_10870 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F Achr_28930 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F Achr_25070 recR; Recombination protein RecR K06187 recR; recombination protein RecR
F Achr_25290 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F Achr_38150 ligB; NAD-dependent DNA ligase LigB K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F Achr_34350 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F Achr_24570 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F Achr_26910 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F Achr_11950 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F Achr_16550 recQ; ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F Achr_34790 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F Achr_24810 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D Achr_12560 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Achr_f1040 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D Achr_f1050 umuD; SOS response UmuD protein, Serine peptidase, MEROPS family S24 K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D Achr_11730 recA; Recombinase RecA K03553 recA; recombination protein RecA
D Achr_28330 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D Achr_7640 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Achr_34770 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Achr_e1050 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Achr_f1360 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D Achr_11740 recX; Regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D Achr_37240 ATP-dependent DNA helicase Rep protein K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D Achr_15490 dinG; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D Achr_29290 Hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Achr_38600 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Achr_15980 nrdA; Ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Achr_570 Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Achr_15970 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024