+E
#
Transcription Machinery - Histoplasma mississippiense
%
!
AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E HCAG_02364 DNA-directed RNA polymerase II largest subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E HCAG_04441 DNA-directed RNA polymerase II 138 kDa polypeptide K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E HCAG_05932 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E HCAG_06417 DNA-directed RNA polymerase II 13.3 kDa polypeptide K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E HCAG_00244 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E HCAG_02811 similar to DNA-directed RNA polymerase II subunit K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E HCAG_07360 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E HCAG_06734 DNA-directed RNA polymerases II 24 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E HCAG_04864 DNA-directed RNA polymerases I K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E HCAG_00906 DNA-directed RNA polymerases i K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E HCAG_01496 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E HCAG_02380 hypothetical protein K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E HCAG_01022 transcription initiation factor IIA gamma chain K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E HCAG_08803 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E HCAG_00082 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E HCAG_03746 hypothetical protein K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48]
E HCAG_02781 transcription initiation factor TFIId 127kD subunit K03128 TAF2; transcription initiation factor TFIID subunit 2
E HCAG_08300 hypothetical protein K14650 TAF3; transcription initiation factor TFIID subunit 3
E HCAG_04750 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E HCAG_00556 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E HCAG_08301 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E HCAG_02360 hypothetical protein K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E HCAG_00857 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E HCAG_01248 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E HCAG_01955 hypothetical protein K03127 TAF13; transcription initiation factor TFIID subunit 13
E HCAG_02611 hypothetical protein K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit
D TFIIE
E HCAG_07353 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E HCAG_05207 hypothetical protein K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E HCAG_07638 hypothetical protein K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E HCAG_02833 hypothetical protein K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E HCAG_01528 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E HCAG_06934 suppressor of stem-loop protein 1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E HCAG_00846 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E HCAG_07759 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E HCAG_00496 similar to DNA repair helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E HCAG_06715 DNA repair helicase RAD3 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E HCAG_08910 DNA repair protein Rex1 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E HCAG_04046 serine/threonine-protein kinase crk1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E HCAG_07073 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
E HCAG_02903 hypothetical protein K06634 CCNH; cyclin H
C Mediator complex
D Head
E HCAG_08217 hypothetical protein K15128 MED6; mediator of RNA polymerase II transcription subunit 6
E HCAG_06221 hypothetical protein K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type
E HCAG_07492 hypothetical protein K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type
D Middle
E HCAG_05653 hypothetical protein K15147 MED5; mediator of RNA polymerase II transcription subunit 5
E HCAG_05801 hypothetical protein K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E HCAG_00169 hypothetical protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E HCAG_05970 hypothetical protein K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E HCAG_08791 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E HCAG_03627 hypothetical protein K15156 MED14; mediator of RNA polymerase II transcription subunit 14
E HCAG_03416 hypothetical protein K15160 SIN4; mediator of RNA polymerase II transcription subunit 16, fungi type
D CDK-module
E HCAG_01109 serine/threonine-protein kinase prk1 K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E HCAG_01174 hypothetical protein K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type
E HCAG_05817 hypothetical protein K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E HCAG_06079 histone acetyltransferase GCN5 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E HCAG_02224 histone acetyltransferase GCN5 K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E HCAG_00425 hypothetical protein K08874 TRRAP; transformation/transcription domain-associated protein
E HCAG_06728 spt3 K11313 SUPT3H; transcription initiation protein SPT3
E HCAG_08771 hypothetical protein K11359 SPT7; transcriptional activator SPT7
E HCAG_00659 hypothetical protein K11360 SPT8; transcriptional activator SPT8
E HCAG_02203 hypothetical protein K11361 SPT20; transcription factor SPT20
E HCAG_03644 hypothetical protein K11362 HFI1; transcriptional coactivator HFI1/ADA1
E HCAG_08722 hypothetical protein K11314 TADA2A; transcriptional adapter 2-alpha
E HCAG_03602 hypothetical protein K11315 TADA3; transcriptional adapter 3
E HCAG_02781 transcription initiation factor TFIId 127kD subunit K03128 TAF2; transcription initiation factor TFIID subunit 2
E HCAG_04750 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E HCAG_00556 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E HCAG_08301 hypothetical protein K03132 TAF7; transcription initiation factor TFIID subunit 7
E HCAG_02360 hypothetical protein K03133 TAF9B; transcription initiation factor TFIID subunit 9B
E HCAG_00857 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E HCAG_01248 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E HCAG_08435 hypothetical protein K11364 SGF29; SAGA-associated factor 29
E HCAG_07296 hypothetical protein K11365 SGF73; SAGA-associated factor 73
E HCAG_03376 similar to chromodomain helicase Chd1 K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E HCAG_05242 hypothetical protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E HCAG_05173 hypothetical protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E HCAG_06525 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E HCAG_03851 hypothetical protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E HCAG_06559 hypothetical protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
D SWI/SNF complex
E HCAG_00042 hypothetical protein K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1
E HCAG_06525 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E HCAG_07582 hypothetical protein K11768 ARP9; actin-related protein 9
E HCAG_02611 hypothetical protein K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit
D RSC complex
E HCAG_03520 hypothetical protein K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2
E HCAG_00073 hypothetical protein K11761 NPL6; chromatin structure-remodeling complex protein RSC7
E HCAG_05669 hypothetical protein K11763 RSC9; chromatin structure-remodeling complex subunit RSC9
E HCAG_07582 hypothetical protein K11768 ARP9; actin-related protein 9
E HCAG_08941 hypothetical protein K11770 SFH1; chromatin structure-remodeling complex subunit SFH1
D Others
E HCAG_05664 hypothetical protein K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15
C Other transcription-related factors
D Transcription elongation factors
E HCAG_01901 hypothetical protein K03145 TFIIS; transcription elongation factor S-II
E HCAG_08376 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E HCAG_06230 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
E HCAG_03460 hypothetical protein K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E HCAG_09100 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E HCAG_00822 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E HCAG_02152 similar to cleavage and polyadenylation specifity factor, 73 kDa subunit K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E HCAG_04743 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E HCAG_00807 similar to type 1 protein phosphtase-I K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E HCAG_04841 serine/threonine-protein phosphatase PP1 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E HCAG_07996 serine/threonine-protein phosphatase PP-Z K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E HCAG_02724 hypothetical protein K06100 SYMPK; symplekin
E HCAG_04482 similar to Ssu72p K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E HCAG_06875 hypothetical protein K14845 RAI1; RAT1-interacting protein
E HCAG_01327 hypothetical protein K15559 RTT103; regulator of Ty1 transposition protein 103
E HCAG_06979 hypothetical protein K15560 NRD1; protein NRD1
E HCAG_03214 hypothetical protein K10706 SETX; senataxin [EC:5.6.2.-]
E HCAG_07345 peptidyl-prolyl cis-trans isomerase ssp-1 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E HCAG_08069 hypothetical protein K15174 PAF1; RNA polymerase II-associated factor 1
E HCAG_07839 hypothetical protein K15175 CDC73; parafibromin
E HCAG_03024 hypothetical protein K15176 CTR9; RNA polymerase-associated protein CTR9
E HCAG_01970 hypothetical protein K15177 LEO1; RNA polymerase-associated protein LEO1
E HCAG_08845 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
D Super elongation complex (SEC)
E HCAG_06084 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
D Little elongation complex (LEC)
E HCAG_06084 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
D Brd4/P-TEFb complex
D BUR kinase complex
E HCAG_00078 hypothetical protein K15563 BUR2; protein BUR2
D CTDK-I complex
E HCAG_00490 similar to cyclin-dependent kinase 9 K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23]
E HCAG_01366 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E HCAG_03901 hypothetical protein K15565 CTK3; CTD kinase subunit gamma
D 7SK RNP complex
D DBIRD complex
D Others
E HCAG_00186 hypothetical protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E HCAG_07581 hypothetical protein K21751 DR1; down-regulator of transcription 1
E HCAG_04018 hypothetical protein K21752 DRAP1; Dr1-associated corepressor
E HCAG_00038 hypothetical protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E HCAG_04820 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E HCAG_03433 hypothetical protein K17498 SPN1; transcription factor SPN1
E HCAG_01284 hypothetical protein K20826 RPAP1; RNA polymerase II-associated protein 1
E HCAG_08091 hypothetical protein K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16]
E HCAG_06889 transcriptional repressor TUP1 K06666 TUP1; general transcriptional corepressor TUP1
E HCAG_03931 hypothetical protein K06665 SSN6; general transcriptional corepressor CYC8
E HCAG_03207 hypothetical protein K12412 MCM1; pheromone receptor transcription factor
E HCAG_03429 hypothetical protein K24104 GPN; GPN-loop GTPase
E HCAG_01519 gro-1 operon protein 2 K24104 GPN; GPN-loop GTPase
E HCAG_04936 similar to protein required for cell viability K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E HCAG_08895 DNA-directed RNA polymerase III largest subunit K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E HCAG_06971 DNA-directed RNA polymerase III 130 kDa polypeptide K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E HCAG_04624 DNA-directed RNA polymerases I and III 40 kDa polypeptide K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E HCAG_08226 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E HCAG_06997 hypothetical protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E HCAG_06446 hypothetical protein K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E HCAG_04472 hypothetical protein K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E HCAG_02929 hypothetical protein K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E HCAG_08797 hypothetical protein K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E HCAG_06734 DNA-directed RNA polymerases II 24 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E HCAG_04864 DNA-directed RNA polymerases I K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E HCAG_00906 DNA-directed RNA polymerases i K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E HCAG_01496 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
C Basal transcription factors
D TFIIIA
E HCAG_04863 hypothetical protein K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E HCAG_00082 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E HCAG_06637 hypothetical protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
E HCAG_08245 hypothetical protein K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E HCAG_04846 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E HCAG_00422 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
D TFIIIC, fungi type
E HCAG_00422 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E HCAG_04846 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E HCAG_00112 hypothetical protein K15205 TFC6; transcription factor C subunit 6
E HCAG_02271 hypothetical protein K15206 TFC7; transcription factor C subunit 7
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
E HCAG_01155 hypothetical protein K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E HCAG_05909 DNA-directed RNA polymerase I polypeptide 2 K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E HCAG_04624 DNA-directed RNA polymerases I and III 40 kDa polypeptide K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E HCAG_08226 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E HCAG_01938 hypothetical protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E HCAG_04427 hypothetical protein K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
D Pol I, II, III common subunits
E HCAG_06734 DNA-directed RNA polymerases II 24 kDa polypeptide K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E HCAG_04864 DNA-directed RNA polymerases I K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
E HCAG_00906 DNA-directed RNA polymerases i K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E HCAG_01496 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
C Basal transcription factors
D SL1/TIF-1B
E HCAG_00082 TATA-box binding protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E HCAG_04703 RNA polymerase I-specific transcription initiation factor RRN3 family protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E HCAG_03852 hypothetical protein K15217 RRN5; RNA polymerase I-specific transcription initiation factor RRN5
E HCAG_02003 hypothetical protein K15218 RRN6; RNA polymerase I-specific transcription initiation factor RRN6
E HCAG_06020 hypothetical protein K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7
E HCAG_08046 hypothetical protein K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11
E HCAG_03285 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E HCAG_08376 hypothetical protein K15171 SUPT4H1; transcription elongation factor SPT4
E HCAG_06230 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E HCAG_07060 chromatin remodelling complex ATPase chain ISW1 K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
E HCAG_00490 similar to cyclin-dependent kinase 9 K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23]
E HCAG_01366 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E HCAG_03901 hypothetical protein K15565 CTK3; CTD kinase subunit gamma
D Transcription termination factors
D Others
#
AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E HCAG_08803 transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E HCAG_07353 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024