+F Repair protein KO #

  DNA Repair and Recombination Proteins - Alteromonas mediterranea DE1

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D amad1_19170 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D amad1_10790 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D amad1_10800 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E amad1_15405 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E amad1_01370 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E amad1_06490 Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D amad1_01030 putative S1/P1 Nuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D amad1_15055 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D amad1_19170 Methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D amad1_10790 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D amad1_10800 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D amad1_10805 deoxyribodipyrimidine photolyase-like protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E amad1_15405 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E amad1_19175 ada regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E amad1_01370 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E amad1_00045 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E amad1_00275 formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E amad1_06490 Endonuclease III/Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E amad1_08390 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E amad1_03720 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E amad1_10190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E amad1_00075 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E amad1_01080 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E amad1_15425 putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E amad1_06535 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E amad1_10975 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E amad1_21743 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E amad1_00975 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E amad1_00075 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E amad1_10190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F amad1_18535 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F amad1_18530 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F amad1_17885 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F amad1_00710 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F amad1_08355 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E amad1_04590 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E amad1_18795 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E amad1_03065 DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E amad1_08515 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E amad1_13715 exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E amad1_13310 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E amad1_04900 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E amad1_00015 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E amad1_15995 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E amad1_09775 putative DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E amad1_09130 DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E amad1_19400 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E amad1_05810 DNA polymerase III, epsilon subunit-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E amad1_17470 putative DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E amad1_08960 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase E amad1_10190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E amad1_21743 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E amad1_00975 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E amad1_01135 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E amad1_06125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E amad1_16060 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E amad1_02285 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E amad1_11920 exodeoxyribonuclease V subunit beta K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E amad1_11925 exodeoxyribonuclease V subunit gamma K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E amad1_11915 exodeoxyribonuclease V subunit alpha K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E amad1_04600 recombinase A K03553 recA; recombination protein RecA E amad1_06910 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E amad1_06915 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E amad1_06905 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E amad1_18270 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E amad1_20490 flavodoxin K02317 dnaT; DNA replication protein DnaT E amad1_08515 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E amad1_04215 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E amad1_04210 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E amad1_04600 recombinase A K03553 recA; recombination protein RecA E amad1_13385 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E amad1_00020 recombinational DNA repair ATPase K03629 recF; DNA replication and repair protein RecF E amad1_00730 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E amad1_03720 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E amad1_03730 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E amad1_13150 recombination protein RecR K06187 recR; recombination protein RecR E amad1_07440 DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E amad1_21963 hypothetical protein K03554 rdgC; recombination associated protein RdgC E amad1_03545 rdgC; recombination associated protein K03554 rdgC; recombination associated protein RdgC E amad1_06910 Holliday junction DNA helicase motor protein K03550 ruvA; holliday junction DNA helicase RuvA E amad1_06915 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E amad1_06905 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E amad1_04215 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E amad1_04210 exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F amad1_11145 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F amad1_00025 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F amad1_09910 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F amad1_13635 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F amad1_08575 RecT protein K07455 recT; recombination protein RecT F amad1_03720 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F amad1_03730 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F amad1_13150 recombination protein RecR K06187 recR; recombination protein RecR F amad1_10190 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F amad1_19445 transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F amad1_08320 ihfA; integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F amad1_11115 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F amad1_08515 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F amad1_14555 RecQ domain-containing protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F amad1_00955 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F amad1_02910 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F amad1_01080 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F amad1_15425 putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F amad1_06535 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F amad1_11560 DNA-binding protein, H-NS family K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D amad1_17335 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D amad1_21303 umuC protein K03502 umuC; DNA polymerase V D amad1_05800 DNA repair protein K03502 umuC; DNA polymerase V D amad1_21298 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] D amad1_05805 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D amad1_04600 recombinase A K03553 recA; recombination protein RecA D amad1_19945 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D amad1_07440 DNA repair ATPase RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D amad1_16910 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D amad1_00190 DNA repair nucleotidyltransferase/DNA polymerase K14161 imuB; protein ImuB D amad1_00185 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D amad1_01135 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D amad1_06125 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D amad1_05475 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D amad1_00360 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D amad1_12995 ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D amad1_18680 ATP-dependent RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D amad1_15055 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D amad1_11155 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D amad1_11160 nrdB; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024