+E Ribosome biogenesis KO
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Ribosome Biogenesis - Amphibacillus xylanus
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D AXY_15300 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C AXY_11150 era; GTP-binding protein Era K03595 era; GTPase
C AXY_10270 obg; GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C AXY_14610 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C AXY_11740 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
C AXY_01090 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D AXY_08840 rsuA; pseudouridine synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D AXY_00440 ksgA; 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D AXY_15450 putative rRNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D AXY_01140 putative methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D AXY_16050 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D AXY_11030 rsmE; ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D AXY_24050 rsmG; ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D AXY_15950 mraW; methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D AXY_00380 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D AXY_11790 putative hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D AXY_01040 putative rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D AXY_23590 rlmH; ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D AXY_07050 rlmN; ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D AXY_11790 putative hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D AXY_04540 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AXY_14070 putative RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D AXY_12150 rluB; pseudouridine synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D AXY_17210 putative pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AXY_17800 putative pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AXY_23030 putative pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D AXY_15660 rluD; pseudouridine synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C AXY_03620 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C AXY_17230 putative acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
C AXY_15220 rimM; ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
C AXY_11020 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C AXY_15300 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C AXY_10220 putative ribonuclease K08301 rng; ribonuclease G [EC:3.1.26.-]
C AXY_10700 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C AXY_01030 hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C AXY_03390 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C AXY_11260 putative ATP-dependent RNA helicase K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
B GTPases
C AXY_11150 era; GTP-binding protein Era K03595 era; GTPase
C AXY_15420 rsgA; putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C AXY_12330 engA; GTP-binding protein EngA K03977 engA; GTPase
C AXY_10270 obg; GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C AXY_15180 putative GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
C AXY_14210 hflX; putative GTP-binding protein HflX K03665 hflX; GTPase
C AXY_10810 putative GTP-binding protein K06948 yqeH; 30S ribosome assembly GTPase
B Other maturation factors
C AXY_20550 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C AXY_10490 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C AXY_14560 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C AXY_14620 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
C AXY_00030 hypothetical protein K14761 rlbA; ribosome-associated protein
C AXY_10860 hypothetical protein K09710 ybeB; ribosome-associated protein
C AXY_11130 putative metalloprotease K07042 ybeY; probable rRNA maturation factor
C AXY_10830 hypothetical protein K07574 yhbY; RNA-binding protein
C AXY_06630 putative ribosome-associated protein K05808 hpf; ribosome hibernation promoting factor
C AXY_23980 engD; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
C AXY_16000 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024