+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Bacillus atrophaeus
%
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
D Cap binding complex
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
D Pre-mRNA cleavage factor IIm (CFIIm)
D Cleavage and polyadenylation specificity factor (CPSF) complex
D Cleavage stimulation factor (CSTF) complex
D U7-dependent histone pre-mRNA processing factors
D DRB sensitivity inducing factor (DSIF) complex
D N6-methyltransferase complex
D Poly(A) addition factors
D Negative regulators of mRNA 3' end processing
C Other processing factors
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
D TREX complex
D TREX-2 complex
D Nuclear pore complex
D Ran-mediated transport factors
D eIF4F and regulatory proteins
D APOBEC1-ACF complex
D Other transport factors
C Surveillance factors
D Surveillance complex
D Protein phosphatase 2A
D Other surveillance factors
C Factors involved in mRNA localization
D Cargo complex
D Factors that have mRNA localization signals
D Trans-acting binding proteins
D Other mRNA localization factors
C mRNA cycle factors
D Common to processing body (P body) and stress granule
D P-body specific factors
D Stress granule specific factors
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
D Lsm complex
D 5' exonucleases
D Other 5'-3' decay factors
C 3'-5' decay
D Core exosome factors
D Exosome cofactors
D TRAMP complex
D Ski complex
D Ccr4-NOT complex
D Pan complex
D Other 3'-5' decay factors
C Other degradation factors
D RNases
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E BATR1942_05760 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E BATR1942_06195 ribonuclease J2 K12574 rnj; ribonuclease J [EC:3.1.-.-]
E BATR1942_05030 YkqC K12574 rnj; ribonuclease J [EC:3.1.-.-]
E BATR1942_06280 phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-]
E BATR1942_14770 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
E BATR1942_02590 3'-5' exoribonuclease YhaM K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D Helicases
E BATR1942_17575 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E BATR1942_21030 ATP-dependent RNA helicase; cold shock K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
E BATR1942_10880 ATP-dependent RNA helicase; cold shock K18692 cshB; ATP-dependent RNA helicase CshB [EC:5.6.2.7]
E BATR1942_09390 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
E BATR1942_08295 putative ATP-dependent nucleic acid helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Other RNA degradosome components
E BATR1942_14930 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E BATR1942_06150 polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E BATR1942_16500 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
E BATR1942_12380 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E BATR1942_11045 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
E BATR1942_00535 groEL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
E BATR1942_06480 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Others
E BATR1942_15580 carbon storage regulator K03563 csrA; carbon storage regulator
E BATR1942_15290 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
D Cofactors
D Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024