+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bordetella bronchiseptica MO149

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BN115_4190 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BN115_4340 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BN115_0198 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BN115_3199 putative methypurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BN115_4129 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BN115_3457 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BN115_4104 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BN115_2872 dnaS; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BN115_4190 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BN115_4340 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BN115_1190 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BN115_4339 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E BN115_0198 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BN115_3480 bacteriophage-related DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BN115_1191 DNA-3-methyladenine glycosylase 1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BN115_1638 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BN115_3199 putative methypurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BN115_4129 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BN115_3835 putative hydrolase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BN115_0866 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BN115_3457 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BN115_4211 putative endonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BN115_2626 putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BN115_2800 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BN115_3476 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BN115_1912 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BN115_3721 uvrA2; putative excinuclease ABC subunit K03701 uvrA; excinuclease ABC subunit A E BN115_0073 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E BN115_2823 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E BN115_1808 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BN115_1712 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN115_2858 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN115_1912 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BN115_3476 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BN115_0014 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BN115_0015 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BN115_0055 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BN115_2176 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BN115_3490 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BN115_1619 mutS; mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BN115_3747 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BN115_3024 xseA; exodeoxyribonuclease large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BN115_3127 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BN115_3188 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BN115_4644 dnaN; DNA polymerase iii, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BN115_3409 conserved hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BN115_1772 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BN115_2485 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BN115_3957 dnaQ; DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BN115_1753 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BN115_1397 dnazX; DNA polymerase III subunit Tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BN115_3476 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BN115_1712 probable ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN115_2858 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BN115_0075 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BN115_2960 recA; RecA protein K03553 recA; recombination protein RecA E BN115_3692 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E BN115_3695 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BN115_3691 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BN115_4277 putative primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BN115_3122 priB; primosomal replication protein n K02686 priB; primosomal replication protein N E BN115_1152 chromosome segregation protein smc K03546 sbcC; DNA repair protein SbcC/Rad50 D RecFOR pathway proteins E BN115_2960 recA; RecA protein K03553 recA; recombination protein RecA E BN115_1885 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E BN115_2205 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BN115_2800 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BN115_3416 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E BN115_1399 recR; recombination protein RecR K06187 recR; recombination protein RecR E BN115_3617 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E BN115_2975 conserved hypothetical protein K03554 rdgC; recombination associated protein RdgC E BN115_3692 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E BN115_3695 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BN115_3691 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E BN115_1152 chromosome segregation protein smc K03546 sbcC; DNA repair protein SbcC/Rad50 E BN115_3164 conserved ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BN115_2301 putative membrane protein K10979 ku; DNA end-binding protein Ku E BN115_2300 Putative ATP-dependent DNA-ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BN115_3261 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BN115_4643 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor F BN115_3056 hupB; DNA-binding protein Hu-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BN115_2800 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BN115_3416 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F BN115_1399 recR; recombination protein RecR K06187 recR; recombination protein RecR F BN115_3476 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BN115_3689 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F BN115_2994 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F BN115_3254 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F BN115_3696 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BN115_3721 uvrA2; putative excinuclease ABC subunit K03701 uvrA; excinuclease ABC subunit A F BN115_0073 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F BN115_2823 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F BN115_3105 putative DNA-binding protein (histone) K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BN115_2060 dinP; DNA-damage-inducible protein p K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BN115_2960 recA; RecA protein K03553 recA; recombination protein RecA D BN115_2825 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BN115_3617 DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D BN115_2067 conserved hypothetical protein K14160 imuA; protein ImuA D BN115_2066 conserved hypothetical protein K14161 imuB; protein ImuB D BN115_2065 putative DNA polymerase III alpha chain K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BN115_0075 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D BN115_2959 RecX-family regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BN115_4276 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D BN115_3323 probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BN115_4104 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BN115_2872 dnaS; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BN115_4052 nrdA; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BN115_4053 nrdB; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024