+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia orbicola

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Bcenmc03_4072 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Bcenmc03_2584 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Bcenmc03_2196 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Bcenmc03_0501 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Bcenmc03_2786 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Bcenmc03_2808 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Bcenmc03_2350 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E Bcenmc03_5966 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Bcenmc03_0542 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_3522 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_4233 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_6153 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_2004 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_1638 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_2540 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Bcenmc03_4072 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Bcenmc03_2584 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Bcenmc03_3171 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Bcenmc03_2196 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Bcenmc03_0501 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E Bcenmc03_2787 Uracil-DNA glycosylase superfamily K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E Bcenmc03_6057 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Bcenmc03_2062 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Bcenmc03_2096 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Bcenmc03_3170 AlkA domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Bcenmc03_4071 transcriptional regulator, AraC family K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Bcenmc03_2786 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E Bcenmc03_2808 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Bcenmc03_0227 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E Bcenmc03_2809 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Bcenmc03_2350 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Bcenmc03_2163 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E Bcenmc03_3121 exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E Bcenmc03_2134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Bcenmc03_2044 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Bcenmc03_3655 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Bcenmc03_2790 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Bcenmc03_6472 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Bcenmc03_2234 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Bcenmc03_1101 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Bcenmc03_1420 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Bcenmc03_3655 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Bcenmc03_2044 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Bcenmc03_0319 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Bcenmc03_0320 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Bcenmc03_0353 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Bcenmc03_0960 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Bcenmc03_1968 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Bcenmc03_2107 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E Bcenmc03_0734 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Bcenmc03_2568 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Bcenmc03_3650 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Bcenmc03_2336 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Bcenmc03_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Bcenmc03_2470 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E Bcenmc03_0623 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Bcenmc03_1915 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Bcenmc03_1255 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Bcenmc03_0966 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Bcenmc03_2007 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Bcenmc03_1851 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Bcenmc03_2044 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Bcenmc03_1420 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Bcenmc03_2788 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Bcenmc03_0010 DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Bcenmc03_1188 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E Bcenmc03_1187 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E Bcenmc03_1189 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Bcenmc03_2681 recA protein K03553 recA; recombination protein RecA E Bcenmc03_0656 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Bcenmc03_0655 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Bcenmc03_0657 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Bcenmc03_0127 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Bcenmc03_1896 primosomal replication protein N-like protein K02686 priB; primosomal replication protein N E Bcenmc03_7073 serine/threonine protein kinase K04067 priC; primosomal replication protein N'' D RecFOR pathway proteins E Bcenmc03_2681 recA protein K03553 recA; recombination protein RecA E Bcenmc03_2057 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Bcenmc03_0692 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Bcenmc03_2134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Bcenmc03_1094 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Bcenmc03_1849 recombination protein RecR K06187 recR; recombination protein RecR E Bcenmc03_0713 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Bcenmc03_5879 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E Bcenmc03_0656 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Bcenmc03_0655 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Bcenmc03_0657 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E Bcenmc03_6072 Ku protein K10979 ku; DNA end-binding protein Ku E Bcenmc03_6073 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Bcenmc03_0999 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Bcenmc03_0003 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Bcenmc03_6487 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Bcenmc03_0084 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Bcenmc03_2134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Bcenmc03_1094 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Bcenmc03_1849 recombination protein RecR K06187 recR; recombination protein RecR F Bcenmc03_2044 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F Bcenmc03_0659 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F Bcenmc03_1458 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F Bcenmc03_1007 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F Bcenmc03_0321 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Bcenmc03_2790 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Bcenmc03_6472 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Bcenmc03_2234 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B F Bcenmc03_0231 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_5567 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_5060 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_6790 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_6525 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_4746 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_4282 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_0263 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_4633 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_6589 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_6755 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F Bcenmc03_6929 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D Bcenmc03_2160 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D Bcenmc03_2681 recA protein K03553 recA; recombination protein RecA D Bcenmc03_1577 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D Bcenmc03_0713 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Bcenmc03_4331 DNA polymerase B region K02336 polB; DNA polymerase II [EC:2.7.7.7] D Bcenmc03_2839 conserved hypothetical protein K14160 imuA; protein ImuA D Bcenmc03_2838 conserved hypothetical protein K14161 imuB; protein ImuB D Bcenmc03_2837 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D Bcenmc03_2788 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Bcenmc03_2680 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D Bcenmc03_3298 PHP domain protein K02347 polX; DNA polymerase (family X) C DNA helicases D Bcenmc03_0163 UvrD/REP helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D Bcenmc03_1819 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Bcenmc03_3338 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D Bcenmc03_0542 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_3522 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_4233 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_6153 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_2004 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_1638 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Bcenmc03_2540 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Bcenmc03_0564 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Bcenmc03_0565 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024