+F Repair protein KO
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DNA Repair and Recombination Proteins - Brucella abortus S19
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BAbS19_I01760 Methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BAbS19_I04820 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BAbS19_I01570 Nth, endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BAbS19_I18190 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BAbS19_I15780 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BAbS19_I01760 Methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BAbS19_II03280 hypothetical ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BAbS19_I03680 Ada, ada regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BAbS19_II06570 2OG-Fe(II) oxygenase superfamily K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E BAbS19_I06250 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BAbS19_I06040 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BAbS19_I15540 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BAbS19_I04820 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BAbS19_II01700 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BAbS19_I20450 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BAbS19_I01570 Nth, endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BAbS19_I18790 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BAbS19_I08320 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BAbS19_I12030 Phosphoesterase, RecJ-like protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BAbS19_I13460 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BAbS19_I01140 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BAbS19_I10460 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BAbS19_I14270 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BAbS19_I06730 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BAbS19_I13390 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BAbS19_I01140 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BAbS19_I13460 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BAbS19_I11790 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BAbS19_I11780 RNA polymerase, alpha subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BAbS19_I11470 RNA polymerase, alpha chain, bacterial and organelle K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BAbS19_I06280 RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BAbS19_II06180 Mfd, transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BAbS19_I01380 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BAbS19_II02020 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BAbS19_II04490 Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BAbS19_I04220 Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BAbS19_I07870 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BAbS19_I00020 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BAbS19_I06640 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BAbS19_I19260 putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BAbS19_I09390 Replication factor C conserved domain protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BAbS19_I19400 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BAbS19_II05760 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BAbS19_II08960 Exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BAbS19_I00300 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BAbS19_I13460 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BAbS19_I13390 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BAbS19_I10450 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BAbS19_I11400 RecA bacterial DNA recombination protein K03553 recA; recombination protein RecA
E BAbS19_I16030 Bacterial DNA recombination protein, RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BAbS19_I16020 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BAbS19_I16040 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BAbS19_I16930 DEAD/DEAH box helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E BAbS19_I11400 RecA bacterial DNA recombination protein K03553 recA; recombination protein RecA
E BAbS19_I04390 RadA, DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BAbS19_I00030 recombination protein F K03629 recF; DNA replication and repair protein RecF
E BAbS19_II06160 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BAbS19_I12030 Phosphoesterase, RecJ-like protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BAbS19_I06400 Recombination protein O, RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E BAbS19_I00280 recombination protein RecR K06187 recR; recombination protein RecR
E BAbS19_I13470 ATP/GTP-binding site motif A (P-loop) K03631 recN; DNA repair protein RecN (Recombination protein N)
E BAbS19_I16030 Bacterial DNA recombination protein, RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BAbS19_I16020 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BAbS19_I16040 Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E BAbS19_I19690 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E BAbS19_I19680 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E BAbS19_I05490 ATP/GTP-binding site motif A (P-loop) K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BAbS19_I10400 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BAbS19_I01160 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BAbS19_II05940 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BAbS19_I10470 Histone-like bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BAbS19_I12030 Phosphoesterase, RecJ-like protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BAbS19_I06400 Recombination protein O, RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F BAbS19_I00280 recombination protein RecR K06187 recR; recombination protein RecR
F BAbS19_I13460 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BAbS19_I07480 Integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
F BAbS19_I01450 Histone-like bacterial DNA-binding protein K05788 ihfB; integration host factor subunit beta
E Supressor
F BAbS19_I10460 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BAbS19_I14270 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BAbS19_II05840 UMUC-like DNA-repair protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D BAbS19_I11400 RecA bacterial DNA recombination protein K03553 recA; recombination protein RecA
D BAbS19_I10840 Peptidase family S24 K01356 lexA; repressor LexA [EC:3.4.21.88]
D BAbS19_I13470 ATP/GTP-binding site motif A (P-loop) K03631 recN; DNA repair protein RecN (Recombination protein N)
D BAbS19_I00650 hypothetical protein K14160 imuA; protein ImuA
D BAbS19_I00640 hypothetical protein K14161 imuB; protein ImuB
D BAbS19_I00630 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BAbS19_I10450 Single-strand binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D BAbS19_II03840 ATP-dependent RNA helicase, DEAD/DEAH box family K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D BAbS19_I18190 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BAbS19_I15780 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BAbS19_II08180 ribonucleotide-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BAbS19_I09860 Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BAbS19_II08170 Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024