+E Ribosome biogenesis KO
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Ribosome Biogenesis - Burkholderia multivorans ATCC 17616 (Tohoku)
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BMULJ_01071 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D BMULJ_01014 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BMULJ_01072 era; GTP-binding protein K03595 era; GTPase
C BMULJ_00437 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BMULJ_00146 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C BMULJ_04120 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C BMULJ_01484 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C BMULJ_00791 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C BMULJ_03018 nusG; transcriptional antiterminator K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BMULJ_02452 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D BMULJ_02670 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BMULJ_00110 sun; Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BMULJ_02474 sun; Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BMULJ_02762 putative N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BMULJ_00486 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BMULJ_03171 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BMULJ_00394 mraW; S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BMULJ_01053 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BMULJ_03068 methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
C 23S rRNA modification factors
D BMULJ_01558 yjfH; TrmH family RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BMULJ_01219 ftsJ; cell division protein methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D BMULJ_02285 ybeA; conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BMULJ_00149 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D BMULJ_02195 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D BMULJ_00561 putative N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D BMULJ_01782 Cfr family radical SAM enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BMULJ_01787 SAM-dependent methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BMULJ_01482 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BMULJ_01049 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D BMULJ_01761 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D BMULJ_02491 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D BMULJ_01993 rluF; ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C BMULJ_02014 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BMULJ_01006 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C BMULJ_01754 putative 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C BMULJ_00456 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C BMULJ_02003 yfcB; putative adenine-specific DNA-methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C BMULJ_02070 cupin superfamily protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C BMULJ_01071 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BMULJ_01048 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12]
C BMULJ_02287 rng; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C BMULJ_00715 yqqF; putative holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C BMULJ_03280 dbpA; ATP-independent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
B GTPases
C BMULJ_01072 era; GTP-binding protein K03595 era; GTPase
C BMULJ_01012 engC; GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C BMULJ_01776 engA; GTP-binding protein K03977 engA; GTPase
C BMULJ_00437 obg; GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C BMULJ_01774 hflX; GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C BMULJ_02584 sua5; putative translation factor K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BMULJ_06164 spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BMULJ_00837 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BMULJ_01486 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BMULJ_01483 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C BMULJ_01028 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
C BMULJ_02284 iojap domain protein K09710 ybeB; ribosome-associated protein
C BMULJ_02658 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
C BMULJ_01218 putative RNA-binding protein containing KH domain K07574 yhbY; RNA-binding protein
C BMULJ_01016 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C BMULJ_02736 yhbH; putative sigma54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C BMULJ_00363 probable translation factor K06942 ychF; ribosome-binding ATPase
C BMULJ_01055 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024