+F Repair protein KO
#
DNA Repair and Recombination Proteins - Burkholderia multivorans ATCC 17616 (Tohoku)
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BMULJ_02524 ada; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BMULJ_03350 ada; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BMULJ_05675 phrB; deoxyribodipyrimidine photo lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D BMULJ_03823 phrB; deoxyribodipyrimidine photo lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BMULJ_00368 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BMULJ_02741 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BMULJ_02314 nth; endonuclease III-related protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E BMULJ_04273 putative ATP-dependent DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BMULJ_00414 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_01667 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_04405 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_01956 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_05978 putative oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_02480 dut; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BMULJ_02524 ada; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BMULJ_03350 ada; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BMULJ_00084 ada; methylated-DNA-[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D BMULJ_05675 phrB; deoxyribodipyrimidine photo lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D BMULJ_03823 phrB; deoxyribodipyrimidine photo lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D BMULJ_05679 conserved hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E BMULJ_00368 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BMULJ_06035 dpo; bacteriophage-type DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BMULJ_02013 dpo; bacteriophage-type DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BMULJ_00085 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BMULJ_02051 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BMULJ_03351 ada; methylated-DNA-[protein]-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BMULJ_02741 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BMULJ_03110 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E BMULJ_02742 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BMULJ_02314 nth; endonuclease III-related protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BMULJ_00129 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BMULJ_02129 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E BMULJ_02100 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BMULJ_01995 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BMULJ_03689 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BMULJ_05956 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BMULJ_02723 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BMULJ_02191 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BMULJ_01080 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BMULJ_01368 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BMULJ_03689 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BMULJ_01995 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BMULJ_03013 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BMULJ_03012 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BMULJ_02979 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BMULJ_00836 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BMULJ_01919 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BMULJ_02067 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E BMULJ_00617 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BMULJ_02508 exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BMULJ_03694 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BMULJ_02300 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BMULJ_00069 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BMULJ_02429 holC; DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E BMULJ_00507 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BMULJ_01861 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BMULJ_00847 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BMULJ_01207 dnaQ; DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BMULJ_01797 dnaX; DNA polymerase III gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BMULJ_01995 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BMULJ_01368 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BMULJ_05928 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E BMULJ_02721 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E BMULJ_00954 vsr; DNA mismatch endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BMULJ_01156 recB; exodeoxyribonuclease V beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E BMULJ_01155 recC; exodeoxyribonuclease V gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E BMULJ_01157 recD; exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BMULJ_02609 recA; recombination protein K03553 recA; recombination protein RecA
E BMULJ_00543 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E BMULJ_00542 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BMULJ_00544 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E BMULJ_03153 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BMULJ_01842 priB; primosomal replication protein N K02686 priB; primosomal replication protein N
D RecFOR pathway proteins
E BMULJ_02609 recA; recombination protein K03553 recA; recombination protein RecA
E BMULJ_02008 sms; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E BMULJ_00576 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BMULJ_05851 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BMULJ_02100 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BMULJ_01073 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E BMULJ_01795 recR; recombination protein K06187 recR; recombination protein RecR
E BMULJ_00597 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E BMULJ_00543 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E BMULJ_00542 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BMULJ_00544 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E BMULJ_03808 superfamily II helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BMULJ_06022 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku
E BMULJ_06021 putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BMULJ_00975 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BMULJ_00068 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BMULJ_05562 putative topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BMULJ_00004 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BMULJ_01389 recT; recombination protein K07455 recT; recombination protein RecT
F BMULJ_02100 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BMULJ_01073 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F BMULJ_01795 recR; recombination protein K06187 recR; recombination protein RecR
F BMULJ_01995 ligA; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F BMULJ_00546 fis; factor for inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F BMULJ_01467 himA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
F BMULJ_00983 himD; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F BMULJ_03011 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BMULJ_03921 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BMULJ_05956 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BMULJ_02723 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BMULJ_02191 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F BMULJ_05483 putative histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_05753 putative histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_05814 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_05855 putative histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_06240 DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_03106 putative histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_03074 putative histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_04712 putative histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
F BMULJ_05246 putative histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BMULJ_02126 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D BMULJ_02609 recA; recombination protein K03553 recA; recombination protein RecA
D BMULJ_01605 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D BMULJ_00597 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D BMULJ_03262 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D BMULJ_02781 conserved hypothetical protein K14160 imuA; protein ImuA
D BMULJ_06292 conserved hypothetical protein K14160 imuA; protein ImuA
D BMULJ_02780 nucleotidyltransferase/DNA polymerase K14161 imuB; protein ImuB
D BMULJ_06293 nucleotidyltransferase/DNA polymerase K14161 imuB; protein ImuB
D BMULJ_06294 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BMULJ_02779 dnaE; DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D BMULJ_05928 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BMULJ_02721 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D BMULJ_02608 recX; regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D BMULJ_04049 putative family X DNA polymerase IV K02347 polX; DNA polymerase (family X)
D BMULJ_04121 dpx; family X DNA polymerase K02347 polX; DNA polymerase (family X)
C DNA helicases
D BMULJ_03119 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D BMULJ_01763 dinG; ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BMULJ_04092 lhr; ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D BMULJ_00414 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_01667 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_04405 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_01956 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_05978 putative oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BMULJ_02480 dut; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BMULJ_05649 nrdA; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BMULJ_00448 nrdA; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BMULJ_00449 nrdB; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024