+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Cytobacillus oceanisediminis</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      A361_08425 cysteine methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
C    BER (base exicision repair)
D      DNA glycosylases
E        A361_26300 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        A361_06445 3-methyladenine DNA glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        A361_06095 A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        A361_19270 endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
E        A361_11920 ATP-dependent helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      A361_04150 DNA mismatch repair protein MutT	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_24280 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_17125 NTP pyrophosphohydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_26975 DNA mismatch repair protein MutT	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_22795 nucleoside triphosphatase YtkD	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_01360 DNA mismatch repair protein MutT	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_03840 NUDIX domain-containing protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_11035 ADP-ribose pyrophosphatase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_29085 ADP-ribose pyrophosphatase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_17485 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_17590 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
#
A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      A361_08425 cysteine methyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      A361_04375 AraC family transcriptional regulator	K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] 
D      A361_26690 adenosine deaminase	K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] 
D      A361_04380 cysteine methyltransferase	K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
C    BER (base exicision repair)
D      DNA glycosylases
E        A361_26300 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        A361_12730 mismatch-specific DNA-glycosylase	K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] 
E        A361_05770 DNA-3-methyladenine glycosylase	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        A361_04370 DNA-3-methyladenine glycosylase	K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        A361_06445 3-methyladenine DNA glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        A361_06095 A/G-specific adenine glycosylase	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        A361_05245 formamidopyrimidine-DNA glycosylase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 
E        A361_22140 DNA-formamidopyrimidine glycosylase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 
E        A361_19270 endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        A361_13340 exodeoxyribonuclease III	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        A361_12690 endonuclease IV	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] 
E        A361_21005 deoxyribonuclease IV	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] 
D      RecJ
E        A361_21520 single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
D      DNA ligase
E        A361_01940 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
E        A361_22145 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        A361_24480 excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
E        A361_24485 excinuclease ABC subunit B	K03702 uvrB; excinuclease ABC subunit B 
E        A361_21960 excinuclease ABC subunit C	K03703 uvrC; excinuclease ABC subunit C 
E        A361_07695 ATP-dependent DNA helicase Rep	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_03880 helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_06500 DNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_01935 ATP-dependent DNA helicase PcrA	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_26840 DNA/RNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_22145 DNA polymerase I	K02335 polA; DNA polymerase I [EC:2.7.7.7] 
E        A361_01940 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          A361_00695 DNA-directed RNA polymerase subunit beta	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          A361_00700 DNA-directed RNA polymerase subunit beta'	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          A361_00875 DNA-directed RNA polymerase subunit alpha	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
F          A361_26125 DNA-directed RNA polymerase subunit delta	K03048 rpoE; DNA-directed RNA polymerase subunit delta 
F          A361_09400 DNA-directed RNA polymerase subunit omega	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          A361_00345 transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
E        A361_10220 DNA mismatch repair protein MutS	K03555 mutS; DNA mismatch repair protein MutS 
E        A361_22005 endonuclease MutS2	K07456 mutS2; DNA mismatch repair protein MutS2 
E        A361_16550 mannonate oxidoreductase	K07456 mutS2; DNA mismatch repair protein MutS2 
D      Molecular matchmaker
E        A361_10225 DNA mismatch repair protein MutL	K03572 mutL; DNA mismatch repair protein MutL 
D      Strand discrimination factor
D      DNA exonucleases
E        A361_20180 exodeoxyribonuclease VII large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
E        A361_20175 exodeoxyribonuclease VII small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] 
D      DNA polymerase III holoenzyme
E        A361_22240 dnaE; DNA polymerase III subunit alpha	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        A361_09895 polC; PolC-type DNA polymerase III	K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] 
E        A361_28510 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        A361_17385 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        A361_00010 DNA polymerase III subunit beta	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        A361_21235 DNA polymerase III subunit delta	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        A361_00220 DNA polymerase III subunit delta'	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        A361_05020 DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        A361_08065 DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        A361_25670 DNA polymerase III subunit epsilon	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        A361_00145 DNA polymerase III subunit gamma/tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      DNA ligase
E        A361_01940 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        A361_07695 ATP-dependent DNA helicase Rep	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_03880 helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_06500 DNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_01935 ATP-dependent DNA helicase PcrA	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_26840 DNA/RNA helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        A361_28730 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        A361_25615 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        A361_27080 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
E        A361_16335 very short patch repair endonuclease	K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        A361_21425 hypothetical protein	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        A361_10085 DNA recombination/repair protein RecA	K03553 recA; recombination protein RecA 
E        A361_21580 Holliday junction DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        A361_21575 Holliday junction DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        A361_09410 primosomal protein N'	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
E        A361_11730 ATP-dependent dsDNA exonuclease	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        A361_11725 exonuclease sbcCD subunit D	K03547 sbcD; DNA repair protein SbcD/Mre11 
D      RecFOR pathway proteins
E        A361_10085 DNA recombination/repair protein RecA	K03553 recA; recombination protein RecA 
E        A361_00595 DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms 
E        A361_00020 DNA replication/repair protein RecF	K03629 recF; DNA replication and repair protein RecF 
E        A361_09480 ATP-dependent DNA helicase RecG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        A361_21520 single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
E        A361_21085 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
E        A361_00155 recombination protein RecR	K06187 recR; recombination protein RecR 
E        A361_20150 DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        A361_19245 Holliday junction resolvase RecU	K03700 recU; recombination protein U 
E        A361_21580 Holliday junction DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        A361_21575 Holliday junction DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
D      AddAB pathway proteins
E        A361_07195 helicase-exonuclease AddAB subunit AddA	K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] 
E        A361_07190 helicase-exonuclease AddAB subunit AddB	K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] 
D      Other HR factor
D      Archaeal homologous recombinant proteins
E        A361_11730 ATP-dependent dsDNA exonuclease	K03546 sbcC; DNA repair protein SbcC/Rad50 
E        A361_11725 exonuclease sbcCD subunit D	K03547 sbcD; DNA repair protein SbcD/Mre11 
E        A361_20440 DEAD/DEAH box helicase	K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
E        A361_18410 Ku protein	K10979 ku; DNA end-binding protein Ku 
E        A361_18415 ATP-dependent DNA ligase	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] 
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          A361_00035 DNA gyrase subunit A	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          A361_00030 gyrB; DNA topoisomerase IV subunit B	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          A361_09645 DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
F          A361_19495 DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta 
F          A361_28445 DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta 
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          A361_07820 recombinase RecT	K07455 recT; recombination protein RecT 
F          A361_21520 single-stranded-DNA-specific exonuclease RecJ	K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] 
F          A361_21085 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
F          A361_00155 recombination protein RecR	K06187 recR; recombination protein RecR 
F          A361_01940 ligA; DNA ligase (NAD(+)) LigA	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
E        Supressor
F          A361_19660 ATP-dependent DNA helicase	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          A361_21910 ATP-dependent DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          A361_24480 excinuclease ABC subunit A	K03701 uvrA; excinuclease ABC subunit A 
F          A361_24485 excinuclease ABC subunit B	K03702 uvrB; excinuclease ABC subunit B 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      A361_20025 DNA polymerase IV	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      A361_19950 UV damage repair protein UvrX	K03502 umuC; DNA polymerase V 
C    Other SOS response factors
D      A361_10085 DNA recombination/repair protein RecA	K03553 recA; recombination protein RecA 
D      A361_10350 repressor LexA	K01356 lexA; repressor LexA [EC:3.4.21.88] 
D      A361_20150 DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      A361_28730 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      A361_25615 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      A361_27080 single-stranded DNA-binding protein	K03111 ssb; single-strand DNA-binding protein 
D      A361_06065 recombination regulator RecX	K03565 recX; regulatory protein 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
D      A361_22010 hypothetical protein	K02347 polX; DNA polymerase (family X) 
C    DNA helicases
D      A361_19145 ATP-dependent helicase	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
D      A361_19300 ATP-dependent DNA helicase DinG	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
C    Modulation of nucleotide pools
D      A361_04150 DNA mismatch repair protein MutT	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_24280 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_17125 NTP pyrophosphohydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_26975 DNA mismatch repair protein MutT	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_22795 nucleoside triphosphatase YtkD	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_01360 DNA mismatch repair protein MutT	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_03840 NUDIX domain-containing protein	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_11035 ADP-ribose pyrophosphatase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_29085 ADP-ribose pyrophosphatase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_17485 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_17590 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      A361_18270 ribonucleotide-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      A361_20300 ribonucleotide-diphosphate reductase subunit alpha	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      A361_18265 ribonucleotide-diphosphate reductase subunit beta	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
C    Others
D      A361_22255 oligoribonuclease	K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] 
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#Last updated: March 29, 2024