+E Ribosome biogenesis KO
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Ribosome Biogenesis - Bradyrhizobium sp. BF49
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D BF49_6516 Ribonuclease III EC 31263 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C BF49_6517 GTPbinding protein Era K03595 era; GTPase
C BF49_0433 GTPbinding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BF49_5809 C4type zinc finger protein DksATraR family K06204 dksA; RNA polymerase-binding transcription factor
C BF49_0044 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C BF49_0049 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C BF49_0053 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C BF49_7366 Transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C BF49_6549 Transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
C BF49_3600 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
C BF49_6212 Transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BF49_0968 SSU rRNA adenine1518N6adenine1519N6 dimethyltransferase EC 211182 K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BF49_0263 16S rRNA m5C 967 methyltransferase EC 211 K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BF49_1072 Sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D BF49_3027 16S rRNA guanine966N2methyltransferase EC 211171 K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D BF49_3054 Ribosomal RNA small subunit methyltransferase E EC 211 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BF49_0215 rRNA small subunit 7methylguanosine m7G methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BF49_5045 rRNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BF49_0172 rRNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D BF49_2078 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BF49_6148 23S rRNA guanosine2O methyltransferase rlmB EC 211 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BF49_1083 Heat shock protein FtsJRrmJ Ribosomal RNA large subunit methyltransferase E EC 211 K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D BF49_0426 LSU m3Psi1915 methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D BF49_3004 Protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D BF49_0320 Ribosomal RNA large subunit methyltransferase N EC 211 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BF49_0327 Ribosomal RNA large subunit methyltransferase N EC 211 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D BF49_2078 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BF49_2079 23S rRNA Uracil5 methyltransferase RumA EC 211 K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D BF49_0383 putative RNA pseudouridine synthase Uracil hydrolyase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D BF49_3028 tRNA pseudouridine synthase A EC 42170 K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BF49_6267 Ribosomal large subunit pseudouridine synthase C EC 42170 K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D BF49_2843 Ribosomal large subunit pseudouridine synthase D EC 42170 K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C BF49_0028 RibosomalproteinS18palanine acetyltransferase EC 231 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BF49_7353 RibosomalproteinS18palanine acetyltransferase EC 231 K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C BF49_4020 RibosomalproteinS5palanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C BF49_0373 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C BF49_6919 Ribosomal protein S12p Asp88 E coli methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C BF49_5070 Ribosomal protein L11 methyltransferase EC 211 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C BF49_3011 ProteinN5glutamine methyltransferase PrmB methylates LSU ribosomal protein L3p K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
B rRNA processing factors
C BF49_6516 Ribonuclease III EC 31263 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C BF49_0743 Cytoplasmic axial filament protein CafA and Ribonuclease G EC 314 K08300 rne; ribonuclease E [EC:3.1.26.12]
C BF49_6485 Putative Holliday junction resolvase YggF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C BF49_6092 ATPdependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C BF49_6517 GTPbinding protein Era K03595 era; GTPase
C BF49_1014 GTPbinding protein EngA K03977 engA; GTPase
C BF49_0433 GTPbinding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C BF49_7016 GTPbinding protein HflX K03665 hflX; GTPase
B Other maturation factors
C BF49_2216 TsaC protein YrdCSua5 domains required for threonylcarbamoyladenosine t6A37 modification in tRNA K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C BF49_6511 GTP pyrophosphokinase EC 2765 pppGpp synthetase II Guanosine35bisdiphosphate 3pyrophosphohydrolase EC 3172 K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C BF49_0056 Ribosomebinding factor A K02834 rbfA; ribosome-binding factor A
C BF49_7369 Ribosomebinding factor A K02834 rbfA; ribosome-binding factor A
C BF49_7374 Ribosomebinding factor A K02834 rbfA; ribosome-binding factor A
C BF49_7377 Ribosomebinding factor A K02834 rbfA; ribosome-binding factor A
C BF49_0043 FIG000325 clustered with transcription termination protein NusA K09748 rimP; ribosome maturation factor RimP
C BF49_0048 FIG000325 clustered with transcription termination protein NusA K09748 rimP; ribosome maturation factor RimP
C BF49_0052 FIG000325 clustered with transcription termination protein NusA K09748 rimP; ribosome maturation factor RimP
C BF49_7365 FIG000325 clustered with transcription termination protein NusA K09748 rimP; ribosome maturation factor RimP
C BF49_0427 Iojap protein K09710 ybeB; ribosome-associated protein
C BF49_0033 Metaldependent hydrolase YbeY involved in rRNA andor ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor
C BF49_0036 Metaldependent hydrolase YbeY involved in rRNA andor ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor
C BF49_7358 Metaldependent hydrolase YbeY involved in rRNA andor ribosome maturation and assembly K07042 ybeY; probable rRNA maturation factor
C BF49_0117 Ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C BF49_2973 GTPbinding and nucleic acidbinding protein YchF K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024