+F	Repair protein	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; DNA Repair and Recombination Proteins - Catenulispora acidiphila</h2>
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A<b>Eukaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      Caci_7757 methylated-DNA/protein-cysteinemethyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      Caci_5547 methylated-DNA/protein-cysteinemethyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      Caci_4449 methylated-DNA/protein-cysteinemethyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      Caci_4270 Deoxyribodipyrimidine photo-lyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        Caci_5297 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Caci_5463 DNA-3-methyladenine glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        Caci_8366 HhH-GPD family protein	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        Caci_8862 endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
D      Long Patch-BER factors
E        DNA polymerase delta complex
E        DNA polymerase epsilon complex
D      Short Patch-BER factors
D      Other BER factors
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        XPC-HR23B-CETN2 complex
E        Cul4-DDB2 complex
E        NER4 complex
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase II complex
E        Cul4-CSA complex
E        Other TCR factor
D      TFIIH complex
E        Caci_8107 helicase domain protein	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
D      RPA (replication factor A)
D      Other NER factors
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      MutL homologs
D      DNA polymerase delta complex
D      RPA (replication factor A)
D      RFC (replication factor C)
D      Other MMR factors
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      MRN(MRX) complex
D      BRCA1-core complex
D      BRCA1-A complex
D      BRCA1-B complex
D      BRCA1-C complex
D      BRCA complex
D      RecA family proteins
D      Rad52 family proteins
D      Rad54 family proteins
D      RecQ family DNA helicases
D      Bloom's syndrome complex (BTR)
D      RPA (replication factor A)
D      Protein phosphatase 4
D      AP-5 complex
D      SMC5-SMC6 complex
D      Other HR factors
C    NHEJ (non-homologous end-joining)
D      DNA-PK complex
D      MRX complex
D      DNA Ligase 4 complex
D      X-family DNA polymerases
D      Other NHEJ factors
C    FA (Fanconi anemia) pathway
D      FA core complex
D      FA core complex binding factors
D      Bloom's syndrome complex (BTR)
D      FANCD2-I complex
D      Downstream FA components
D      Other FA pathway factors
C    Other DSBR factors
D      Protein phosphatase 6
D      Ubiquitin ligases
D      Others
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
C    B-family DNA polymerases
C    A-family DNA polymerase
C    Rad6 epistasis group
C    Other TLS factors
B  Check point factors
C    Rad9-Hus1-Rad1 complex
C    HRAD17(Rad24)-RFC complex
C    Rad17-Mec3-Ddc1 complex
C    FPC (fork protection complex)
C    Triple T complex
C    BAG6-UBL4A-GET4 complex
C    Other check point factors
B  Other factors with a suspected DNA repair function
C    DNA polymerases
C    Nucleases
C    Helicases
C    PSO4 complex
C    Modulation of nucleotide pools
D      Caci_7395 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_1843 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_0742 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_2270 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_5556 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_4567 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_1637 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
#
A<b>Prokaryotic type</b>
B  SSBR (single strand breaks repair)
C    Direct repair
D      Caci_7757 methylated-DNA/protein-cysteinemethyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      Caci_5547 methylated-DNA/protein-cysteinemethyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      Caci_4449 methylated-DNA/protein-cysteinemethyltransferase	K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 
D      Caci_4270 Deoxyribodipyrimidine photo-lyase	K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 
C    BER (base exicision repair)
D      DNA glycosylases
E        Caci_5297 uracil-DNA glycosylase	K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Caci_4484 Uracil-DNA glycosylase superfamily	K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] 
E        Caci_8784 Uracil-DNA glycosylase superfamily	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Caci_5226 Uracil-DNA glycosylase superfamily	K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] 
E        Caci_7756 transcriptional regulator, AraC family	K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] 
E        Caci_5463 DNA-3-methyladenine glycosylase	K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] 
E        Caci_8366 HhH-GPD family protein	K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] 
E        Caci_2005 DNA-3-methyladenine glycosylase I	K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] 
E        Caci_4501 DNA-(apurinic or apyrimidinic site) lyase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 
E        Caci_8016 formamidopyrimidine-DNA glycosylase	K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] 
E        Caci_3415 DNA glycosylase/AP lyase, H2TH DNA-binding	K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] 
E        Caci_7304 DNA glycosylase/AP lyase, H2TH DNA-binding	K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] 
E        Caci_8862 endonuclease III	K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] 
D      AP endonucleases
E        Caci_5745 exodeoxyribonuclease III Xth	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        Caci_4608 exodeoxyribonuclease III Xth	K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] 
E        Caci_0339 apurinic endonuclease Apn1	K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] 
E        Caci_2231 Deoxyribonuclease V	K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] 
D      RecJ
D      DNA ligase
E        Caci_1313 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      DNA polymerase I
C    NER (nucleotide excision repair)
D      GGR (global genome repair) factors
E        Caci_5616 excinuclease ABC, A subunit	K03701 uvrA; excinuclease ABC subunit A 
E        Caci_6072 ABC transporter related	K03701 uvrA; excinuclease ABC subunit A 
E        Caci_5652 excinuclease ABC, B subunit	K03702 uvrB; excinuclease ABC subunit B 
E        Caci_5613 excinuclease ABC, C subunit	K03703 uvrC; excinuclease ABC subunit C 
E        Caci_7996 ATP-dependent DNA helicase PcrA	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Caci_7799 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Caci_7807 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Caci_1313 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      TCR (transcription coupled repair) factors
E        DNA-directed RNA polymerase complex (RNAP)
F          Caci_0917 DNA-directed RNA polymerase, beta subunit	K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 
F          Caci_0918 DNA-directed RNA polymerase, beta' subunit	K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] 
F          Caci_0964 DNA-directed RNA polymerase, alpha subunit	K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] 
F          Caci_5344 DNA-directed RNA polymerase, omega subunit	K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] 
E        TRCF (transcription-repair coupling factor)
F          Caci_0188 transcription-repair coupling factor	K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] 
C    MMR (mismatch excision repair)
D      Mismatch and loop recognition factors
D      Molecular matchmaker
D      Strand discrimination factor
D      DNA exonucleases
E        Caci_8274 exodeoxyribonuclease VII, large subunit	K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] 
E        Caci_8276 exodeoxyribonuclease VII, small subunit	K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] 
D      DNA polymerase III holoenzyme
E        Caci_7110 DNA polymerase III, alpha subunit	K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] 
E        Caci_0002 DNA polymerase III, beta subunit	K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] 
E        Caci_7073 DNA polymerase III, delta subunit	K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] 
E        Caci_8400 DNA-directed DNA polymerase	K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] 
E        Caci_0866 Exonuclease RNase T and DNA polymerase III	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        Caci_1509 Exonuclease RNase T and DNA polymerase III	K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] 
E        Caci_9029 DNA polymerase III, subunits gamma and tau	K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] 
D      DNA ligase
E        Caci_1313 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
D      Other MMR factors
E        Caci_7996 ATP-dependent DNA helicase PcrA	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Caci_7799 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Caci_7807 UvrD/REP helicase	K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] 
E        Caci_0336 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
E        Caci_7361 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
E        Caci_3020 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
E        Caci_9002 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
E        Caci_3043 D12 class N6 adenine-specific DNA methyltransferase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
E        Caci_7315 D12 class N6 adenine-specific DNA methyltransferase	K06223 dam; DNA adenine methylase [EC:2.1.1.72] 
E        Caci_1415 DNA mismatch endonuclease Vsr	K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] 
E        Caci_8537 DNA mismatch endonuclease Vsr	K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] 
B  DSBR (double strand breaks repair)
C    HR (homologous recombination)
D      RecBC pathway proteins
E        Caci_6026 helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        Caci_8706 helicase, RecD/TraA family	K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] 
E        Caci_1581 recA protein	K03553 recA; recombination protein RecA 
E        Caci_2353 Holliday junction DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        Caci_2354 Holliday junction DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        Caci_2352 crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
E        Caci_3038 endodeoxyribonuclease RusA	K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] 
E        Caci_3097 Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein	K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] 
D      RecFOR pathway proteins
E        Caci_1581 recA protein	K03553 recA; recombination protein RecA 
E        Caci_8361 DNA repair protein RadA	K04485 radA; DNA repair protein RadA/Sms 
E        Caci_0004 DNA replication and repair protein RecF	K03629 recF; DNA replication and repair protein RecF 
E        Caci_8025 ATP-dependent DNA helicase RecG	K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] 
E        Caci_7039 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
E        Caci_9027 recombination protein RecR	K06187 recR; recombination protein RecR 
E        Caci_5429 DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
E        Caci_2353 Holliday junction DNA helicase RuvA	K03550 ruvA; holliday junction DNA helicase RuvA 
E        Caci_2354 Holliday junction DNA helicase RuvB	K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] 
E        Caci_2352 crossover junction endodeoxyribonuclease RuvC	K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] 
D      AddAB pathway proteins
D      Other HR factor
E        Caci_3904 CRISPR-associated protein Cas1	K15342 cas1; CRISP-associated protein Cas1 
D      Archaeal homologous recombinant proteins
E        Caci_2056 protein of unknown function DUF853 NPT hydrolase putative	K06915 herA; DNA double-strand break repair helicase HerA and related ATPase 
C    NHEJ (non-homologous end-joining)
D      Two-component NHEJ DNA repair complex
E        Caci_5247 Ku protein	K10979 ku; DNA end-binding protein Ku 
E        Caci_2952 Ku protein	K10979 ku; DNA end-binding protein Ku 
E        Caci_5248 DNA polymerase LigD, ligase domain protein	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] 
E        Caci_5249 DNA polymerase LigD, polymerase domain protein	K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] 
D      SHIIR (short-homology-independent illegitimate recombination)
E        Facilitator
F          Caci_1772 DNA topoisomerase (ATP-hydrolyzing)	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          Caci_0007 DNA gyrase, A subunit	K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] 
F          Caci_1763 DNA topoisomerase (ATP-hydrolyzing)	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          Caci_0006 DNA gyrase, B subunit	K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] 
F          Caci_8444 DNA topoisomerase I	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
F          Caci_6633 conserved hypothetical protein	K03168 topA; DNA topoisomerase I [EC:5.6.2.1] 
E        Supressor
F          Caci_4973 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta 
F          Caci_8047 histone family protein DNA-binding protein	K03530 hupB; DNA-binding protein HU-beta 
D      SHDIR (short-homology-dependent illegitimate recombination)
E        RecET pathway
F          Caci_3047 RecT protein	K07455 recT; recombination protein RecT 
F          Caci_7039 DNA repair protein RecO	K03584 recO; DNA repair protein RecO (recombination protein O) 
F          Caci_9027 recombination protein RecR	K06187 recR; recombination protein RecR 
F          Caci_1313 DNA ligase, NAD-dependent	K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] 
E        Facilitator
E        Supressor
F          Caci_0697 ATP-dependent DNA helicase RecQ	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          Caci_5584 ATP-dependent DNA helicase, RecQ family	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
F          Caci_5616 excinuclease ABC, A subunit	K03701 uvrA; excinuclease ABC subunit A 
F          Caci_6072 ABC transporter related	K03701 uvrA; excinuclease ABC subunit A 
F          Caci_5652 excinuclease ABC, B subunit	K03702 uvrB; excinuclease ABC subunit B 
B  TLS (translesion DNA synthesis) factors
C    Y-family DNA polymerases
D      Caci_5822 DNA-directed DNA polymerase	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
D      Caci_1646 DNA-directed DNA polymerase	K02346 dinB; DNA polymerase IV [EC:2.7.7.7] 
C    Other SOS response factors
D      Caci_1581 recA protein	K03553 recA; recombination protein RecA 
D      Caci_1814 SOS-response transcriptional repressor, LexA	K01356 lexA; repressor LexA [EC:3.4.21.88] 
D      Caci_5429 DNA repair protein RecN	K03631 recN; DNA repair protein RecN (Recombination protein N) 
D      Caci_5241 conserved hypothetical protein	K14161 imuB; protein ImuB 
D      Caci_5240 DNA polymerase III, alpha subunit	K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] 
D      Caci_0336 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
D      Caci_7361 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
D      Caci_3020 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
D      Caci_9002 single-strand binding protein	K03111 ssb; single-strand DNA-binding protein 
D      Caci_1582 regulatory protein RecX	K03565 recX; regulatory protein 
B  Other factors with a suspected DNA repair function
C    DNA polymerase
D      Caci_4412 PHP domain protein	K02347 polX; DNA polymerase (family X) 
C    DNA helicases
D      Caci_1812 helicase c2	K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] 
D      Caci_1578 DEAD/H associated domain protein	K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] 
C    Modulation of nucleotide pools
D      Caci_7395 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_1843 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_0742 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_2270 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_5556 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_4567 NUDIX hydrolase	K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] 
D      Caci_8260 NUDIX hydrolase	K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] 
D      Caci_5410 NUDIX hydrolase	K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] 
D      Caci_6699 NUDIX hydrolase	K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] 
D      Caci_1637 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut	K01520 dut; dUTP diphosphatase [EC:3.6.1.23] 
D      Caci_1817 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      Caci_2042 ribonucleoside-diphosphate reductase, alpha subunit	K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] 
D      Caci_2041 Ribonucleoside-diphosphate reductase	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
D      Caci_0537 hypothetical protein	K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] 
C    Others
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#Last updated: March 29, 2024