+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Colletotrichum fioriniae</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        CFIO01_11603 RNA polymerase Rpb1	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        CFIO01_11396 DNA-directed RNA polymerase II subunit RPB2	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        CFIO01_12874 RNA polymerase Rpb3/RpoA insert domain-containing protein	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
D      Pol II specific subunits
E        CFIO01_07305 RNA polymerase Rpb4	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        CFIO01_02214 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        CFIO01_05269 RNA polymerase M/15 kDa subunit	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        CFIO01_13737 RNA polymerase Rpb5 domain-containing protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        CFIO01_03355 RNA polymerase Rpb6	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        CFIO01_00507 RNA polymerase Rpb8	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CFIO01_00358 DNA directed RNA polymerase	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        CFIO01_07642 RNA polymerase N/8 kDa subunit	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        CFIO01_07631 transcription factor IIA	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        CFIO01_10362 transcription initiation factor IIA	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
D      TFIID
E        CFIO01_08112 transcription factor TFIID	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CFIO01_10843 transcription initiation factor TFIID subunit 1	K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48] 
E        CFIO01_01633 hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        CFIO01_11112 bromodomain associated domain-containing protein	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        CFIO01_09902 WD domain-containing protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        CFIO01_06485 TATA box binding protein associated factor	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        CFIO01_02203 hypothetical protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        CFIO01_07050 hypothetical protein	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        CFIO01_08372 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        CFIO01_03422 transcription initiation factor TFIID 23-30kDa subunit	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        CFIO01_05236 hypothetical protein	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        CFIO01_05846 transcription initiation factor TFIID subunit A	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        CFIO01_04517 transcription initiation factor IID	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        CFIO01_07207 YEATS family protein	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
D      TFIIE
E        CFIO01_13045 TFIIE alpha subunit	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        CFIO01_13276 transcription initiation factor IIE subunit beta	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        CFIO01_09060 transcription initiation factor IIF subunit alpha	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        CFIO01_01424 transcription initiation factor IIF	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        CFIO01_10810 TFIIH p62 subunit domain-containing protein	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        CFIO01_12663 hypothetical protein	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        CFIO01_04561 transcription factor tfb4	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        CFIO01_02253 transcription factor tfb2	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        CFIO01_10048 DNA repair helicase rad25	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        CFIO01_11638 DNA repair helicase	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        CFIO01_08911 RNA polymerase II transcription factor B subunit 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        CFIO01_10421 hypothetical protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        CFIO01_09946 CDK-activating kinase assembly factor MAT1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        CFIO01_09347 cyclin ccl1	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        CFIO01_09072 MED6 mediator sub complex component	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        CFIO01_12795 RNA polymerase II mediator complex component Med8	K15130 MED8; mediator of RNA polymerase II transcription subunit 8, fungi type 
E        CFIO01_13153 RNA polymerase II mediator complex component SRB4	K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type 
E        CFIO01_10035 hypothetical protein	K15136 SRB5; mediator of RNA polymerase II transcription subunit 18, fungi type 
D      Middle
E        CFIO01_06932 mediator complex subunit Med5	K15147 MED5; mediator of RNA polymerase II transcription subunit 5 
E        CFIO01_10522 hypothetical protein	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        CFIO01_03357 transcription factor subunit Med10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        CFIO01_08468 RNA polymerase II transcription mediator	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        CFIO01_02885 RNA polymerase II transcription subunit 31 mediator	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        CFIO01_12016 mediator complex subunit MED14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        CFIO01_11098 RNA polymerase II Mediator complex subunit Sin4	K15160 SIN4; mediator of RNA polymerase II transcription subunit 16, fungi type 
D      CDK-module
E        CFIO01_11676 hypothetical protein	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        CFIO01_00685 RNA polymerase II holoenzyme cyclin-like subunit	K15161 CCNC; cyclin-C 
E        CFIO01_07357 transcription mediator subunit Med12	K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type 
E        CFIO01_06333 hypothetical protein	K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type 
D      Other mediators
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        CFIO01_01586 hypothetical protein	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        CFIO01_02497 FAT domain-containing protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        CFIO01_05379 spt3	K11313 SUPT3H; transcription initiation protein SPT3 
E        CFIO01_02161 spt3	K11313 SUPT3H; transcription initiation protein SPT3 
E        CFIO01_04203 hypothetical protein	K11359 SPT7; transcriptional activator SPT7 
E        CFIO01_13336 transcription factor SPT8	K11360 SPT8; transcriptional activator SPT8 
E        CFIO01_13162 hypothetical protein	K11362 HFI1; transcriptional coactivator HFI1/ADA1 
E        CFIO01_00021 hypothetical protein	K11314 TADA2A; transcriptional adapter 2-alpha 
E        CFIO01_08356 histone acetyltransferase subunit 3	K11315 TADA3; transcriptional adapter 3 
E        CFIO01_01633 hypothetical protein	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        CFIO01_09902 WD domain-containing protein	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        CFIO01_06485 TATA box binding protein associated factor	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        CFIO01_02203 hypothetical protein	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        CFIO01_08372 transcription initiation factor TFIID subunit 9	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        CFIO01_03422 transcription initiation factor TFIID 23-30kDa subunit	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        CFIO01_05846 transcription initiation factor TFIID subunit A	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        CFIO01_13539 SAGA-associated factor 29	K11364 SGF29; SAGA-associated factor 29 
E        CFIO01_11210 hypothetical protein	K11365 SGF73; SAGA-associated factor 73 
E        CFIO01_11096 SNF2 super family protein	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        CFIO01_04049 ubiquitin carboxyl-terminal hydrolase	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        CFIO01_11472 pre-mRNA-splicing factor rse-1	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        CFIO01_10223 snf5/smarcb1/ini1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        CFIO01_12736 SWIRM domain-containing protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        CFIO01_07446 SWIB/MDM2 domain-containing protein	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
D      SWI/SNF complex
E        CFIO01_08658 arid/bright DNA binding domain-containing protein	K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1 
E        CFIO01_05701 SNF2 family domain-containing protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
E        CFIO01_10223 snf5/smarcb1/ini1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        CFIO01_08484 hypothetical protein	K11768 ARP9; actin-related protein 9 
E        CFIO01_07207 YEATS family protein	K03140 TAF14; transcription initiation factor TFIID/TFIIF subunit 
D      RSC complex
E        CFIO01_04063 chromatin structure-remodeling complex protein RSC2	K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2 
E        CFIO01_00195 chromatin remodelling complex subunit	K11761 NPL6; chromatin structure-remodeling complex protein RSC7 
E        CFIO01_10250 arid/bright DNA binding domain-containing protein	K11763 RSC9; chromatin structure-remodeling complex subunit RSC9 
E        CFIO01_08484 hypothetical protein	K11768 ARP9; actin-related protein 9 
E        CFIO01_00217 snf5/smarcb1/ini1	K11770 SFH1; chromatin structure-remodeling complex subunit SFH1 
E        CFIO01_05701 SNF2 family domain-containing protein	K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-] 
D      Others
E        CFIO01_09840 transcriptional Coactivator p15	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
C    Other transcription-related factors
D      Transcription elongation factors
E        CFIO01_13182 transcription elongation factor S-II	K03145 TFIIS; transcription elongation factor S-II 
E        CFIO01_07580 transcription elongation factor spt-4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        CFIO01_09589 hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
E        CFIO01_05533 SH2 domain-containing protein	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        CFIO01_06598 hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        CFIO01_11613 CPSF A subunit region	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        CFIO01_04261 metallo-beta-lactamase superfamily protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CFIO01_09951 hypothetical protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        CFIO01_10687 calcineurin-like phosphoesterase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CFIO01_11543 calcineurin-like phosphoesterase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CFIO01_02009 mRNA cleavage and polyadenylation specificity factor complex subunit	K06100 SYMPK; symplekin 
E        CFIO01_10989 RNA polymerase II subunit A domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        CFIO01_12490 XRN 5'-3' exonuclease	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        CFIO01_02455 hypothetical protein	K14845 RAI1; RAT1-interacting protein 
E        CFIO01_09447 hypothetical protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        CFIO01_13522 RNA recognition domain-containing protein	K15560 NRD1; protein NRD1 
E        CFIO01_12777 helicase sen1	K10706 SETX; senataxin [EC:5.6.2.-] 
E        CFIO01_05270 peptidyl-prolyl cis-trans isomerase ssp-1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        CFIO01_10039 hypothetical protein	K15174 PAF1; RNA polymerase II-associated factor 1 
E        CFIO01_05388 Cdc73 family RNA pol II accessory factor	K15175 CDC73; parafibromin 
E        CFIO01_10280 tetratricopeptide	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        CFIO01_10232 hypothetical protein	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        CFIO01_04474 plus-3 domain-containing protein	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
D      Super elongation complex (SEC)
E        CFIO01_07647 hypothetical protein	K15183 ELL; RNA polymerase II elongation factor ELL 
D      Little elongation complex (LEC)
E        CFIO01_07647 hypothetical protein	K15183 ELL; RNA polymerase II elongation factor ELL 
D      Brd4/P-TEFb complex
D      BUR kinase complex
E        CFIO01_07563 hypothetical protein	K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23] 
E        CFIO01_08615 cyclin-K	K15563 BUR2; protein BUR2 
D      CTDK-I complex
E        CFIO01_08926 hypothetical protein	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        CFIO01_09006 C-type cyclin	K15564 CTK2; CTD kinase subunit beta 
E        CFIO01_10590 CTD kinase subunit gamma	K15565 CTK3; CTD kinase subunit gamma 
D      7SK RNP complex
D      DBIRD complex
D      Others
E        CFIO01_05680 SNF2 family domain-containing protein	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        CFIO01_09794 TATA-binding protein-associated phosphoprotein	K21751 DR1; down-regulator of transcription 1 
E        CFIO01_10275 histone-like transcription factor and archaeal histone	K21752 DRAP1; Dr1-associated corepressor 
E        CFIO01_11767 hypothetical protein	K15193 SPTY2D1; protein SPT2 
E        CFIO01_01733 FCP1-like phosphatase	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        CFIO01_01606 NLI interacting factor-like phosphatase	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        CFIO01_05102 hypothetical protein	K17498 SPN1; transcription factor SPN1 
E        CFIO01_04195 hypothetical protein	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        CFIO01_12573 Rtr1/RPAP2 family protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        CFIO01_13102 WD domain-containing protein	K06666 TUP1; general transcriptional corepressor TUP1 
E        CFIO01_07213 tetratricopeptide	K06665 SSN6; general transcriptional corepressor CYC8 
E        CFIO01_12657 SRF-type transcription factor	K12412 MCM1; pheromone receptor transcription factor 
E        CFIO01_12055 hypothetical protein	K24104 GPN; GPN-loop GTPase 
E        CFIO01_00357 hypothetical protein	K24104 GPN; GPN-loop GTPase 
E        CFIO01_10366 hypothetical protein	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        CFIO01_00429 RNA polymerase Rpb1	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        CFIO01_04534 DNA-directed RNA polymerase III subunit RPC2	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        CFIO01_04954 RNA polymerase Rpb3/RpoA insert domain-containing protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        CFIO01_11818 hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        CFIO01_10814 RNA polymerase III subunit RPC82	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        CFIO01_06937 RNA polymerase III RPC4	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        CFIO01_11308 DNA-directed RNA polymerase III complex subunit Rpc37	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        CFIO01_05351 RNA polymerase Rpc34 subunit	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        CFIO01_03947 hypothetical protein	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        CFIO01_11769 RNA polymerase III subunit Rpc25	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        CFIO01_05489 RNA polymerase III subunit C17	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        CFIO01_02884 transcription factor S-II	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        CFIO01_13737 RNA polymerase Rpb5 domain-containing protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        CFIO01_03355 RNA polymerase Rpb6	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        CFIO01_00507 RNA polymerase Rpb8	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CFIO01_00358 DNA directed RNA polymerase	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        CFIO01_07642 RNA polymerase N/8 kDa subunit	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        CFIO01_03354 hypothetical protein	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        CFIO01_08112 transcription factor TFIID	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        CFIO01_08417 Brf1-like TBP-binding domain-containing protein	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        CFIO01_09936 myb-like DNA-binding domain-containing protein	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        CFIO01_06986 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
D      TFIIIC, fungi type
E        CFIO01_06986 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        CFIO01_06164 hypothetical protein	K15205 TFC6; transcription factor C subunit 6 
E        CFIO01_09464 phosphoglycerate mutase	K15206 TFC7; transcription factor C subunit 7 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
D      Octamer transcription factors
D      Others
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        CFIO01_01416 DNA-directed RNA polymerase I subunit RPA2	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        CFIO01_04954 RNA polymerase Rpb3/RpoA insert domain-containing protein	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        CFIO01_11818 hypothetical protein	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        CFIO01_03122 A49-like RNA polymerase I associated factor	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        CFIO01_11672 RNA polymerase Rpb7-like domain-containing protein	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        CFIO01_03681 transcription factor S-II	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        CFIO01_13737 RNA polymerase Rpb5 domain-containing protein	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        CFIO01_03355 RNA polymerase Rpb6	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        CFIO01_00507 RNA polymerase Rpb8	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        CFIO01_00358 DNA directed RNA polymerase	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        CFIO01_07642 RNA polymerase N/8 kDa subunit	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        CFIO01_08112 transcription factor TFIID	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
C    Other transcription-related factors
D      UBF
D      Transcription initiation factors
E        CFIO01_03757 RNA polymerase I specific transcription initiation factor RRN3	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        CFIO01_08463 hypothetical protein	K15217 RRN5; RNA polymerase I-specific transcription initiation factor RRN5 
E        CFIO01_10820 hypothetical protein	K15218 RRN6; RNA polymerase I-specific transcription initiation factor RRN6 
E        CFIO01_12753 forms a complex with the other RRN protein RRN6 and RRN11	K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7 
E        CFIO01_10406 hypothetical protein	K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11 
E        CFIO01_10904 DEK C terminal domain-containing protein	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        CFIO01_07580 transcription elongation factor spt-4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        CFIO01_09589 hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        CFIO01_11504 SNF2 family domain-containing protein	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
E        CFIO01_08926 hypothetical protein	K00916 CTK1; CTD kinase subunit alpha [EC:2.7.11.22 2.7.11.23] 
E        CFIO01_09006 C-type cyclin	K15564 CTK2; CTD kinase subunit beta 
E        CFIO01_10590 CTD kinase subunit gamma	K15565 CTK3; CTD kinase subunit gamma 
D      Transcription termination factors
D      Others
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
D      TFE
E        CFIO01_13045 TFIIE alpha subunit	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#Last updated: April 9, 2024