+F Repair protein KO #

  DNA Repair and Recombination Proteins - Dehalobacter sp. DCA

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D DHBDCA_p2595 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E DHBDCA_p713 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DHBDCA_p677 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DHBDCA_p370 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E DHBDCA_p2799 DinG family ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D DHBDCA_p2464 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DHBDCA_p2472 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DHBDCA_p2059 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D DHBDCA_p2595 Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E DHBDCA_p713 Uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E DHBDCA_p677 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E DHBDCA_p916 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E DHBDCA_p370 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E DHBDCA_p2106 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E DHBDCA_p841 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E DHBDCA_p1408 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E DHBDCA_p2843 uvrA; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E DHBDCA_p2844 uvrB; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E DHBDCA_p385 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E DHBDCA_p1316 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DHBDCA_p1409 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DHBDCA_p2475 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DHBDCA_p1408 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F DHBDCA_p1895 rpoB; DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F DHBDCA_p1894 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F DHBDCA_p1861 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F DHBDCA_p1436 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F DHBDCA_p266 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E DHBDCA_p601 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E DHBDCA_p1944 mutS2; Recombination inhibitory protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E DHBDCA_p604 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E DHBDCA_p457 xseA; Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E DHBDCA_p458 xseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E DHBDCA_p930 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E DHBDCA_p2077 polC; DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E DHBDCA_p2 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E DHBDCA_p2573 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E DHBDCA_p211 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E DHBDCA_p203 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E DHBDCA_p1408 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E DHBDCA_p1316 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DHBDCA_p1409 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DHBDCA_p2475 Superfamily I DNA and RNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E DHBDCA_p2962 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E DHBDCA_p1290 Site-specific DNA methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E DHBDCA_p1395 hypothetical protein K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E DHBDCA_p315 recA; RecA protein K03553 recA; recombination protein RecA E DHBDCA_p855 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DHBDCA_p854 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DHBDCA_p856 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E DHBDCA_p2181 priA; primosomal protein N'' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E DHBDCA_p656 sbcC; Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E DHBDCA_p657 sbcD; Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E DHBDCA_p679 DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E DHBDCA_p315 recA; RecA protein K03553 recA; recombination protein RecA E DHBDCA_p1920 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E DHBDCA_p3 recF; DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E DHBDCA_p2158 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E DHBDCA_p841 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E DHBDCA_p2538 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E DHBDCA_p205 recR; Recombination protein RecR K06187 recR; recombination protein RecR E DHBDCA_p468 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E DHBDCA_p855 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E DHBDCA_p854 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E DHBDCA_p856 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E DHBDCA_p2219 ATP-dependent nuclease, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E DHBDCA_p2220 ATP-dependent nuclease, subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E DHBDCA_p2452 putative helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E DHBDCA_p656 sbcC; Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E DHBDCA_p657 sbcD; Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E DHBDCA_p679 DNA double-strand break repair protein Mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E DHBDCA_p2111 Ku domain protein K10979 ku; DNA end-binding protein Ku E DHBDCA_p2112 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E DHBDCA_p2113 ATP-dependent DNA ligase clustered with Ku protein, LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F DHBDCA_p6 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F DHBDCA_p5 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F DHBDCA_p2096 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F DHBDCA_p270 DNA-binding protein HBsu K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F DHBDCA_p841 Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F DHBDCA_p2538 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F DHBDCA_p205 recR; Recombination protein RecR K06187 recR; recombination protein RecR F DHBDCA_p1408 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F DHBDCA_p2233 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F DHBDCA_p2843 uvrA; Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F DHBDCA_p2844 uvrB; Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D DHBDCA_p2342 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D DHBDCA_p1164 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D DHBDCA_p315 recA; RecA protein K03553 recA; recombination protein RecA D DHBDCA_p613 lexA; SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DHBDCA_p2309 SOS-response repressor and protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D DHBDCA_p468 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D DHBDCA_p2962 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D DHBDCA_p2442 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D DHBDCA_p316 recX; regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D DHBDCA_p828 DinG family ATP-dependent helicase YoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D DHBDCA_p2464 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DHBDCA_p2472 mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D DHBDCA_p2059 Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D DHBDCA_p2725 hypothetical protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D DHBDCA_p2068 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024