+E Ribosome biogenesis KO
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Ribosome Biogenesis - Maridesulfovibrio hydrothermalis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D DESAM_21571 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C DESAM_20754 era; GTPase Era K03595 era; GTPase
C DESAM_20061 obg; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C DESAM_22708 dksA; DnaK suppressor protein homolog K06204 dksA; RNA polymerase-binding transcription factor
C DESAM_23178 Transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C DESAM_23080 Transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
C DESAM_21702 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
C DESAM_20253 nusB; N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
C DESAM_23008 nusG; transcription termination factor K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D DESAM_22018 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D DESAM_20570 NusB/RsmB/TIM44 K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D DESAM_22551 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D DESAM_22295 conserved protein of unknown function K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D DESAM_21221 Fmu (Sun) domain protein K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D DESAM_20833 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D DESAM_20202 mraW; S-adenosyl-dependent methyltransferase active on membrane-located substrates K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D DESAM_20499 yraL; putative methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D DESAM_22219 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D DESAM_20743 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D DESAM_23112 rlmE; Ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D DESAM_20835 rlmH; Ribosomal RNA large subunit methyltransferase H K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D DESAM_22417 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D DESAM_20626 rlmN; Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D DESAM_22219 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D DESAM_20196 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D DESAM_21208 rluA; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D DESAM_22369 RNA-binding S4 domain protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D DESAM_21226 Pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D DESAM_21807 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D DESAM_21916 Pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C DESAM_22318 Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C DESAM_20504 rimM; Ribosome maturation factor rimM K02860 rimM; 16S rRNA processing protein RimM
C DESAM_20342 rimO; Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C DESAM_22705 conserved protein of unknown function K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C DESAM_22753 conserved protein of unknown function K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
C DESAM_22039 prmA; Ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C DESAM_21571 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
C DESAM_20580 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
C DESAM_23056 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C DESAM_20085 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C DESAM_21104 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C DESAM_20754 era; GTPase Era K03595 era; GTPase
C DESAM_22516 rsgA; putative ribosome biogenesis GTPase RsgA 2 K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C DESAM_21724 der; GTPase Der K03977 engA; GTPase
C DESAM_20061 obg; GTPase involved in cell partioning and DNA repair K03979 obgE; GTPase [EC:3.6.5.-]
C DESAM_23022 hflX; GTPase HflX K03665 hflX; GTPase
B Other maturation factors
C DESAM_21646 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C DESAM_10193 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C DESAM_21698 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C DESAM_21703 rimP; Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP
C DESAM_22333 Iojap-like protein K09710 ybeB; ribosome-associated protein
C DESAM_22413 putative rRNA maturation factor K07042 ybeY; probable rRNA maturation factor
C DESAM_22961 conserved protein of unknown function K09889 yjgA; ribosome-associated protein
C DESAM_21976 Sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
C DESAM_21303 ychF; putative GTP-binding protein K06942 ychF; ribosome-binding ATPase
C DESAM_20238 conserved protein of unknown function K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024