+E Ribosome biogenesis KO
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Ribosome Biogenesis - Candidatus Babela massiliensis
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D BABL1_gene_402 orn; Oligoribonuclease (3'->5' exoribonuclease) K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C BABL1_gene_995 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C BABL1_gene_324 nusA; Transcription elongation factor nusA K02600 nusA; transcription termination/antitermination protein NusA
C BABL1_gene_137 nusB; Transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C BABL1_gene_474 nusG; Transcription antiterminator NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D BABL1_gene_107 rsmA; Dimethyladenosine transferase (rRNA methylation) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D BABL1_gene_408 rsmE; RNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D BABL1_gene_666 rsmG; Methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D BABL1_gene_744 rsmH; S-adenosylmethionine-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D BABL1_gene_751 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D BABL1_gene_394 rlmB; rRNA methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D BABL1_gene_751 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D BABL1_gene_211 rluB; 16S rRNA uridine-516 pseudouridylate synthase or related enzyme K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D BABL1_gene_371 rluD; Pseudouridylate synthase 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
B rRNA processing factors
C BABL1_gene_337 rng; Ribonuclease G and E K08301 rng; ribonuclease G [EC:3.1.26.-]
C BABL1_gene_411 yrrK; RNase H-like ribonuclease K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C BABL1_gene_22 cshA; Superfamily II DNA and RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C BABL1_gene_689 der; EngA GTPase involved in 50S ribosomal subunit maturation K03977 engA; GTPase
C BABL1_gene_487 hflX; GTP-binding protein protease modulator K03665 hflX; GTPase
B Other maturation factors
C BABL1_gene_643 Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C BABL1_gene_687 sigma-54 modulation protein/Ribosome-associated protein Y (PSrp-1) K05808 hpf; ribosome hibernation promoting factor
C BABL1_gene_801 ychF; Predicted GTPase probable translation factor K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024