+F Repair protein KO
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DNA Repair and Recombination Proteins - Enterobacter ludwigii EcWSU1
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D EcWSU1_01956 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D EcWSU1_01262 phrB; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E EcWSU1_03392 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E EcWSU1_03760 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E EcWSU1_01922 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D EcWSU1_00713 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D EcWSU1_00101 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D EcWSU1_01956 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D EcWSU1_03114 ada; Regulatory protein ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D EcWSU1_01262 phrB; Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D EcWSU1_03113 alkB; Alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E EcWSU1_03392 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E EcWSU1_03859 mug; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E EcWSU1_02993 alkA; DNA-3-methyladenine glycosylase 2 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E EcWSU1_03760 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E EcWSU1_00192 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E EcWSU1_00106 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E EcWSU1_01267 nei; Endonuclease 8 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E EcWSU1_01922 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E EcWSU1_01778 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E EcWSU1_03074 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E EcWSU1_00225 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E EcWSU1_03689 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E EcWSU1_03246 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E EcWSU1_00093 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E EcWSU1_04495 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E EcWSU1_00279 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E EcWSU1_01323 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E EcWSU1_02854 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E EcWSU1_01787 cho; Excinuclease cho K05984 cho; excinuclease Cho [EC:3.1.25.-]
E EcWSU1_04364 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E EcWSU1_04495 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E EcWSU1_03246 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E EcWSU1_00093 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F EcWSU1_00211 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F EcWSU1_00212 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F EcWSU1_04097 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F EcWSU1_00091 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F EcWSU1_01708 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E EcWSU1_03554 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E EcWSU1_00370 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
E EcWSU1_03631 mutH; DNA mismatch repair protein mutH K03573 mutH; DNA mismatch repair protein MutH
D DNA exonucleases
E EcWSU1_02941 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E EcWSU1_03321 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E EcWSU1_00945 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E EcWSU1_02771 exoX; Exodeoxyribonuclease 10 K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E EcWSU1_00796 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E EcWSU1_00002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E EcWSU1_04019 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E EcWSU1_01222 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E EcWSU1_01693 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E EcWSU1_00823 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E EcWSU1_01006 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
E EcWSU1_00583 holD; DNA polymerase III subunit psi K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D DNA ligase
E EcWSU1_03246 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E EcWSU1_00093 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E EcWSU1_04364 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E EcWSU1_00280 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E EcWSU1_04174 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E EcWSU1_02900 vsr; Very short patch repair protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E EcWSU1_03619 recB; Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E EcWSU1_03621 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E EcWSU1_03618 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E EcWSU1_03509 recA; RecA K03553 recA; recombination protein RecA
E EcWSU1_02786 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E EcWSU1_02785 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E EcWSU1_02787 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E EcWSU1_02330 rusA; Crossover junction endodeoxyribonuclease rusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
E EcWSU1_04426 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E EcWSU1_01003 priC; Primosomal replication protein N'' K04067 priC; primosomal replication protein N''
E EcWSU1_00569 dnaT; Primosomal protein 1 K02317 dnaT; DNA replication protein DnaT
E EcWSU1_02941 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E EcWSU1_00913 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E EcWSU1_00914 sbcD; Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E EcWSU1_03509 recA; RecA K03553 recA; recombination protein RecA
E EcWSU1_00609 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
E EcWSU1_00003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E EcWSU1_00088 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E EcWSU1_03689 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E EcWSU1_03378 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E EcWSU1_01009 recR; Recombination protein recR K06187 recR; recombination protein RecR
E EcWSU1_03426 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E EcWSU1_00911 rdgC; Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC
E EcWSU1_02786 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E EcWSU1_02785 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E EcWSU1_02787 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E EcWSU1_03097 yejH; YejH K19789 radD; DNA repair protein RadD
D Archaeal homologous recombinant proteins
E EcWSU1_00913 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E EcWSU1_00914 sbcD; Nuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
E EcWSU1_04024 yjgR; YjgR K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F EcWSU1_03121 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F EcWSU1_00004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F EcWSU1_02509 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F EcWSU1_00227 hupA; DNA-binding protein HU-alpha K05787 hupA; DNA-binding protein HU-alpha
F EcWSU1_00964 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F EcWSU1_03689 recJ; Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F EcWSU1_03378 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F EcWSU1_01009 recR; Recombination protein recR K06187 recR; recombination protein RecR
F EcWSU1_03246 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
F EcWSU1_00093 ligB; DNA ligase B K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F EcWSU1_04070 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F EcWSU1_01816 ihfA; Integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha
F EcWSU1_01497 ihfB; Integration host factor subunit beta K05788 ihfB; integration host factor subunit beta
E Supressor
F EcWSU1_02941 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F EcWSU1_04359 recQ; ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F EcWSU1_00279 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F EcWSU1_01323 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
F EcWSU1_02590 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D EcWSU1_00846 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D EcWSU1_02420 umuC; UmuC K03502 umuC; DNA polymerase V
D EcWSU1_01965 umuC; Protein umuC K03502 umuC; DNA polymerase V
D EcWSU1_02314 umuC; UmuC K03502 umuC; DNA polymerase V
D EcWSU1_A020 samB; SamB K03502 umuC; DNA polymerase V
D EcWSU1_02421 umuD; UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D EcWSU1_01964 umuD; Protein umuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D EcWSU1_02315 umuD; UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D EcWSU1_03509 recA; RecA K03553 recA; recombination protein RecA
D EcWSU1_00261 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D EcWSU1_03426 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D EcWSU1_00673 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D EcWSU1_00280 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D EcWSU1_01652 dinI; DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D EcWSU1_03508 recX; Regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D EcWSU1_04392 rep; ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D EcWSU1_01544 helD; Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D EcWSU1_01343 dinG; putative ATP-dependent helicase dinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D EcWSU1_02733 yoaA; putative ATP-dependent helicase yoaA K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D EcWSU1_00713 mutT; Mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D EcWSU1_00101 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D EcWSU1_03490 nrdE; Ribonucleoside-diphosphate reductase 2 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EcWSU1_03123 nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D EcWSU1_03124 nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D EcWSU1_03491 nrdF; Ribonucleoside-diphosphate reductase 2 subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024