+E Transcription factors KO
#
Transcription Factors - Escherichia coli W
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D ECW_m2136 dcm; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D ECW_m4234 mth1; DNA cytosine methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D ECW_m0062 araC; DNA-binding transcriptional dual regulator K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D ECW_m4706 hpaA; 4-hydroxyphenylacetate catabolism regulatory protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D ECW_m4215 rhaR; DNA-binding protein transcriptional activator, L-rhamnose-binding protein K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D ECW_m4214 rhaS; DNA-binding protein transcriptional activator, L-rhamnose-binding protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D ECW_m1904 chbR; DNA-binding transcriptional dual regulator K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D ECW_m4476 adiY; DNA-binding transcriptional activator K03755 adiY; AraC family transcriptional regulator, transcriptional activator of adiA
D ECW_m2665 eutR; predicted DNA-binding transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D ECW_m0608 envY; DNA-binding transcriptional activator of porin biosynthesis K11920 envY; AraC family transcriptional regulator
D ECW_m4427 soxS; DNA-binding transcriptional dual regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D ECW_m1660 marA; DNA-binding transcriptional dual activator of multiple antibiotic resistance K13632 marA; AraC family transcriptional regulator, mar-sox-rob regulon activator
D ECW_m4758 rob; DNA-binding transcriptional activator K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D ECW_m1518 feaR; DNA-binding transcriptional dual regulator K14063 feaR; AraC family transcriptional regulator, positive regulator of tynA and feaB
D ECW_m0380 ykgD; predicted DNA-binding transcriptional regulator K21746 rclR; AraC family transcriptional regulator, reactive chlorine species (RCS)-specific activator of rcl operon
D ECW_m3777 gadW; DNA-binding transcriptional activator K21906 gadW; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D ECW_m3779 gadX; DNA-binding transcriptional dual regulator K21905 gadX; AraC family transcriptional regulator, glutamate-dependent acid resistance regulator
D ECW_m4478 melR; DNA-binding transcriptional dual regulator K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D ECW_m1958 yeaM; predicted DNA-binding transcriptional regulator K25495 nimR; AraC family transcriptional regulator, regulator of nimT
D ECW_m2414 ada; fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D ECW_m3018 gcvA; DNA-binding transcriptional dual regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D ECW_m4072 ilvY; DNA-binding transcriptional dual regulator K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D ECW_m4130 metR; DNA-binding protein transcriptional activator, homocysteine-binding protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D ECW_m0019 nhaR; DNA-binding transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D ECW_m4318 oxyR; DNA-binding transcriptional dual regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D ECW_m3171 argP; DNA-binding transcriptional activator, replication initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D ECW_m0076 leuO; DNA-binding transcriptional activator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D ECW_m2763 hcaR; DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D ECW_m3387 tdcA; DNA-binding transcriptional activator K07592 tdcA; LysR family transcriptional regulator, tdc operon transcriptional activator
D ECW_m0576 allS; DNA-binding transcriptional activator of the AllD operon K10972 allS; LysR family transcriptional regulator, transcriptional activator of the allD operon
D ECW_m0416 cynR; DNA-binding transcriptional dual regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D ECW_m1367 cysB; DNA-binding protein transcriptional dual regulator, O-acetyl-L-serine-binding protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D ECW_m2159 cbl; DNA-binding transcriptional activator of cysteine biosynthesis K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D ECW_m1436 abgR; predicted DNA-binding transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D ECW_m1968 yeaT; predicted DNA-binding transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D ECW_m2160 nac; DNA-binding transcriptional dual regulator of nitrogen assimilation K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D ECW_m4685 yjiE; predicted DNA-binding transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D ECW_m3510 aaeR; predicted DNA-binding transcriptional regulator, efflux system K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D ECW_m3327 ttdR; predicted DNA-binding transcriptional regulator K21742 ttdR; LysR family transcriptional regulator, transcriptional activator for ttdABT operon
D ECW_m4063 hdfR; DNA-binding transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D ECW_m1426 ycjZ; predicted DNA-binding transcriptional regulator K24082 pgrR; LysR family transcriptional regulator, regulator of peptidoglycan recycling
C DeoR family
D ECW_m0898 deoR; DNA-binding transcriptional repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D ECW_m3680 glpR; DNA-binding transcriptional repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D ECW_m2291 gatR; galactitol utilization operon repressor K02436 gatR; DeoR family transcriptional regulator, galactitol utilization operon repressor
D ECW_m3399 agaR; DNA-binding transcriptional dual regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D ECW_m3015 fucR; DNA-binding transcriptional activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D ECW_m2906 srlR; DNA-bindng transcriptional repressor K02468 srlR; DeoR family transcriptional regulator, glucitol operon repressor
D ECW_m4553 ulaR; DNA-binding transcriptional dual regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D ECW_m4188 yihW; predicted DNA-binding transcriptional regulator K27243 csqR; DeoR family transcriptional regulator, sulfoquinovose operon repressor
C LacI family
D ECW_m0423 lacI; DNA-binding transcriptional repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D ECW_m2352 galS; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ECW_m3843 xylR; DNA-binding protein transcriptional activator, xylose-binding protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ECW_m3082 galR; DNA-binding transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D ECW_m4286 cytR; DNA-binding transcriptional dual regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D ECW_m0079 fruR; DNA-binding transcriptional dual regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D ECW_m4602 treR; DNA-binding transcriptional repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D ECW_m2913 ascG; DNA-binding transcriptional repressor K03487 ascG; LacI family transcriptional regulator, asc operon repressor
D ECW_m1825 purR; DNA-binding protein transcriptional repressor, hypoxanthine-binding protein K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D ECW_m3697 gntR; DNA-binding transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D ECW_m4624 idnR; DNA-binding protein transcriptional repressor, 5-gluconate-binding protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D ECW_m3342 ebgR; DNA-binding transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D ECW_m1786 malI; DNA-binding transcriptional repressor K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
C GntR family
D ECW_m1667 bcgR; putative transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D ECW_m3983 yidP; predicted DNA-binding transcriptional regulator K03482 yidP; GntR family transcriptional regulator, glv operon transcriptional regulator
D ECW_m4463 phnF; predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D ECW_m3630 frlR; predicted DNA-binding transcriptional regulator K10711 frlR; GntR family transcriptional regulator, frlABCD operon transcriptional regulator
D ECW_m0784 mngR; DNA-binding protein transcriptional dual regulator, fatty-acyl-binding protein K11922 mngR; GntR family transcriptional regulator, mannosyl-D-glycerate transport/metabolism system repressor
D ECW_m1272 fadR; fatty acid metabolism regulator K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D ECW_m0110 pdhR; DNA-binding transcriptional dual regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D ECW_m3247 glcC; DNA-binding protein transcriptional dual regulator, glycolate-binding protein K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D ECW_m4682 uxuR; DNA-binding transcriptional repressor K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D ECW_m3365 exuR; DNA-binding transcriptional repressor K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D ECW_m3883 lldR; DNA-binding transcriptional repressor K14348 lldR; GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator
D ECW_m3994 dgoR; predicted DNA-binding transcriptional regulator K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D ECW_m3493 nanR; DNA-binding transcriptional dual regulator K22104 nanR; GntR family transcriptional regulator, sialic acid-inducible nan operon repressor
D ECW_m1578 mcbR; predicted DNA-binding transcriptional regulator K13654 mcbR; GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator
D ECW_m2861 csiR; DNA-binding transcriptional dual regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D ECW_m1676 yfdH; predicted DNA-binding transcriptional regulator K22293 rspR; GntR family transcriptional regulator, rspAB operon transcriptional repressor
D ECW_m4717 yjjM; L-galactonate gene regulator K23015 lgoR; GntR family transcriptional regulator, transcriptional activator for L-galactonate catabolism
C TetR/AcrR family
D ECW_m0387 betI; DNA-binding transcriptional repressor K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D ECW_m0536 acrR; DNA-binding transcriptional repressor K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D ECW_m3917 slmA; division inhibitor K05501 slmA; TetR/AcrR family transcriptional regulator
D ECW_m1123 rutR; predicted DNA-binding transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D ECW_m1816 nemR; predicted DNA-binding transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D ECW_m1784 uidR; DNA-binding transcriptional repressor K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D ECW_m3530 acrR2; DNA-binding transcriptional regulator K18140 envR; TetR/AcrR family transcriptional regulator, acrEF/envCD operon repressor
D ECW_m4611 yjgJ; predicted transcriptional regulator K19335 bdcR; TetR/AcrR family transcriptional regulator, repressor for divergent bdcA
D ECW_m1219 ycfQ; predicted DNA-binding transcriptional regulator K22041 comR; TetR/AcrR family transcriptional regulator, copper-responsive repressor
D ECW_m4320 fabR; DNA-binding transcriptional repressor K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D ECW_m0852 ybiH; predicted DNA-binding transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D ECW_m0904 ybjK; predicted DNA-binding transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D ECW_m4046 asnC; DNA-binding transcriptional dual regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D ECW_m0999 lrp; DNA-binding protein transcriptional dual regulator, leucine-binding protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D ECW_m0519 ybaO; predicted DNA-binding transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D ECW_m2090 sdiA; DNA-binding transcriptional activator K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D ECW_m0371 ecpR; predicted regulator K21963 ecpR; LuxR family transcriptional regulator, Mat/Ecp fimbriae transcriptional regulator
D ECW_m2126 rcsA; DNA-binding transcriptional activator, co-regulator with RcsB K07781 rcsA; LuxR family transcriptional regulator, capsular biosynthesis positive transcription factor
D ECW_m1148 csgD; DNA-binding transcriptional activator in two-component regulatory system K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D ECW_m3768 dctR; predicted DNA-binding transcriptional regulator K21901 dctR; LuxR family transcriptional regulator, dicarboxylate transport regulator
D ECW_m4726 bglJ; DNA-binding transcriptional activator K22650 bglJ; LuxR family transcriptional regulator, regulator of transport and utilization of aryl beta-glucosides
D ECW_m3676 malT; fused conserved protein: DNA-binding transcriptional activator/maltotriose-ATP-binding protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D ECW_m3773 gadE; DNA-binding transcriptional activator K21907 gadE; LuxR family transcriptional regulator, glutamate-dependent acid resistance regulator
C MarR family
D ECW_m1659 marR; DNA-binding transcriptional repressor of multiple antibiotic resistance K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D ECW_m1810 slyA; DNA-binding transcriptional activator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D ECW_m2880 mprA; DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D ECW_m2946 hosA; putative Transcriptional regulator K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
C MerR family
D ECW_m0560 cueR; DNA-binding transcriptional activator of copper-responsive regulon genes K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D ECW_m3560 zntR; DNA-binding transcriptional activator in response to Zn(II) K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D ECW_m4428 soxR; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D ECW_m2328 mlrA; DNA-binding transcriptional regulator K21089 mlrA; MerR family transcriptional regulator, activator of the csg genes
D ECW_m1246 ycgE; predicted DNA-binding transcriptional regulator K21972 bluR; MerR family transcriptional regulator, repressor of blue light- and temperature-responsive genes
C Fur family
D ECW_m0735 fur; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D ECW_m4412 zur; DNA-binding protein transcriptional repressor, Zn(II)-binding protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D ECW_m4377 iclR; DNA-binding transcriptional repressor K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D ECW_m0424 mhpR; DNA-binding protein transcriptional activator, 3HPP-binding protein K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D ECW_m0578 allR; DNA-binding transcriptional repressor K10973 allR; IclR family transcriptional regulator, negative regulator of allantoin and glyoxylate utilization operons
D ECW_m1998 kdgR; predicted DNA-binding transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D ECW_m3848 yiaJ; predicted DNA-binding transcriptional repressor K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
C CRP/FNR family
D ECW_m3613 crp; DNA-binding transcriptional dual regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D ECW_m1431 fnr; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D ECW_m2364 yeiL; DNA-binding transcriptional activator of stationary phase nitrogen survival K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D ECW_m2757 iscR; DNA-binding transcriptional repressor K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D ECW_m4540 nsrR; predicted DNA-binding transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D ECW_m3761 arsR; DNA-binding transcriptional repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D ECW_m1562 ydcN; predicted DNA-binding transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
C Other families
D ECW_m0873 mntR; DNA-binding transcriptional regulator of mntH K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D ECW_m2655 yfeT; predicted DNA-binding transcriptional regulator K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D ECW_m2028 yebK; predicted DNA-binding transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D ECW_m4331 birA; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/DNA-binding protein transcriptional repressor, bio-5'-AMP-binding protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D ECW_m3527 fis; global DNA-binding transcriptional dual regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D ECW_m4755 trpR; DNA-binding protein transcriptional repressor, tryptophan-binding protein K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D ECW_m0409 prpR; DNA-binding transcriptional activator K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein
D ECW_m0318 ner; DNA binding protein K07724 ner; Ner family transcriptional regulator
D ECW_m3460 sfsB; DNA-binding transcriptional activator of maltose metabolism K07724 ner; Ner family transcriptional regulator
D ECW_m0068 sgrR; DNA-binding transcriptional regulator K11925 sgrR; SgrR family transcriptional regulator
D ECW_m4752 nadR; bifunctional DNA-binding transcriptional repressor/NMN adenylyltransferase K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D ECW_m1395 puuR; DNA-binding transcriptional repressor K14056 puuR; HTH-type transcriptional regulator, repressor for puuD
D ECW_m1637 hipB; DNA-binding transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D ECW_m1734 dicA; Qin prophage; predicted regulator for DicB K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D ECW_m1455 putative transcriptional regulator K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor
D ECW_m3349 ygjM; predicted DNA-binding transcriptional regulator K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D ECW_m2714 hyfR; DNA-binding transcriptional activator, formate sensing K12146 hyfR; hydrogenase-4 transcriptional activator
D ECW_m2908 norR; DNA-binding transcriptional activator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D ECW_m2932 fhlA; DNA-binding transcriptional activator K15836 fhlA; formate hydrogenlyase transcriptional activator
D ECW_m0159 cdaR; DNA-binding transcriptional activator K02647 cdaR; carbohydrate diacid regulator
D ECW_m0816 modE; DNA-binding transcriptional dual regulator K02019 modE; molybdate transport system regulatory protein
D ECW_m3827 yiaG; predicted transcriptional regulator K07726 K07726; putative transcriptional regulator
D ECW_m3660 Predicted transcriptional regulator K07726 K07726; putative transcriptional regulator
D ECW_m4195 conserved hypothetical protein, putative transcriptional regulator K07726 K07726; putative transcriptional regulator
D ECW_m2573 putative repressor Cro K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D ECW_m3743 nikR; DNA-binding protein transcriptional repressor, Ni-binding protein K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D ECW_m4295 metJ; DNA-binding protein transcriptional repressor, S-adenosylmethionine-binding protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D ECW_m1124 putA; fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D ECW_m1721 relB; Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
D ECW_m4022 bglG; transcriptional antiterminator of the bgl operon K03488 licT; beta-glucoside operon transcriptional antiterminator
D ECW_m4206 frvR; predicted regulator K18531 frvR; putative frv operon regulatory protein
C Others
D ECW_m0435 frmR; regulator protein that represses frmRAB operon K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D ECW_m2307 rcnR; transcriptional repressor K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression
D ECW_m0507 bolA; regulator of penicillin binding proteins and beta lactamase transcription (morphogene) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D ECW_P1m0003 ycjA; conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D ECW_m4142 rfaH; DNA-binding transcriptional antiterminator K05785 rfaH; transcriptional antiterminator RfaH
D ECW_m3504 argR; DNA-binding protein transcriptional dual regulator, L-arginine-binding protein K03402 argR; transcriptional regulator of arginine metabolism
D ECW_m0727 nagC; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine K02565 nagC; N-acetylglucosamine repressor
D ECW_m1759 dgsA; DNA-binding transcriptional repressor K15545 mlc; transcriptional regulator of PTS gene
D ECW_m3877 mtlR; DNA-binding repressor K02562 mtlR; mannitol operon repressor
D ECW_m1419 tyrR; DNA-binding protein transcriptional dual regulator, tyrosine-binding protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D ECW_m4494 cadC; DNA-binding transcriptional activator K03765 cadC; transcriptional activator of cad operon
D ECW_m3099 ygeH; putative invasion genes regulator K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1
D ECW_m2702 gcvR; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA K03567 gcvR; glycine cleavage system transcriptional repressor
D ECW_m1533 paaX; DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D ECW_m1399 pspF; DNA-binding transcriptional activator K03974 pspF; psp operon transcriptional activator
D ECW_m1402 pspC; DNA-binding transcriptional activator K03973 pspC; phage shock protein C
D ECW_m1641 lsrR; lsr operon transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor
D ECW_m1287 dhaR; predicted DNA-binding transcriptional regulator, dihydroxyacetone K05880 dhaR; transcriptional activator for dhaKLM operon
D ECW_m0665 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D ECW_m3941 hypothetical protein K07733 alpA; prophage regulatory protein
D ECW_m4642 predicted AlpA-like transcriptional regulator K07733 alpA; prophage regulatory protein
D ECW_m3206 yqgE; hypothetical protein K07735 algH; putative transcriptional regulator
D ECW_m0034 caiF; DNA-binding transcriptional activator K08277 caiF; transcriptional activator CaiF
D ECW_m0142 dksA; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D ECW_m0482 nrdR; conserved protein K07738 nrdR; transcriptional repressor NrdR
D ECW_m0354 crl; DNA-binding transcriptional regulator K11926 crl; sigma factor-binding protein Crl
D ECW_m3679 rtcR; sigma 54-dependent transcriptional regulator of rtcBA expression K14414 rtcR; transcriptional regulatory protein RtcR
D ECW_m1733 dicC; Qin prophage; DNA-binding transcriptional regulator for DicB K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D ECW_m0080 mraZ; conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
D ECW_m3290 ygiV; predicted transcriptional regulator K07471 ygiV; probable transcriptional regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024
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Classification taken and modified from TRANSFAC 7.0