+F Repair protein KO #

  DNA Repair and Recombination Proteins - Halalkalicoccus jeotgali

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D HacjB3_14290 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HacjB3_07660 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HacjB3_09055 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HacjB3_09295 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E HacjB3_11145 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E HacjB3_13630 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex E HacjB3_02015 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen E HacjB3_05215 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen E HacjB3_08280 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E HacjB3_04705 type III restriction protein res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E HacjB3_01015 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E HacjB3_10045 helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) E HacjB3_14720 replication factor A K07466 RFA1; replication factor A1 D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) E HacjB3_14720 replication factor A K07466 RFA1; replication factor A1 D RFC (replication factor C) D Other MMR factors E HacjB3_02015 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen E HacjB3_05215 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) E HacjB3_14720 replication factor A K07466 RFA1; replication factor A1 D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors D HacjB3_02015 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen D HacjB3_05215 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D HacjB3_07970 nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HacjB3_13225 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D HacjB3_14290 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D HacjB3_07660 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E HacjB3_00275 Uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HacjB3_03655 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HacjB3_08805 uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HacjB3_09910 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E HacjB3_08895 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E HacjB3_09055 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E HacjB3_11145 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E HacjB3_13630 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E HacjB3_12715 DNA-(apurinic or apyrimidinic site) lyase K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E HacjB3_12565 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E HacjB3_00555 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E HacjB3_13580 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E HacjB3_00805 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E HacjB3_00830 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E HacjB3_13505 repair helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors E HacjB3_14380 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E HacjB3_12920 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E HacjB3_01075 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E HacjB3_14385 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase E HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E HacjB3_13505 repair helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E HacjB3_12185 chromosome segregation protein K03546 sbcC; DNA repair protein SbcC/Rad50 E HacjB3_12190 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E HacjB3_00555 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E HacjB3_01350 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA E HacjB3_04475 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB E HacjB3_02055 Holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E HacjB3_05160 holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10] E HacjB3_12185 chromosome segregation protein K03546 sbcC; DNA repair protein SbcC/Rad50 E HacjB3_12190 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 E HacjB3_00750 ski2-like helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F HacjB3_11875 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F HacjB3_11870 DNA topoisomerase II subunit B (DNA gyrase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F HacjB3_00095 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F HacjB3_13035 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F HacjB3_00555 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F HacjB3_13580 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F HacjB3_00805 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D HacjB3_09220 DNA-directed DNA polymerase K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7] C Other SOS response factors B Other factors with a suspected DNA repair function C DNA polymerase D HacjB3_12550 PHP domain protein K02347 polX; DNA polymerase (family X) C DNA helicases D HacjB3_09410 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D HacjB3_09130 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D HacjB3_07970 nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D HacjB3_13225 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D HacjB3_00815 ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HacjB3_03835 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D HacjB3_00820 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D HacjB3_07625 Ribonucleotide reductase beta subunit-like protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D HacjB3_14055 hypothetical protein K22585 nreA; DNA repair protein NreA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024