+F Repair protein KO
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DNA Repair and Recombination Proteins - Halalkalicoccus jeotgali
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D HacjB3_14290 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D HacjB3_07660 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E HacjB3_09055 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E HacjB3_09295 8-oxoguanine DNA glycosylase domain protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E HacjB3_11145 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E HacjB3_13630 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
E HacjB3_02015 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
E HacjB3_05215 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
E HacjB3_08280 flap endonuclease-1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E HacjB3_04705 type III restriction protein res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E HacjB3_01015 DEAD_2 domain protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E HacjB3_10045 helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D RPA (replication factor A)
E HacjB3_14720 replication factor A K07466 RFA1; replication factor A1
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
E HacjB3_14720 replication factor A K07466 RFA1; replication factor A1
D RFC (replication factor C)
D Other MMR factors
E HacjB3_02015 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
E HacjB3_05215 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
E HacjB3_14720 replication factor A K07466 RFA1; replication factor A1
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
D HacjB3_02015 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
D HacjB3_05215 Proliferating cell nuclear antigen, PCNA K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D HacjB3_07970 nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D HacjB3_13225 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D HacjB3_14290 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D HacjB3_07660 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E HacjB3_00275 Uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E HacjB3_03655 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E HacjB3_08805 uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E HacjB3_09910 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E HacjB3_08895 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E HacjB3_09055 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E HacjB3_11145 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E HacjB3_13630 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E HacjB3_12715 DNA-(apurinic or apyrimidinic site) lyase K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E HacjB3_12565 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E HacjB3_00555 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E HacjB3_13580 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
E HacjB3_00805 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E HacjB3_00830 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E HacjB3_13505 repair helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E HacjB3_14380 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E HacjB3_12920 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E HacjB3_01075 DNA mismatch repair protein MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E HacjB3_14385 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
E HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E HacjB3_13505 repair helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E HacjB3_12185 chromosome segregation protein K03546 sbcC; DNA repair protein SbcC/Rad50
E HacjB3_12190 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E HacjB3_00555 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E HacjB3_01350 radA; DNA repair and recombination protein RadA K04483 radA; DNA repair protein RadA
E HacjB3_04475 radB; DNA repair and recombination protein RadB K04484 radB; DNA repair protein RadB
E HacjB3_02055 Holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
E HacjB3_05160 holliday junction resolvase K03552 hjr; holliday junction resolvase [EC:3.1.21.10]
E HacjB3_12185 chromosome segregation protein K03546 sbcC; DNA repair protein SbcC/Rad50
E HacjB3_12190 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
E HacjB3_00750 ski2-like helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F HacjB3_11875 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F HacjB3_11870 DNA topoisomerase II subunit B (DNA gyrase) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F HacjB3_00095 hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F HacjB3_13035 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F HacjB3_00555 phosphoesterase DHHA1 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F HacjB3_00855 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F HacjB3_13580 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
F HacjB3_00805 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D HacjB3_09220 DNA-directed DNA polymerase K04479 dbh; DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
D HacjB3_12550 PHP domain protein K02347 polX; DNA polymerase (family X)
C DNA helicases
D HacjB3_09410 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D HacjB3_09130 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D HacjB3_07970 nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D HacjB3_13225 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D HacjB3_00815 ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D HacjB3_03835 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D HacjB3_00820 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D HacjB3_07625 Ribonucleotide reductase beta subunit-like protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D HacjB3_14055 hypothetical protein K22585 nreA; DNA repair protein NreA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024