+E Transcription factors KO #

  Transcription Factors - Halothiobacillus neapolitanus

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Hneap_2116 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator C LysR family D Hneap_2173 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Hneap_2339 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Hneap_1091 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Hneap_0213 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Hneap_1096 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator C DeoR family C LacI family C GntR family D Hneap_2365 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Hneap_2382 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D Hneap_1603 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Hneap_1699 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Hneap_1668 hypothetical protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D Hneap_0165 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Hneap_2390 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family C MarR family D Hneap_0661 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin C MerR family D Hneap_1213 transcriptional regulator, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein D Hneap_1577 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D Hneap_0987 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Hneap_0554 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family C CRP/FNR family D Hneap_1873 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Hneap_1461 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein C Rrf2 family D Hneap_2189 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Hneap_1302 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Hneap_0930 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D Hneap_1532 transcriptional regulator, ArsR family K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] C XRE family C PadR family C Other families D Hneap_1121 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D Hneap_0307 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Hneap_1692 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D Hneap_0431 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Hneap_2207 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein D Hneap_1585 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein D Hneap_0810 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Hneap_1405 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Hneap_0975 putative transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family D Hneap_0795 transcriptional regulator NikR, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator C Other families D Hneap_1626 CopG domain protein DNA-binding domain protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D Hneap_0031 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Hneap_2334 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Hneap_1670 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Hneap_0639 amino acid-binding ACT domain-containing protein K03567 gcvR; glycine cleavage system transcriptional repressor D Hneap_2032 amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor D Hneap_1354 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Hneap_0482 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein D Hneap_0395 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D Hneap_1356 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator D Hneap_0509 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Hneap_1870 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Hneap_0441 MraZ protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0