+F Repair protein KO
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DNA Repair and Recombination Proteins - Laribacter hongkongensis
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LHK_00364 Probable methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LHK_02646 phrB; PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E LHK_00013 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LHK_02781 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LHK_01218 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D LHK_00639 coaD; CoaD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LHK_01910 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D LHK_00364 Probable methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LHK_00147 Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D LHK_02646 phrB; PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E LHK_00013 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E LHK_00550 Probable DNA-directed DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E LHK_01743 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E LHK_02781 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E LHK_00316 fpg; Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E LHK_01218 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E LHK_03213 exoA; ExoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E LHK_02447 xthA; XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E LHK_02397 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E LHK_02983 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E LHK_01605 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
E LHK_00960 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E LHK_02627 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
E LHK_00065 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LHK_02983 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
E LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F LHK_00246 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F LHK_00247 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F LHK_00279 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F LHK_00457 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F LHK_00629 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E LHK_00373 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E LHK_01012 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E LHK_01101 xseA; XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E LHK_02322 ex7S; Ex7S K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E LHK_01389 DNA-directed DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E LHK_03241 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E LHK_01415 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E LHK_00117 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E LHK_02696 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E LHK_02526 Probable DNA-directed DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E LHK_01009 Probable DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E LHK_00881 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E LHK_00963 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E LHK_00065 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E LHK_01496 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E LHK_01479 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
E LHK_01749 Probable methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E LHK_00398 Probable methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E LHK_02602 Probable methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E LHK_03243 Putative DNA mismatch endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E LHK_01202 recB-1; RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E LHK_01203 recC; RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E LHK_01201 Exonuclease V alpha subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E LHK_00793 recA; RecA K03553 recA; recombination protein RecA
E LHK_03111 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E LHK_00086 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LHK_03190 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E LHK_02821 priA; PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E LHK_00793 recA; RecA K03553 recA; recombination protein RecA
E LHK_02039 radA; RadA K04485 radA; DNA repair protein RadA/Sms
E LHK_02776 recG; RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E LHK_02397 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E LHK_01467 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E LHK_00965 recR; RecR K06187 recR; recombination protein RecR
E LHK_01210 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E LHK_00720 rdgC; RdgC K03554 rdgC; recombination associated protein RdgC
E LHK_03111 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E LHK_00086 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E LHK_03190 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F LHK_01836 gyrA; GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F LHK_03242 gyrB; GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F LHK_03143 topA; TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F LHK_02180 hupB2; HupB2 K03530 hupB; DNA-binding protein HU-beta
F LHK_02345 hupB1; HupB1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F LHK_02397 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F LHK_01467 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F LHK_00965 recR; RecR K06187 recR; recombination protein RecR
F LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F LHK_03207 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F LHK_02751 ihfA; IhfA K04764 ihfA; integration host factor subunit alpha
F LHK_00870 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F LHK_02771 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F LHK_01605 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A
F LHK_00960 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
F LHK_00853 Probable trans-acting regulatory HvrA protein K03746 hns; DNA-binding protein H-NS
F LHK_00959 Probable trans-acting regulatory HvrA protein K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D LHK_01833 DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D LHK_01580 UmuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D LHK_00793 recA; RecA K03553 recA; recombination protein RecA
D LHK_01210 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D LHK_01496 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D LHK_01479 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D LHK_00794 oraA; OraA K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D LHK_00318 rep; Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D LHK_02134 dinG; DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D LHK_00639 coaD; CoaD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LHK_01910 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LHK_01803 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LHK_01596 nrdE; NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LHK_01801 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024