+F Repair protein KO #

  DNA Repair and Recombination Proteins - Laribacter hongkongensis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LHK_00364 Probable methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LHK_02646 phrB; PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LHK_00013 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LHK_02781 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LHK_01218 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LHK_00639 coaD; CoaD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LHK_01910 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LHK_00364 Probable methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LHK_00147 Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LHK_02646 phrB; PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LHK_00013 ung; Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LHK_00550 Probable DNA-directed DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E LHK_01743 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E LHK_02781 mutY; MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LHK_00316 fpg; Fpg K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LHK_01218 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LHK_03213 exoA; ExoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LHK_02447 xthA; XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E LHK_02397 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LHK_02983 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LHK_01605 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A E LHK_00960 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E LHK_02627 UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E LHK_00065 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LHK_02983 polA; PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LHK_00246 rpoB; RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LHK_00247 rpoC; RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LHK_00279 rpoA; RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LHK_00457 rpoZ; RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LHK_00629 mfd; Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LHK_00373 mutS; MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E LHK_01012 mutL; MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LHK_01101 xseA; XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LHK_02322 ex7S; Ex7S K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LHK_01389 DNA-directed DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LHK_03241 dnaN; DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LHK_01415 holC; HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E LHK_00117 holA; HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LHK_02696 holB; HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LHK_02526 Probable DNA-directed DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LHK_01009 Probable DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LHK_00881 dnaQ; DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E LHK_00963 dnaX; DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LHK_00065 uvrD; UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LHK_01496 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E LHK_01479 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E LHK_01749 Probable methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E LHK_00398 Probable methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E LHK_02602 Probable methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E LHK_03243 Putative DNA mismatch endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LHK_01202 recB-1; RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E LHK_01203 recC; RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E LHK_01201 Exonuclease V alpha subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LHK_00793 recA; RecA K03553 recA; recombination protein RecA E LHK_03111 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LHK_00086 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LHK_03190 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E LHK_02821 priA; PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E LHK_00793 recA; RecA K03553 recA; recombination protein RecA E LHK_02039 radA; RadA K04485 radA; DNA repair protein RadA/Sms E LHK_02776 recG; RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LHK_02397 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LHK_01467 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) E LHK_00965 recR; RecR K06187 recR; recombination protein RecR E LHK_01210 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E LHK_00720 rdgC; RdgC K03554 rdgC; recombination associated protein RdgC E LHK_03111 ruvA; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E LHK_00086 ruvB; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LHK_03190 ruvC; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LHK_01836 gyrA; GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LHK_03242 gyrB; GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LHK_03143 topA; TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LHK_02180 hupB2; HupB2 K03530 hupB; DNA-binding protein HU-beta F LHK_02345 hupB1; HupB1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LHK_02397 recJ; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LHK_01467 recO; RecO K03584 recO; DNA repair protein RecO (recombination protein O) F LHK_00965 recR; RecR K06187 recR; recombination protein RecR F LHK_02877 dnlJ; DnlJ K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F LHK_03207 fis; Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F LHK_02751 ihfA; IhfA K04764 ihfA; integration host factor subunit alpha F LHK_00870 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F LHK_02771 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LHK_01605 uvrA; UvrA K03701 uvrA; excinuclease ABC subunit A F LHK_00960 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B F LHK_00853 Probable trans-acting regulatory HvrA protein K03746 hns; DNA-binding protein H-NS F LHK_00959 Probable trans-acting regulatory HvrA protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LHK_01833 DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D LHK_01580 UmuD protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D LHK_00793 recA; RecA K03553 recA; recombination protein RecA D LHK_01210 recN; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LHK_01496 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D LHK_01479 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D LHK_00794 oraA; OraA K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D LHK_00318 rep; Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D LHK_02134 dinG; DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LHK_00639 coaD; CoaD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LHK_01910 dut; Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LHK_01803 nrdA; NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LHK_01596 nrdE; NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LHK_01801 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024