+D GENES KO
#
KEGG Orthology (KO) - Lawsonia intracellularis PHE/MN1-00
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:lip00010]
D LI1076 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D LI0879 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D LI0369 fbp; Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D LI0228 glpX; Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D LI0763 fba; Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D LI1132 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D LI0764 gapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LI1119 gapB; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LI0464 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D LI1015 gmpA; phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D LI0091 eno; Enolase (2-phosphoglycerate dehydratase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LI1095 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D LI0025 ppsA; phosphoenolpyruvate synthase/pyruvate phosphate dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D LI0278 porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D LI0790 vorB; ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D LI0791 porB; ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:lip00020]
D LI0790 vorB; ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D LI0791 porB; ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D LI0792 porB; ferredoxin oxidoreductases, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D LI0294 fumA; fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D LI0293 fumB; fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D LI0278 porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:lip00030]
D LI0879 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LI0218 rpe; Pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D LI0219 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D LIC016 tal; transaldolase, putative K00616 TALDO1; transaldolase [EC:2.2.1.2]
D LI0609 rpiB; Ribose 5-phosphate isomerase RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D LI0736 prsA; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D LI0763 fba; Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D LI0369 fbp; Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D LI0228 glpX; Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:lip00040]
D LI0730 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LIC014 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LI0193 galU; UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LI0218 rpe; Pentose-5-phosphate-3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:lip00051]
D LI0984 xanB; phosphomannose isomerase/GDP-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D LIC082 gmd; GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D LIC080 GDP-L-fucose synthetase-related K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D LI0369 fbp; Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D LI0228 glpX; Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D LI0763 fba; Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D LI1132 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D LI0609 rpiB; Ribose 5-phosphate isomerase RpiB K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:lip00052]
D LIC023 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LI0379 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LIC023-2 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LI0193 galU; UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D LI1076 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00053 Ascorbate and aldarate metabolism [PATH:lip00053]
D LI0730 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LIC014 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LI0580 nucleoside-diphosphate-sugar epimerases K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:lip00500]
D LI0193 galU; UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LI0332 glgP; carbohydrate phosphorylase family protein K16153 K16153; glycogen phosphorylase/synthase [EC:2.4.1.1 2.4.1.11]
D LI0331 amyA; alpha-amylase K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D LI1076 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D LI0879 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:lip00520]
D LI0661 glmS; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D LI0192 phosphomannomutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D LI0801 glmU; N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D LIC010 putative nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D LI0838 murA; UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LI1106 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D LIC097 WblB protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D LIC095 DegT/DnrJ/EryC1/StrS family protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D LIC094 WblC protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D LIC093 UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D LI0466 galE; nucleoside-diphosphate-sugar epimerases K12448 UXE; UDP-arabinose 4-epimerase [EC:5.1.3.5]
D LI1076 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D LI0193 galU; UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LI0730 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LIC014 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LIC023 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LI0379 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LIC023-2 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LI0580 nucleoside-diphosphate-sugar epimerases K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D LI0879 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LI0984 xanB; phosphomannose isomerase/GDP-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D LIC082 gmd; GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D LIB010 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D LIB016 putative perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102]
D LIC080 GDP-L-fucose synthetase-related K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
C 00620 Pyruvate metabolism [PATH:lip00620]
D LI0278 porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D LI0790 vorB; ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D LI0791 porB; ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D LI0280 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D LI0279 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LI1095 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D LI0489 Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D LI0655 gloB; Zn-dependent hydrolases, including glyoxylases K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D LI0351 mdh; malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D LI0294 fumA; fumarate hydratase K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D LI0293 fumB; fumarate hydratase K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D LI0025 ppsA; phosphoenolpyruvate synthase/pyruvate phosphate dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:lip00630]
D LI0842 katE; catalase HPII K03781 katE; catalase [EC:1.11.1.6]
D LI1043 hprA; Lactate dehydrogenase and related dehydrogenases K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D LI0364 gph; predicted phosphatases K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D LI0159 glyA; Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LI0108 dapA; Dihydrodipicolinate synthase/N-acetylneuraminate lyase K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.3.16]
C 00640 Propanoate metabolism [PATH:lip00640]
D LI0280 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D LI0279 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LI0489 Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
C 00650 Butanoate metabolism [PATH:lip00650]
D LI0261 gad; glutamate decarboxylase isozyme K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D LI0278 porA; Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D LI0790 vorB; ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D LI0791 porB; ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D LI0106 ilv; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism
D LI0106 ilv; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
C 00562 Inositol phosphate metabolism [PATH:lip00562]
D LI0438 PhyA2 K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D LI0436 PhyA2 K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D LI1132 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:lip00190]
D LI0275 cyoB; Cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D LI0276 cyoA; Cytochrome bd-type quinol oxidase, subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D LI0401 atpD; F1F0-ATPase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D LI0403 atpB; proton ATPase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D LI0402 atpC; F0F1-type ATP synthase, subunit c K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D LI0400 atpE; F1F0-ATPase delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D LI0404 atpA; ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D LI1057 atpA; F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D LI0399 atpF; F0F1-type ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D LI1058 atpC; F0F1-type ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:lip00680]
D LI0159 glyA; Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LI1043 hprA; Lactate dehydrogenase and related dehydrogenases K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D LI0091 eno; Enolase (2-phosphoglycerate dehydratase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LI0763 fba; Fructose/tagatose bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D LI0369 fbp; Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D LI0228 glpX; Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D LI0280 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D LI0279 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LI0025 ppsA; phosphoenolpyruvate synthase/pyruvate phosphate dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D LI1015 gmpA; phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D LI0671 serA; phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00910 Nitrogen metabolism [PATH:lip00910]
D LI1002 nrfA; Chain A, Cytochrome C Nitrite Reductase K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D LI1001 napC; cytochrome c nitrite reductase small subunit K15876 nrfH; cytochrome c nitrite reductase small subunit
D LI1116 priS; 6Fe-6S prismane cluster-containing protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D LI1075 ncd2; Dioxygenases related to 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D LI0325 gltD; NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D LI0467 cynT; carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism
D LI0536 mgpa; Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:lip00061]
D LI0489 Acetyl-CoA carboxylase alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D LI0227 fabD; (acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D LI0162 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D LI0160 fabF_fabB; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D LI0161 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI0419 short chain dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI1020 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D LI0350 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:lip00561]
D LI0163 plsX; Fatty acid/phospholipid biosynthesis enzyme K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D LI0198 predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D LI0013 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D LI0101 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:lip00564]
D LI0828 gpsA; Glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D LI1086 glpA; Anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D LI1085 anaerobic glycerol-3-phosphate dehydrogenase, subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D LI1084 Fe-S oxidoreductase K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D LI0198 predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D LI0013 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D LI0101 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D LI0385 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D LI0777 Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D LI0776 psd; Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D LI0373 pgsA; Phosphatidylglycerophosphate synthase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D LI0564 pgpA; Phosphatidylglycerophosphatase A and related proteins K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D LI0593 cls; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:lip00230]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D LI0736 prsA; phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D LI0938 purF; Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D LI0921 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D LI0118 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D LI0450 purL; phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D LI0516 purL; phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3]
D LI0296 purM; phosphoribosylaminoimidazole (AIR) synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D LI0922 purK; phosphoribosylcarboxyaminoimidazole (NCAIR) mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D LI0349 purC; phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D LI0997 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D LI0200 purH; AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D LI1171 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D LI0762 surE; predicted acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D LI0769 uncharacterized conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D LI0591 guaB; IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D LI1121 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D LI0679 Xanthosine triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D LI0590 guaA; GMP synthase-Glutamine amidotransferase domain K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D LI0310 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D LI0476 nrdA; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LI0477 nrdB; Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LI0170 relA; Guanosine polyphosphate pyrophosphohydrolases/synthetases K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D LI1110 uncharacterized protein conserved in bacteria K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D LI0202 purA; Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D LI0780 fruK; Sugar kinases, ribokinase family K00856 ADK; adenosine kinase [EC:2.7.1.20]
D LI0317 Adenylate kinase and related kinases K00939 adk; adenylate kinase [EC:2.7.4.3]
D LI0075 icc; phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D LI0237 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
C 00240 Pyrimidine metabolism [PATH:lip00240]
D LI0939 carB; Carbamoylphosphate synthase large subunit (split gene in MJ) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D LI0990 carA; Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate synthetase glutamine chain) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D LI0818 pyrB; Aspartate carbamoyltransferase, catalytic chain K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D LI0819 pyrC; Dihydroorotase and related cyclic amidohydrolases K01465 URA4; dihydroorotase [EC:3.5.2.3]
D LI0712 pyrD; Dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D LI0713 pyrDII; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D LI0998 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D LI0311 pyrF; Orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D LI0382 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D LI1121 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D LI0702 maf; nucleotide-binding protein implicated in inhibition of septum formation K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D LI0451 pyrG; CTP synthase (UTP-ammonia lyase) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D LI0910 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D LI1171 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D LI0762 surE; predicted acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D LI0015 upp; Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D LI0476 nrdA; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LI0477 nrdB; Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LI0760 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D LI0088 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LI1188 thyA; predicted alternative thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:lip00250]
D LI0362 nadB; Aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D LIB007 asnB; putative asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D LI0913 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D LI0656 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D LI0657 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D LI0202 purA; Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D LI0997 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D LI0818 pyrB; Aspartate carbamoyltransferase, catalytic chain K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D LI0261 gad; glutamate decarboxylase isozyme K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D LI0325 gltD; NADPH-dependent glutamate synthase beta chain and related oxidoreductases K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D LI0939 carB; Carbamoylphosphate synthase large subunit (split gene in MJ) K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D LI0990 carA; Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate synthetase glutamine chain) K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D LI0450 purL; phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D LI0661 glmS; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D LI0938 purF; Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:lip00260]
D LI1003 lysC; Aspartokinases K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LI0951 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D LI0159 glyA; Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LI1043 hprA; Lactate dehydrogenase and related dehydrogenases K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D LI1015 gmpA; phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D LI0671 serA; phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LI0777 Phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D LI0410 trpA; bifunctional tryptophan synthase TRPB K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D LI0411 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:lip00270]
D LI0726 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D LI0769 uncharacterized conserved protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D LI0478 Cytosine deaminase and related metal-dependent hydrolases K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D LI0389 Modification methylase BepI (Cytosine-specific methyltransferase BepI) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D LI0670 ahcY; S-adenosylhomocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D LI1003 lysC; Aspartokinases K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LI0951 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D LI0950 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LI0915 livE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LI0671 serA; phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:lip00280]
D LI0950 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LI0915 livE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:lip00290]
D LI0106 ilv; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D LI0950 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LI0915 livE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:lip00300]
D LI1003 lysC; Aspartokinases K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LI0951 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D LI0896 dapA; Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D LI0243 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D LI0087 argD; Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D LI0895 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D LI0435 aspC; Aspartate/tyrosine/aromatic aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D LI0553 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D LI1099 murE; UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D LI1100 murF; UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
C 00220 Arginine biosynthesis [PATH:lip00220]
D LI1113 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D LI0656 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D LI0657 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D LI0450 purL; phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D LI0714 argJ; N-acetylglutamate synthase (N-acetylornithine aminotransferase) K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D LI0333 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D LI0099 argC; Acetylglutamate semialdehyde dehydrogenase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D LI0087 argD; Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:lip00330]
D LI1120 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D LI0108 dapA; Dihydrodipicolinate synthase/N-acetylneuraminate lyase K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.3.16]
C 00340 Histidine metabolism
D LI0725 hisB; Histidinol phosphatase and related hydrolases of the PHP family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
C 00350 Tyrosine metabolism
C 00360 Phenylalanine metabolism
C 00380 Tryptophan metabolism [PATH:lip00380]
D LI0415 probable kynureninase (kyurenine hydrolase) K01556 KYNU; kynureninase [EC:3.7.1.3]
D LI0842 katE; catalase HPII K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:lip00400]
D LI0659 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D LI0414 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D LI0412 trpF; phosphoribosyl anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D LI0413 trpC_2; Probable indole-3-glycerol phosphate synthase protein K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D LI0410 trpA; bifunctional tryptophan synthase TRPB K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D LI0411 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D LI0261 gad; glutamate decarboxylase isozyme K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
C 00430 Taurine and hypotaurine metabolism [PATH:lip00430]
D LI0261 gad; glutamate decarboxylase isozyme K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D LI0279 pta; phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D LI0280 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:lip00450]
D LI0366 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D LI0132 selA; Selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D LI1183 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism
D LI0159 glyA; Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:lip00470]
D LI0034 alr; alanine racemase, catabolic K01775 alr; alanine racemase [EC:5.1.1.1]
D LI0682 ddlA; D-alanine-D-alanine ligase and related ATP-grasp enzymes K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LI0450 purL; phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D LI0867 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D LI1102 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D LI0895 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D LI0553 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:lip00480]
D LI0686 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:lip00540]
D LI1019 lpxA; acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D LI0627 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D LI1021 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D LI1118 uncharacterized protein conserved in bacteria K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D LI1055 lpxB; Lipid A disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D LI0595 lpxK; Tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D LI0083 kpsF; FOG: CBS domain K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D LI0452 kdsA; 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D LI0453 Low specificity phosphatase (HAD superfamily) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D LI0989 CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D LI0681 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D LI0871 htrB; acyltransferase, HtrB/MsbB family K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D LI1010 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D LIC018 Sugar isomerase family protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D LIA019 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D LI0816 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D LI0130 hisJ; Histidinol phosphatase and related phosphatases K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D LI0019 tagD; glycerol-3-phosphate cytidyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D LI0621 nucleoside-diphosphate-sugar epimerases K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D LIA008 mvaK1; putative galactokinase/mevalonate kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D LIC011 mvaK1; putative galactokinase/mevalonate kinase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D LI0698 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D LI0092 rfaF_rfaQ; ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D LI0846 Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I) K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:lip00541]
D LI0193 galU; UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D LIC023 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LI0379 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LIC023-2 galE; nucleoside-diphosphate-sugar epimerases K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D LI0730 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LIC014 ugd; predicted UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D LI0580 nucleoside-diphosphate-sugar epimerases K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D LI0577 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LI1066 rfbB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LIC004 rfbC; dTDP-6-deoxy-D-glucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D LI1065 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D LI0984 xanB; phosphomannose isomerase/GDP-mannose pyrophosphorylase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D LIC082 gmd; GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D LIC080 GDP-L-fucose synthetase-related K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D LIB010 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D LIB016 putative perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102]
D LI0801 glmU; N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D LIC093 UDP-N-acetyl-D-mannosaminuronate dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D LIC097 WblB protein K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D LIC095 DegT/DnrJ/EryC1/StrS family protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D LIC094 WblC protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:lip00550]
D LI0838 murA; UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LI1106 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D LI1105 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D LI1102 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D LI1099 murE; UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D LI0682 ddlA; D-alanine-D-alanine ligase and related ATP-grasp enzymes K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LI1100 murF; UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D LI0384 yaeS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D LI0557 bacA; uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D LI1101 mraY; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D LI1104 murG; UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D LI0347 flgE; Flagellar hook protein FlgE K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D LI0395 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D LI1098 ftsI; cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:lip00552]
D LI0557 bacA; uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:lip00543]
D LIC030 predicted membrane protein involved in D-alanine export K19294 algI; alginate O-acetyltransferase complex protein AlgI
D LI0479 alginate O-acetylation protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:lip00730]
D LI0937 thiC; Thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D LI0782 thiD; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D LI0506 thiF; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D LI0265 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LI0505 thiH; Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D LI0408 dsx; Deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D LI0504 thiG; uncharacterized enzyme of thiazole biosynthesis K03149 thiG; thiazole synthase [EC:2.8.1.10]
D LI0324 thiE; Thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D LI0673 thiL; Thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D LI0317 Adenylate kinase and related kinases K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:lip00740]
D LI0155 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D LI0157 ribD; Pyrimidine reductase, riboflavin biosynthesis K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D LI0154 ribH; Riboflavin synthase beta-chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D LI0156 ribE; Riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D LI0709 ribF; FAD synthase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D LI0438 PhyA2 K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D LI0436 PhyA2 K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
C 00750 Vitamin B6 metabolism
C 00760 Nicotinate and nicotinamide metabolism [PATH:lip00760]
D LI0362 nadB; Aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D LI0361 Quinolinate synthase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D LI0360 nadC; Nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D LI1171 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D LI0762 surE; predicted acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D LI0062 ybeN; Nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D LI0244 nadE; NH(3)-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D LI1009 yfjB; predicted sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:lip00770]
D LI0106 ilv; acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D LI0090 Putative transcriptional regulator, homolog of Bvg accessory factor K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D LI0582 phosphopantothenoylcysteine synthetase/decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D LI0282 kdtB; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D LI0731 acpS; holo-[acyl-carrier protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D LI0950 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LI0915 livE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:lip00780]
D LI0424 bioC; Ubie_methyltran, ubiE/COQ5 methyltransferase family K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D LI0160 fabF_fabB; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D LI0161 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI0419 short chain dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI1020 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D LI0350 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D LI0422 hypothetical protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D LI0421 bioF; 7-keto-8-aminopelargonate synthetase and related enzymes K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D LI0426 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D LI0425 bioD; Dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D LI0420 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D LI0026 birA; Biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:lip00790]
D LI1091 uncharacterized conserved protein K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D LI0240 folk; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D LI0189 folP; Dihydropteroate synthase and related enzymes K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D LI0131 folC; Folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D LI0155 ribA; GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D LI0258 F0F1-type ATP synthase, subunit c K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D LI0799 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D LI0800 Conserved hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D LI0089 folE; conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:lip00670]
D LI0875 Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D LI0159 glyA; Glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D LI0118 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D LI0200 purH; AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D LI0766 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D LI1188 thyA; predicted alternative thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D LI0770 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:lip00860]
D LI0462 gltX; Glutamyl-and glutaminyl-tRNA synthetases K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D LI0322 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D LI0906 hemL; Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D LI0205 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D LI1011 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D LI0117 cysG; Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D LI0320 cysG; Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D LI0207 nirD; transcriptional regulators K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D LI0907 nirH; transcriptional regulators K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111]
D LI0204 predicted Fe-S oxidoreductases K22226 ahbC; Fe-coproporphyrin III synthase
D LI0206 predicted Fe-S oxidoreductases K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D LI1067 Cobalamin biosynthesis protein CbiK, Co2+ chelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D LI0185 MoxR-like ATPases K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D LI0660 bfr; Bacterioferritin (cytochrome b1) K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:lip00130]
D LI0017 ubiE; Methylase involved in ubiquinone/menaquinone biosynthesis K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D LI0806 menE; O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D LI0807 menB; Dihydroxynapthoic acid synthetase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D LI0759 menA; hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D LI0757 menA; hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:lip00900]
D LI0408 dsx; Deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D LI0386 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D LI0446 4-diphosphocytidyl-2-methyl-D-erithritol synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D LI0735 ychB; 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D LI0024 gcpE; Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D LI0728 lytB; ribosomal protein S1 K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D LI1134 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D LI0407 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D LI0515 ispB; Geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D LI0384 yaeS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D LI0219 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:lip00523]
D LI0577 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LI1066 rfbB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LIC004 rfbC; dTDP-6-deoxy-D-glucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D LI1065 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D LI1066 rfbB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:lip00261]
D LI1003 lysC; Aspartokinases K00928 lysC; aspartate kinase [EC:2.7.2.4]
D LI0951 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D LI0896 dapA; Dihydrodipicolinate synthase/N-acetylneuraminate lyase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D LI0243 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:lip00521]
D LI1076 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D LI0674 unnamed protein product K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D LI0577 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LI1066 rfbB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D LIC004 rfbC; dTDP-6-deoxy-D-glucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D LI1065 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D LI1076 glk; Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:lip00525]
D LI0577 dTDP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D LI1066 rfbB; dTDP-D-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D LI0227 fabD; (acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D LI0161 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI0419 short chain dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI0350 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
C 00999 Biosynthesis of various plant secondary metabolites
D LI0726 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
D LI0440 hyaB; hydrogenase-1 large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D LI0439 hyaA; hydrogenase-1 small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:lip03020]
D LI0905 rpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D LI0904 rpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D LI0982 rpoA; DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:lip03010]
D LI0755 lytB; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D LI0377 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D LI0966 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D LI0981 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D LI0975 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D LI0352 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D LI0943 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D LI0972 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D LI0560 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D LI0959 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D LI0980 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D LI0942 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D LI0979 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D LI0968 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D LI0964 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D LI0932 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D LI0963 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D LI0960 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D LI0961 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D LI0971 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D LI0973 rplF; ribosomal protein L6P/L9E K02933 RP-L6; large subunit ribosomal protein L6
D LI0930 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D LI0353 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D LI0931 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D LI0933 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D LI0559 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D LI0969 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D LI0976 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D LI0967 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D LI0983 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D LI0974 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D LI0221 rplS; ribonuclease HII K02884 RP-L19; large subunit ribosomal protein L19
D LI0214 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D LI0623 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D LI0965 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D LI0962 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D LI0970 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D LI0737 ribosomal protein L25 (general stress protein Ctc) K02897 RP-L25; large subunit ribosomal protein L25
D LI0826 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
C 00970 Aminoacyl-tRNA biosynthesis [PATH:lip00970]
D LI0462 gltX; Glutamyl-and glutaminyl-tRNA synthetases K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D LI0885 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D LI1007 gatB; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D LI0886 Glutamyl-tRNA (Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D LI0493 glnS; Glutamyl-and glutaminyl-tRNA synthetases K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D LI1181 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D LI0987 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LI0704 asnS; Aspartyl/asparaginyl-tRNA synthetases K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D LI0300 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D LI0299 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D LI0212 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D LI0114 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D LI0132 selA; Selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D LI0608 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D LI1183 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D LI0766 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D LI0648 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D LI0152 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LI1051 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D LI1027 lysU; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D LI0229 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LI0390 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D LI0986 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D LI0215 pheS; Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D LI0216 pheT; Phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D LI0022 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LI0020 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:lip03060]
D LI0977 secY; Preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D LI1131 secG; Preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D LI0048 secD; Preprotein translocase subunit SecF K03072 secD; preprotein translocase subunit SecD
D LI0047 secF; Preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D LI0049 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D LI1070 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LI0630 secA; Preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LI0575 Signal renition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D LI0323 Signal renition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D LI0589 Sec-independent protein secretion pathway components K03117 tatB; sec-independent protein translocase protein TatB
D LI0588 tatC; Sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
D LI0923 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D LI1052 lsp; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:lip04122]
D LI0265 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LI0203 trmU; predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D LI0658 trmU; predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D LI0506 thiF; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:lip03018]
D LI0771 rne; Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D LI0091 eno; Enolase (2-phosphoglycerate dehydratase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LI1006 pnpA; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D LI0594 rnb; Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D LI0264 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D LI0802 predicted HD superfamily hydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D LI0561 predicted hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-]
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D LI0912 dnaK; Molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D LI0625 GroEL/HSP60 homolog K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:lip03030]
D LI0257 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D LI0916 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LI0011 polB; DNA polymerase I-3'-5' exonuclease and polymerase domains K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D LI0150 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LI0786 dnaN; DNA polymerase sliding clamp subunit (PCNA homolog) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LI0354 recQ; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D LIC081 recQ; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D LI0518 dnaG; DNA primase (bacterial type) K02316 dnaG; DNA primase [EC:2.7.7.101]
D LI0492 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI0756 rnh; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D LI0222 rplS; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D LI0242 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:lip03410]
D LI0778 nth; endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D LI0165 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D LI0637 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D LI0839 xthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D LI0313 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LI0242 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:lip03420]
D LI0305 transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D LI1177 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D LI0241 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D LI0701 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D LI0672 pcrA; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LI0242 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:lip03430]
D LI0236 mutS; Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS
D LI0628 mutL; DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL
D LI0672 pcrA; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LI0405 xseA; Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D LI0313 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LI0492 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI0257 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D LI0786 dnaN; DNA polymerase sliding clamp subunit (PCNA homolog) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LI0916 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LI0150 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LI0011 polB; DNA polymerase I-3'-5' exonuclease and polymerase domains K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D LI0242 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D LI0652 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:lip03440]
D LI0313 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LI0492 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI0301 recO; hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
D LI0918 recR; Recombinational DNA repair protein (RecF pathway) ref|ZP_00131299.1| 353: Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
D LI1182 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA
D LI1186 ruvA; Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D LI1187 ruvB; Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D LI0268 ruvC; Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D LI0287 recD; ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D LI0257 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D LI0786 dnaN; DNA polymerase sliding clamp subunit (PCNA homolog) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LI0916 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LI0150 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LI0011 polB; DNA polymerase I-3'-5' exonuclease and polymerase domains K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D LI0194 priA; Primosomal protein N' (replication factor Y)-superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:lip02010]
D LI0832 potD; Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D LI0831 potC; ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein
D LI0830 potB; ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein
D LI0829 potA; ABC-type spermidine/putrescine transport systems, ATPase components K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D LI0234 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D LI0233 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D LI1045 pqiB; Paraquat-inducible protein B K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D LI0231 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D LI1047 ttg2B; ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D LI0232 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D LI1046 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D LI0077 ugpB; probable extracellular solute-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D LI0078 ugpA; inner membrane component of binding-protein-dependent transport system K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D LI0079 inner membrane component of binding-protein-dependent transport system K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D LI0076 sugar ABC transporter, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D LI1028 Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D LI1029 pstC; phosphate transporter permease PstC K02037 pstC; phosphate transport system permease protein
D LI1030 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D LI1031 pstB; Phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D LI0754 glnH; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K10036 glnH; glutamine transport system substrate-binding protein
D LI0753 glnP; ABC-type amino acid transport system, permease component K10037 glnP; glutamine transport system permease protein
D LI0496 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D LI0339 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D LI0497 livH; branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D LI0338 livH; branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D LI0337 livM; branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D LI0498 livM; branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D LI0499 livG; branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D LI0336 livG; branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D LI0335 livF; branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D LI0500 livF; branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D LI0863 cbiM; CBIM protein K02007 cbiM; cobalt/nickel transport system permease protein
D LI0862 NA K02008 cbiQ; cobalt/nickel transport system permease protein
D LI0861 cbiO; ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D LI0864 NA K16915 cbiL; nickel transport protein
D LI1180 bioY; uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D LI1178 ABC-type cobalt transport system, permease component CbiQ and related transporters K16783 bioN; biotin transport system permease protein
D LI1179 cbiO; ABC-type cobalt transport system, ATPase component K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D LIC005 ABC transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D LI0468 rfbB; dTDP-D-glucose 4,6-dehydratase K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D LI1026 lolC; ABC-type transport system, involved in lipoprotein release, permease component K09808 lolC_E; lipoprotein-releasing system permease protein
D LI1025 lolD; ABC-type transport system, involved in lipoprotein release, permease component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D LI0953 ccmC; ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 ccmC; heme exporter protein C
D LI0954 ABC-type transport system involved in cytochrome c biogenesis, permease component K02194 ccmB; heme exporter protein B
D LI0955 ccmA_ccmB; ABC-type multidrug transport system, ATPase component K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D LI0882 predicted permeases K07091 lptF; lipopolysaccharide export system permease protein
D LI0881 predicted permeases K11720 lptG; lipopolysaccharide export system permease protein
D LI0456 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D LI0869 ABC-type multidrug transport system, ATPase and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:lip03070]
D LI0539 hypothetical protein K04056 yscO; type III secretion protein O
D LI1152 NA K04059 yscX; type III secretion protein X
D LI1160 YscC; putative type III secretion protein YscC K03219 yscC; type III secretion protein C
D LI1153 putative outer protein N K04058 yscW; type III secretion protein W
D LI0543 nolT; LscJ K03222 yscJ; type III secretion protein J
D LI1163 YscJ; putative type III secretion protein K03222 yscJ; type III secretion protein J
D LI0537 SctR; translocation protein in type III secretion K03226 yscR; type III secretion protein R
D LI0549 yscS; probable translocation protein in type III secretion K03227 yscS; type III secretion protein S
D LI0550 yscT; Type III secretion component protein SctT K03228 yscT; type III secretion protein T
D LI0551 yscU; translocation protein in type III secretion K03229 yscU; type III secretion protein U
D LI0548 yscV; putative type III secretion pore protein K03230 yscV; type III secretion protein V
D LI0540 sctN; Type III secretion component protein SctN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D LI0538 putative translocation protein in type III secretion K03225 yscQ; type III secretion protein Q
D LI1166 putative translocation protein in type III secretion K03225 yscQ; type III secretion protein Q
D LI0541 sctL; type III secretion protein, YopL family putative type III secretion protein K03223 yscL; type III secretion protein L
D LI1164 YscL; putative type III secretion protein K03223 yscL; type III secretion protein L
D LI0048 secD; Preprotein translocase subunit SecF K03072 secD; preprotein translocase subunit SecD
D LI0047 secF; Preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D LI1131 secG; Preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D LI0977 secY; Preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D LI0049 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D LI1070 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LI0630 secA; Preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LI0323 Signal renition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D LI0575 Signal renition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D LI0589 Sec-independent protein secretion pathway components K03117 tatB; sec-independent protein translocase protein TatB
D LI0588 tatC; Sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:lip02020]
D LI1028 Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D LI0346 htrA; trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D LI0710 fliC; Flagellin and related hook-associated proteins K02406 fliC; flagellin
D LI0570 fliC; Flagellin and related hook-associated proteins K02406 fliC; flagellin
D LI0482 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0486 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0787 dnaA; ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D LI0001 dnaA; ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D LI0306 predicted integral membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D LI0292 Svh K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D LI0260 ntrY; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D LI0687 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D LI1078 HydH; Signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D LI1079 hydG; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07713 zraR; two-component system, NtrC family, response regulator HydG
D LI0690 hypothetical protein K07803 zraP; zinc resistance-associated protein
D LI0457 rpoN; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog K03092 rpoN; RNA polymerase sigma-54 factor
D LI0439 hyaA; hydrogenase-1 small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D LI0440 hyaB; hydrogenase-1 large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D LI0441 hyaC; Probable Ni/Fe-hydrogenase 1 B-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D LI1139 cheR; Methylase of chemotaxis methyl-accepting proteins K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D LI0843 tsr; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D LIC103 pilJ; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D LI1170 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D LI1141 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D LI1144 cheA_2; Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D LI0526 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1142 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1137 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D LI0729 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D LI1117 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D LI1092 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D LI0275 cyoB; Cytochrome bd-type quinol oxidase, subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D LI0276 cyoA; Cytochrome bd-type quinol oxidase, subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D LI0633 flgM; hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:lip02024]
D LI0261 gad; glutamate decarboxylase isozyme K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D LI0262 Amino acid transporters K20265 gadC; glutamate:GABA antiporter
D LI0496 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D LI0339 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D LI0497 livH; branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D LI0338 livH; branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D LI0337 livM; branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D LI0498 livM; branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D LI0499 livG; branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D LI0336 livG; branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D LI0335 livF; branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D LI0500 livF; branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D LI0157 ribD; Pyrimidine reductase, riboflavin biosynthesis K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D LI0995 oprM; outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D LI0169 oppA; ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D LI0251 oppB; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein
D LI0250 oppC; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D LI1081 oppD; oligopeptide ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein
D LI0988 dppF; oligopeptide ABC transporter (ATP-binding protein) K02032 ddpF; peptide/nickel transport system ATP-binding protein
D LI1070 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LI1131 secG; Preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D LI0977 secY; Preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D LI0049 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D LI0630 secA; Preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LI0323 Signal renition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D LI0575 Signal renition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:lip02030]
D LI0843 tsr; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D LIC103 pilJ; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D LI1144 cheA_2; Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D LI1170 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D LI1141 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D LI0526 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1142 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1054 cheZ; Chemotaxis protein K03414 cheZ; chemotaxis protein CheZ
D LI1137 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D LI0729 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D LI1117 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D LI1139 cheR; Methylase of chemotaxis methyl-accepting proteins K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D LI0856 fliG; Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D LI0027 fliM; Flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D LI0641 fliN; Flagellar motor switch/type III secretory pathway protein K02417 fliN; flagellar motor switch protein FliN
D LI0482 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0486 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0483 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
D LI0487 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:lip02040]
D LI0858 fliE; Flagellar hook-basal body protein K02408 fliE; flagellar hook-basal body complex protein FliE
D LI0857 fliF; Flagellar biosynthesis/type III secretory pathway lipoprotein K02409 fliF; flagellar M-ring protein FliF
D LI0856 fliG; Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D LI0854 fliI; Flagellar biosynthesis/type III secretory pathway ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D LI1060 Flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ
D LI0568 Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D LI0642 fliL; Flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D LI0525 Flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D LI0027 fliM; Flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D LI0641 fliN; Flagellar motor switch/type III secretory pathway protein K02417 fliN; flagellar motor switch protein FliN
D LI0640 Flagellar biogenesis protein K02418 fliO; flagellar protein FliO/FliZ
D LI0639 fliP; Flagellar biosynthesis pathway, component FliP K02419 fliP; flagellar biosynthesis protein FliP
D LI0532 fliR; Flagellar biosynthesis pathway, component FliR K02421 fliR; flagellar biosynthesis protein FliR
D LI0530 Flagellar biosynthesis pathway, component FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D LI0531 flhB; Flagellar biosynthesis pathway, component FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D LI0742 hypothetical protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D LI0860 flgB; Flagellar basal body protein K02387 flgB; flagellar basal-body rod protein FlgB
D LI0859 flgC; Flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D LI0567 Flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D LI0566 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D LI0348 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D LI0740 flgF; Flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D LI0741 flgG; Flagellar basal body L-ring protein K02392 flgG; flagellar basal-body rod protein FlgG
D LI0743 flgG; Flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D LI0744 flgI; Flagellar basal-body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D LI0745 flgJ; membrane proteins related to metalloendopeptidases K02395 flgJ; peptidoglycan hydrolase FlgJ
D LI0747 flgK; Flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D LI0748 flgL; Flagellin and related hook-associated proteins K02397 flgL; flagellar hook-associated protein 3 FlgL
D LI0710 fliC; Flagellin and related hook-associated proteins K02406 fliC; flagellin
D LI0570 fliC; Flagellin and related hook-associated proteins K02406 fliC; flagellin
D LI0211 fliD; Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D LI0210 fliS; Flagellin-specific chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D LI0482 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0486 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0483 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
D LI0487 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
D LI0633 flgM; hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D LI0517 rpoD; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) K03086 rpoD; RNA polymerase primary sigma factor
D LI1092 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D LI0457 rpoN; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D LI0091 eno; Enolase (2-phosphoglycerate dehydratase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:lip01501]
D LI0993 acrA; probable multidrug efflux membrane permease K03585 acrA; membrane fusion protein, multidrug efflux system
D LI0994 acrB; acriflavin resistance protein D K18138 acrB; multidrug efflux pump
D LI0995 oprM; outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D LI0347 flgE; Flagellar hook protein FlgE K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D LI0395 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D LI1098 ftsI; cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:lip01502]
D LI0292 Svh K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D LI0682 ddlA; D-alanine-D-alanine ligase and related ATP-grasp enzymes K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LI0034 alr; alanine racemase, catabolic K01775 alr; alanine racemase [EC:5.1.1.1]
D LI1100 murF; UDP-N-acetylmuramyl pentapeptide synthase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D LI1101 mraY; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D LI1104 murG; UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:lip01503]
D LI1023 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D LI0346 htrA; trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D LI0993 acrA; probable multidrug efflux membrane permease K03585 acrA; membrane fusion protein, multidrug efflux system
D LI0994 acrB; acriflavin resistance protein D K18138 acrB; multidrug efflux pump
D LI1019 lpxA; acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D LI0306 predicted integral membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:lip01000]
C 01001 Protein kinases [BR:lip01001]
D LI1168 rsbW; sigma regulatory factor-histidine kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D LI0260 ntrY; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D LI1078 HydH; Signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D LI1144 cheA_2; Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:lip01009]
D LI0670 ahcY; S-adenosylhomocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 01002 Peptidases and inhibitors [BR:lip01002]
D LI1052 lsp; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D LI0442 hyaD; processing of HyaA and HyaB proteins K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D LI0590 guaA; GMP synthase-Glutamine amidotransferase domain K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D LI0947 cell wall-associated hydrolases (invasion-associated proteins) K13695 nlpC; probable lipoprotein NlpC
D LI0938 purF; Glutamine phosphoribosylpyrophosphate amidotransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D LI0661 glmS; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D LIB007 asnB; putative asparagine synthetase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D LI0758 hypothetical protein K07052 K07052; CAAX protease family protein
D LI0292 Svh K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D LI0650 predicted Zn-dependent peptidases, insulinase-like K06972 PITRM1; presequence protease [EC:3.4.24.-]
D LI0936 pqqL; predicted Zn-dependent peptidases K07263 pqqL; zinc protease [EC:3.4.24.-]
D LI0686 pepA; Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D LI0978 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D LI0823 pepQ; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D LI0314 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D LI0188 ftsH; ATP-dependent Zn proteases K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D LI0645 htpX; Zn-dependent protease with chaperone function K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D LI0387 predicted membrane-associated Zn-dependent proteases 1 K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D LI0346 htrA; trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D LI0794 clpP; Protease subunit of ATP-dependent Clp proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D LI0148 lon; predicted ATP-dependent protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D LI0796 lon; predicted ATP-dependent protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D LI0923 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D LI1123 prc; Periplasmic protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D LI0732 hslV; ATP-dependent protease HslVU (ClpYQ), peptidase subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D LI0676 hflC; membrane protease subunits, stomatin/prohibitin homologs K04087 hflC; modulator of FtsH protease HflC
D LI0675 hflK; membrane protease subunits, stomatin/prohibitin homologs K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:lip01003]
D LI0332 glgP; carbohydrate phosphorylase family protein K16153 K16153; glycogen phosphorylase/synthase [EC:2.4.1.1 2.4.1.11]
D LI0347 flgE; Flagellar hook protein FlgE K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:lip01005]
D LI1019 lpxA; acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D LI1055 lpxB; Lipid A disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D LI0627 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D LI1021 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D LI1118 uncharacterized protein conserved in bacteria K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D LI0595 lpxK; Tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D LI0871 htrB; acyltransferase, HtrB/MsbB family K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D LI0681 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D LI0452 kdsA; 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D LI0989 CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D LI0453 Low specificity phosphatase (HAD superfamily) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D LI0083 kpsF; FOG: CBS domain K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D LI0816 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D LI0019 tagD; glycerol-3-phosphate cytidyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D LI0698 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D LI0846 Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I) K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D LI0092 rfaF_rfaQ; ADP-heptose:LPS heptosyltransferase K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D LI1010 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D LIC018 Sugar isomerase family protein K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D LIA019 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D LI0130 hisJ; Histidinol phosphatase and related phosphatases K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D LI0621 nucleoside-diphosphate-sugar epimerases K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:lip01011]
D LI0838 murA; UDP-N-acetylglucosamine enolpyruvyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D LI1106 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D LI1105 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D LI1102 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D LI1099 murE; UDP-N-acetylmuramyl tripeptide synthase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D LI0682 ddlA; D-alanine-D-alanine ligase and related ATP-grasp enzymes K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D LI0034 alr; alanine racemase, catabolic K01775 alr; alanine racemase [EC:5.1.1.1]
D LI0867 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D LI1101 mraY; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D LI1104 murG; UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D LI0557 bacA; uncharacterized bacitracin resistance protein K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D LI0865 mviN; uncharacterized membrane protein, putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D LI0927 mviN; uncharacterized membrane protein, putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D LI0347 flgE; Flagellar hook protein FlgE K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D LI0395 cell division protein FtsI/penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D LI1098 ftsI; cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D LI0292 Svh K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D LI0723 mltA; membrane-bound lytic murein transglycosylase K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D LI1174 mltC; membrane-bound lytic murein transglycosylase C (MltC) K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D LI0055 mltD; membrane-bound lytic murein transglycosylase D (MltD) K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D LI0502 pabC; predicted periplasmic solute-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D LI1023 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:lip01004]
D LI0227 fabD; (acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D LI0162 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D LI0160 fabF_fabB; 3-oxoacyl-(acyl-carrier-protein) synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D LI0161 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI0419 short chain dehydrogenase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D LI1020 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D LI0350 fabI; Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D LI0163 plsX; Fatty acid/phospholipid biosynthesis enzyme K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D LI0198 predicted membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D LI0013 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:lip01006]
D LI0407 Geranylgeranyl pyrophosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D LI0515 ispB; Geranylgeranyl pyrophosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D LI0384 yaeS; Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D LI0281 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D LI0759 menA; hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D LI0757 menA; hypothetical protein K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
C 01007 Amino acid related enzymes [BR:lip01007]
D LI0462 gltX; Glutamyl-and glutaminyl-tRNA synthetases K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D LI0493 glnS; Glutamyl-and glutaminyl-tRNA synthetases K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D LI0022 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LI0020 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D LI0608 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D LI0229 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LI1183 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D LI1051 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D LI0648 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D LI0152 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LI1027 lysU; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D LI0987 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LI0704 asnS; Aspartyl/asparaginyl-tRNA synthetases K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D LI0986 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D LI0300 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D LI0299 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D LI0114 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D LI0390 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D LI0212 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D LI1181 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D LI0215 pheS; Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D LI0216 pheT; Phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D LI0435 aspC; Aspartate/tyrosine/aromatic aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D LI0421 bioF; 7-keto-8-aminopelargonate synthetase and related enzymes K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D LI0087 argD; Ornithine/acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D LI0426 bioA; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D LI0906 hemL; Glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D LI0950 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LI0915 livE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D LIC095 DegT/DnrJ/EryC1/StrS family protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D LIB010 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D LIB016 putative perosamine synthetase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:lip00194]
D LI0404 atpA; ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D LI0403 atpB; proton ATPase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D LI0402 atpC; F0F1-type ATP synthase, subunit c K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D LI0401 atpD; F1F0-ATPase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D LI0400 atpE; F1F0-ATPase delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D LI0399 atpF; F0F1-type ATP synthase, subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D LI1058 atpC; F0F1-type ATP synthase, subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D LI1057 atpA; F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:lip03000]
D LI0389 Modification methylase BepI (Cytosine-specific methyltransferase BepI) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D LI0060 glpR; transcriptional regulators of sugar metabolism K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D LI0035 fur; Fe2+/Zn2+ uptake regulation proteins K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D LI0026 birA; Biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D LI1092 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D LI1059 AT-rich DNA-binding protein K01926 rex; redox-sensing transcriptional repressor
D LI1090 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D LI0815 spo0J; predicted transcriptional regulators K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LI0015 upp; Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D LI0085 dnaK; Molecular chaperone dnaK K06204 dksA; RNA polymerase-binding transcription factor
D LI1096 mraZ; uncharacterized protein conserved in bacteria K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:lip03021]
D LI0982 rpoA; DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D LI0905 rpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D LI0904 rpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D LI0517 rpoD; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) K03086 rpoD; RNA polymerase primary sigma factor
D LI0613 sigB; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) K03089 rpoH; RNA polymerase sigma-32 factor
D LI0457 rpoN; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog K03092 rpoN; RNA polymerase sigma-54 factor
D LI0534 nusA; transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D LI0153 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
D LI0934 nusG; transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D LI1150 putative regulator K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D LI1168 rsbW; sigma regulatory factor-histidine kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D LI0085 dnaK; Molecular chaperone dnaK K06204 dksA; RNA polymerase-binding transcription factor
D LI0307 greA; transcription elongation factor greA K03624 greA; transcription elongation factor GreA
D LI0264 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:lip03019]
D LI0771 rne; Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D LI0571 rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D LI0561 predicted hydrolase of the metallo-beta-lactamase superfamily K12574 rnj; ribonuclease J [EC:3.1.-.-]
D LI0802 predicted HD superfamily hydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-]
D LI0594 rnb; Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D LI0761 cbf1; predicted HD-superfamily hydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D LI0091 eno; Enolase (2-phosphoglycerate dehydratase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LI1006 pnpA; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D LI0264 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D LI0052 pfp; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D LI0912 dnaK; Molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D LI0625 GroEL/HSP60 homolog K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LI0459 predicted P-loop-containing kinase K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:lip03011]
D LI0755 lytB; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D LI0377 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D LI0966 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D LI0981 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D LI0975 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D LI0352 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D LI0943 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D LI0972 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D LI0560 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D LI0959 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D LI0980 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D LI0942 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D LI0979 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D LI0968 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D LI0964 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D LI0932 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D LI0963 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D LI0960 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D LI0961 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D LI0971 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D LI0973 rplF; ribosomal protein L6P/L9E K02933 RP-L6; large subunit ribosomal protein L6
D LI0353 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D LI0931 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D LI0933 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D LI0930 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D LI0559 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D LI0969 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D LI0976 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D LI0967 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D LI0983 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D LI0974 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D LI0221 rplS; ribonuclease HII K02884 RP-L19; large subunit ribosomal protein L19
D LI0214 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D LI0623 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D LI0965 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D LI0962 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D LI0970 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D LI0826 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D LI0737 ribosomal protein L25 (general stress protein Ctc) K02897 RP-L25; large subunit ribosomal protein L25
C 03009 Ribosome biogenesis [BR:lip03009]
D LI0571 rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D LI0644 GTPase K03595 era; GTPase
D LI0622 predicted GTPase K03979 obgE; GTPase [EC:3.6.5.-]
D LI0085 dnaK; Molecular chaperone dnaK K06204 dksA; RNA polymerase-binding transcription factor
D LI0534 nusA; transcription elongation factor K02600 nusA; transcription termination/antitermination protein NusA
D LI0153 nusB; transcription termination factor K03625 nusB; transcription antitermination protein NusB
D LI0934 nusG; transcription antiterminator K02601 nusG; transcription termination/antitermination protein NusG
D LI0521 ksgA; rRNA (adenine-N6,N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D LI0876 tRNA and rRNA cytosine-C5-methylases K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D LI0283 N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D LI0016 uncharacterized protein conserved in bacteria K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D LI0432 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LI1097 predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D LI0224 predicted methyltransferases K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D LI0004 hly; hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D LI0054 rRNA methylases K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D LI0270 ygcA; 23S rRNA methylase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D LI0891 uncharacterized conserved protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D LI0326 predicted SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D LI0680 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D LI0868 rluB; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D LI0715 rluD; Pseudouridylate synthases, 23S RNA-specific K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D LI0813 rluD; Pseudouridylate synthases, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D LI1133 rimJ; Acetyltransferases K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D LI0573 RimM protein, required for 16S rRNA processing K02860 rimM; 16S rRNA processing protein RimM
D LI0678 2-methylthioadenine synthetase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D LI1130 ribosomal protein L11 methylase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D LI0771 rne; Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D LI0503 predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D LI0113 predicted GTPases K03977 engA; GTPase
D LI0889 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D LI0170 relA; Guanosine polyphosphate pyrophosphohydrolases/synthetases K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D LI0533 transcription elongation factor K09748 rimP; ribosome maturation factor RimP
D LI1014 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
D LI0900 predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
D LI0458 Ribosome-associated protein Y (PSrp-1) K05808 hpf; ribosome hibernation promoting factor
D LI0146 predicted GTPase, probable translation factor K06942 ychF; ribosome-binding ATPase
D LI0164 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:lip03016]
D LI0238 cca; polyA polymerase family protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D LI0462 gltX; Glutamyl-and glutaminyl-tRNA synthetases K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D LI0390 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D LI1051 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D LI0152 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LI1183 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D LI0493 glnS; Glutamyl-and glutaminyl-tRNA synthetases K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D LI0229 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LI1027 lysU; Lysyl-tRNA synthetase (class II) K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D LI0987 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LI1181 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D LI0704 asnS; Aspartyl/asparaginyl-tRNA synthetases K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D LI0212 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D LI0114 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D LI0608 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D LI0648 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D LI0986 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D LI0215 pheS; Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D LI0216 pheT; Phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D LI0022 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LI0020 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D LI0445 dtd; D-Tyr-tRNAtyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D LI0430 141aa long hypothetical histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D LI0357 pcm; Protein-L-isoaspartate carboxylmethyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D LI1062 truA; Pseudouridylate synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D LI1005 truB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D LI0265 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LI0889 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D LI0281 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D LI1072 thdF; predicted GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D LI0946 gidA; NAD/FAD-utilizing enzyme apparently involved in cell division K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D LI1069 rnpA; RNase P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D LI0199 Exoribonuclease R K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D LI0226 yjjK; ATPase components of ABC transporters with duplicated ATPase domains K06020 ettA; energy-dependent translational throttle protein EttA
D LI0300 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D LI0299 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D LI0343 codA; Cytosine/adenosine deaminases K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D LI0768 nifr3; tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D LI0821 miaB; 2-methylthioadenine synthetase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D LI0308 2-methylthioadenine synthetase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D LI0848 gidA; NAD/FAD-utilizing enzyme apparently involved in cell division K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D LI0220 trmD; tRNA-(guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D LI0355 rRNA methylases K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D LI1126 RNA methyltransferase, TrmH family, group 2, putative K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D LI0844 tRNA and rRNA cytosine-C5-methylases K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D LI0203 trmU; predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D LI0658 trmU; predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D LI0789 queA; S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D LI0800 Conserved hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D LI0258 F0F1-type ATP synthase, subunit c K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D LI0799 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D LI0089 folE; conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D LI0772 uncharacterized protein conserved in bacteria K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D LI0928 tgt; Queuine/archaeosine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D LI0409 predicted ATPase of the PP-loop superfamily implicated in cell cycle control K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D LI0388 Inactive homolog of metal-dependent proteases, putative molecular chaperone K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D LI0368 ygjD; Metal-dependent proteases with possible chaperone activity K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D LI1004 predicted ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D LI0594 rnb; Exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D LI1006 pnpA; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:lip03012]
D LI0535 infB; translation initiation factor 2 (IF-2; GTPase) K02519 infB; translation initiation factor IF-2
D LI0213 translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D LI0356 ATPase components of ABC transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D LI0378 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D LI0935 tufA; GTPases-translation elongation factors K02358 tuf; elongation factor Tu
D LI0944 fusA; translation elongation factors (GTPases) K02355 fusA; elongation factor G
D LI0884 selB; Selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D LI0002 Protein chain release factor A K02835 prfA; peptide chain release factor 1
D LI0383 rrf; Ribosome recycling factor K02838 frr; ribosome recycling factor
D LI0626 similar to Escherichia coli possible protoporphyrinogen oxidase (hemK) K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D LI0738 Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D LI0067 translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) K02356 efp; elongation factor P
D LI0893 Protein chain release factor B K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:lip03110]
D LI0618 ATPases with chaperone activity, ATP-binding subunit K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D LI0126 clpB; ATPases with chaperone activity, ATP-binding subunit K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D LI0795 clpX; ATP-dependent protease Clp, ATPase subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D LI0334 hslU; ATP-dependent protease HslVU (ClpYQ), ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D LI0912 dnaK; Molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D LI0625 GroEL/HSP60 homolog K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LI0685 dnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D LI0124 cbpA; DnaJ-class molecular chaperone K05516 cbpA; curved DNA-binding protein
D LI1048 grpE; Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D LI0624 GroES/HSP10 homolog K04078 groES; chaperonin GroES
D LI0346 htrA; trypsin domain/PDZ domain protein K04771 degP; serine protease Do [EC:3.4.21.107]
D LI0188 ftsH; ATP-dependent Zn proteases K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D LI1057 atpA; F0F1-type ATP synthase, subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D LI0690 hypothetical protein K07803 zraP; zinc resistance-associated protein
D LI0246 hypA; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D LI0245 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D LI0166 ppiB; Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D LI0167 Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D LI1114 Parvulin-like peptidyl-prolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D LI0303 ppi; Parvulin-like peptidyl-prolyl isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D LI0367 trxA; Thiol-disulfide isomerase and thioredoxins K03671 TXN; thioredoxin
C 04131 Membrane trafficking [BR:lip04131]
D LI1121 ndk; nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D LI0764 gapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LI1119 gapB; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LI1095 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system
C 03051 Proteasome
C 03032 DNA replication proteins [BR:lip03032]
D LI0756 rnh; Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D LI0389 Modification methylase BepI (Cytosine-specific methyltransferase BepI) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D LI0431 himA; Bacterial nucleoid DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D LI0894 himD; Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta
D LI0787 dnaA; ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D LI0001 dnaA; ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D LI0354 recQ; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D LIC081 recQ; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D LI0518 dnaG; DNA primase (bacterial type) K02316 dnaG; DNA primase [EC:2.7.7.101]
D LI0492 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI0257 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D LI0786 dnaN; DNA polymerase sliding clamp subunit (PCNA homolog) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LI0150 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LI0011 polB; DNA polymerase I-3'-5' exonuclease and polymerase domains K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D LI0916 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LI0222 rplS; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D LI0242 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D LI0652 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D LI0784 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D LI0785 gyrB; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D LI0654 topA; Zn-finger domain associated with topoisomerase type I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:lip03036]
D LI0389 Modification methylase BepI (Cytosine-specific methyltransferase BepI) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D LI0571 rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D LI0431 himA; Bacterial nucleoid DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D LI0894 himD; Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta
D LI0124 cbpA; DnaJ-class molecular chaperone K05516 cbpA; curved DNA-binding protein
D LI0125 hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D LI0787 dnaA; ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D LI0001 dnaA; ATPase involved in DNA replication initiation K02313 dnaA; chromosomal replication initiator protein
D LI1108 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D LI0372 hypothetical protein K05589 ftsB; cell division protein FtsB
D LI1098 ftsI; cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D LI0066 ftsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D LI1107 ftsQ; cell division septal protein K03589 ftsQ; cell division protein FtsQ
D LI1103 spoVE; Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D LI1109 ftsZ; cell division GTPase K03531 ftsZ; cell division protein FtsZ
D LI1023 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D LI0993 acrA; probable multidrug efflux membrane permease K03585 acrA; membrane fusion protein, multidrug efflux system
D LI0392 mreB; Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D LI1135 mreB; Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D LI0393 mreC; cell shape-determining protein K03570 mreC; rod shape-determining protein MreC
D LI0396 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D LI0814 soj; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LIB024 parA; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LI1140 soj; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LIA029 chromosome-partitioning ATPase K03496 parA; chromosome partitioning protein
D LIC063 parA; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LI0815 spo0J; predicted transcriptional regulators K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D LI0946 gidA; NAD/FAD-utilizing enzyme apparently involved in cell division K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D LI0432 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D LI0848 gidA; NAD/FAD-utilizing enzyme apparently involved in cell division K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D LIC001 similar to integrase/recombinase K04763 xerD; integrase/recombinase XerD
D LI0239 site-specific recombinase K04763 xerD; integrase/recombinase XerD
D LI0374 ATPases involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D LI0068 predicted GTPase K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:lip03400]
D LI0023 ogt; O-6-alkylguanine-DNA/cysteine-protein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D LI0165 mutY; A/G-specific DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D LI0778 nth; endonuclease III, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D LI0579 mutT; NTP pyrophosphohydrolases including oxidative damage repair enzymes K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LI0940 yqiE; ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D LI0088 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D LI0637 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D LI0839 xthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D LI0313 recJ; Single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D LI0242 lig; NAD-dependent DNA ligase (contains BRCT domain type II) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D LI1177 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D LI0241 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D LI0701 uvrC; Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D LI0672 pcrA; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D LI0905 rpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D LI0904 rpoB; DNA-directed RNA polymerase, beta subunit/140 kD subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D LI0982 rpoA; DNA-directed RNA polymerase, alpha subunit/40 kD subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D LI0305 transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D LI0236 mutS; Mismatch repair ATPase (MutS family) K03555 mutS; DNA mismatch repair protein MutS
D LI0628 mutL; DNA mismatch repair enzyme (predicted ATPase) K03572 mutL; DNA mismatch repair protein MutL
D LI0405 xseA; Exonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D LI0257 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D LI0786 dnaN; DNA polymerase sliding clamp subunit (PCNA homolog) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D LI0150 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D LI0011 polB; DNA polymerase I-3'-5' exonuclease and polymerase domains K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D LI0916 dnaX; DNA polymerase III, gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D LI0492 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI0652 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D LI0287 recD; ATP-dependent exoDNAse (exonuclease V), alpha subunit-helicase superfamily I member K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D LI1182 recA; RecA protein (Recombinase A) K03553 recA; recombination protein RecA
D LI1186 ruvA; Holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
D LI1187 ruvB; Holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D LI0268 ruvC; Holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D LI0194 priA; Primosomal protein N' (replication factor Y)-superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D LI0585 DNA repair exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D LI0616 radA; predicted ATP-dependent serine protease K04485 radA; DNA repair protein RadA/Sms
D LI0301 recO; hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
D LI0918 recR; Recombinational DNA repair protein (RecF pathway) ref|ZP_00131299.1| 353: Recombinational DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
D LI0249 recN; ATPase involved in DNA repair K03631 recN; DNA repair protein RecN (Recombination protein N)
D LI0253 hypothetical protein K03554 rdgC; recombination associated protein RdgC
D LI0784 gyrA; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D LI0785 gyrB; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D LI0654 topA; Zn-finger domain associated with topoisomerase type I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D LI0431 himA; Bacterial nucleoid DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D LI0894 himD; Bacterial nucleoid DNA-binding protein K05788 ihfB; integration host factor subunit beta
D LI0476 nrdA; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D LI0477 nrdB; Ribonucleotide reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D LI0536 mgpa; Exopolyphosphatase-related proteins K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:lip03029]
D LI0535 infB; translation initiation factor 2 (IF-2; GTPase) K02519 infB; translation initiation factor IF-2
D LI0213 translation initiation factor 3 (IF-3) K02520 infC; translation initiation factor IF-3
D LI0378 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D LI0935 tufA; GTPases-translation elongation factors K02358 tuf; elongation factor Tu
D LI0944 fusA; translation elongation factors (GTPases) K02355 fusA; elongation factor G
D LI0644 GTPase K03595 era; GTPase
D LI0022 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D LI0152 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D LI0987 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D LI0229 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D LI0885 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D LI1007 gatB; Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D LI0886 Glutamyl-tRNA (Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D LI0492 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D LI1024 Outer membrane protein/protective antigen OMA87 K07277 SAM50; outer membrane protein insertion porin family
D LI0912 dnaK; Molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D LI1048 grpE; Molecular chaperone GrpE (heat shock protein) K03687 GRPE; molecular chaperone GrpE
D LI0625 GroEL/HSP60 homolog K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LI0624 GroES/HSP10 homolog K04078 groES; chaperonin GroES
D LI0685 dnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain K03686 dnaJ; molecular chaperone DnaJ
D LI0265 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D LI0374 ATPases involved in chromosome partitioning K03593 mrp; ATP-binding protein involved in chromosome partitioning
D LI1070 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:lip02000]
D LI0869 ABC-type multidrug transport system, ATPase and permease components K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D LI0832 potD; Spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D LI0831 potC; ABC-type spermidine/putrescine transport system, permease component II K11070 potC; spermidine/putrescine transport system permease protein
D LI0830 potB; ABC-type spermidine/putrescine transport system, permease component I K11071 potB; spermidine/putrescine transport system permease protein
D LI0829 potA; ABC-type spermidine/putrescine transport systems, ATPase components K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D LI0058 thiamine biosynthesis protein, putative K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D LI0056 nitrate ABC transporter, permease protein (nrtB-1) K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D LI0057 nitrate ABC transporter, ATP-binding protein (nrtC-1) K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D LI0077 ugpB; probable extracellular solute-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D LI0078 ugpA; inner membrane component of binding-protein-dependent transport system K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D LI0079 inner membrane component of binding-protein-dependent transport system K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D LI0076 sugar ABC transporter, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D LI0233 ABC-type transport system involved in resistance to organic solvents, periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D LI1045 pqiB; Paraquat-inducible protein B K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D LI0231 ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D LI1047 ttg2B; ABC-type transport system involved in resistance to organic solvents, permease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D LI0232 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D LI1046 ABC-type transport system involved in resistance to organic solvents, ATPase component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D LI0234 ABC-type transport system involved in resistance to organic solvents, auxiliary component K07323 mlaC; phospholipid transport system substrate-binding protein
D LI1028 Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D LI1029 pstC; phosphate transporter permease PstC K02037 pstC; phosphate transport system permease protein
D LI1030 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D LI1031 pstB; Phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D LI0754 glnH; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K10036 glnH; glutamine transport system substrate-binding protein
D LI0753 glnP; ABC-type amino acid transport system, permease component K10037 glnP; glutamine transport system permease protein
D LI0496 branched chain amino acid ABC transporter, periplasmic amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D LI0339 ABC-type branched-chain amino acid transport systems, periplasmic component K01999 livK; branched-chain amino acid transport system substrate-binding protein
D LI0497 livH; branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D LI0338 livH; branched chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D LI0337 livM; branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D LI0498 livM; branched chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D LI0499 livG; branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D LI0336 livG; branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D LI0335 livF; branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D LI0500 livF; branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D LI0418 hypothetical protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D LI0416 probable permease of ABC transporter K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D LI0417 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D LI0716 gln; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D LI0129 amino acid ABC transporter, periplasmic amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D LI0733 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D LI0717 glnP; ABC-type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein
D LI0719 ABC-type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein
D LI0128 glnP; ABC-type amino acid transport system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein
D LI1129 glnQ; ABC-type polar amino acid transport system, ATPase component K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D LI0127 glnQ; ABC-type polar amino acid transport system, ATPase component K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D LI0718 glnQ; ABC-type polar amino acid transport system, ATPase component K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D LI0169 oppA; ABC-type dipeptide transport system, periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D LI0251 oppB; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02033 ABC.PE.P; peptide/nickel transport system permease protein
D LI0250 oppC; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D LI1081 oppD; oligopeptide ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein
D LI0988 dppF; oligopeptide ABC transporter (ATP-binding protein) K02032 ddpF; peptide/nickel transport system ATP-binding protein
D LI0862 NA K02008 cbiQ; cobalt/nickel transport system permease protein
D LI0863 cbiM; CBIM protein K02007 cbiM; cobalt/nickel transport system permease protein
D LI0861 cbiO; ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D LI0864 NA K16915 cbiL; nickel transport protein
D LI1180 bioY; uncharacterized conserved protein K03523 bioY; biotin transport system substrate-specific component
D LI1178 ABC-type cobalt transport system, permease component CbiQ and related transporters K16783 bioN; biotin transport system permease protein
D LI1179 cbiO; ABC-type cobalt transport system, ATPase component K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D LIC005 ABC transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D LI0468 rfbB; dTDP-D-glucose 4,6-dehydratase K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D LI0882 predicted permeases K07091 lptF; lipopolysaccharide export system permease protein
D LI0881 predicted permeases K11720 lptG; lipopolysaccharide export system permease protein
D LI0456 ABC-type (unclassified) transport system, ATPase component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D LI1026 lolC; ABC-type transport system, involved in lipoprotein release, permease component K09808 lolC_E; lipoprotein-releasing system permease protein
D LI1025 lolD; ABC-type transport system, involved in lipoprotein release, permease component K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D LI0953 ccmC; ABC-type transport system involved in cytochrome c biogenesis, permease component K02195 ccmC; heme exporter protein C
D LI0954 ABC-type transport system involved in cytochrome c biogenesis, permease component K02194 ccmB; heme exporter protein B
D LI0955 ccmA_ccmB; ABC-type multidrug transport system, ATPase component K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D LI0508 Multidrug resistance protein norM K26939 norM; MATE family, multidrug efflux pump
D LI1127 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D LI0897 araJ; Putative transmembrane efflux protein K08156 araJ; MFS transporter, DHA1 family, arabinose polymer utilization protein
D LI1173 3264: Small-conductance mechanosensitive channel K05802 mscK; potassium-dependent mechanosensitive channel
D LI0359 mgtE; Mg/Co/Ni transporter MgtE (contains CBS domain) K06213 mgtE; magnesium transporter
D LI0482 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0486 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0483 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
D LI0487 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
D LI0695 tolQ; Biopolymer transport proteins K03562 tolQ; biopolymer transport protein TolQ
D LI0694 exbD; Biopolymer transport protein K03560 tolR; biopolymer transport protein TolR
D LI0097 corA; CorA, CorA-like Mg2+ transporter protein K03284 corA; magnesium transporter
D LI0958 yhdP; Hemolysins and related proteins containing CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D LI0902 outer membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D LI0045 NA K12687 flu; antigen 43
D LIB004 Asn/Thr/Ser/Val rich protein K12687 flu; antigen 43
D LI0995 oprM; outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D LI1024 Outer membrane protein/protective antigen OMA87 K07277 SAM50; outer membrane protein insertion porin family
D LI0365 DNA uptake lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D LI0688 Outer membrane protein K07278 tamA; translocation and assembly module TamA
D LI0689 grsT; uncharacterized protein conserved in bacteria K09800 tamB; translocation and assembly module TamB
D LI0455 uncharacterized protein conserved in bacteria K09774 lptA; lipopolysaccharide export system protein LptA
D LI0454 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D LI0033 ostA; Organic solvent tolerance protein OstA K04744 lptD; LPS-assembly protein
D LI0941 corC; Putative Mg2+ and Co2+ transporter CorC K06189 corC; hemolysin (HlyC) family protein
D LI0262 Amino acid transporters K20265 gadC; glutamate:GABA antiporter
D LI0636 conserved membrane protein K07238 TC.ZIP; zinc transporter, ZIP family
D LI0994 acrB; acriflavin resistance protein D K18138 acrB; multidrug efflux pump
D LI0924 qacE; membrane transporters of cations and cationic drugs K11742 mdtI; spermidine export protein MdtI
D LI0925 qacE; membrane transporters of cations and cationic drugs K11743 mdtJ; spermidine export protein MdtJ
D LIC101 membrane protein, putative K03298 TC.DME; drug/metabolite transporter, DME family
D LI0599 panF; Na+/panthothenate symporter K14392 panF; sodium/pantothenate symporter
D LI0773 kefC; Kef-type K+ transport systems, membrane components K26735 KEA4_5_6; K+:H+ antiporter
D LI0775 trkH; Trk-type K+ transport systems, membrane components K03498 trkH; trk/ktr system potassium uptake protein
D LI0774 trkA; K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D LI0601 voltage-gated chloride channel family protein K03281 clcA; chloride channel protein, CIC family
D LI0752 Sulfate transporter family protein K03321 TC.SULP; sulfate permease, SulP family
D LI0865 mviN; uncharacterized membrane protein, putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D LI0927 mviN; uncharacterized membrane protein, putative virulence factor K03980 murJ; putative peptidoglycan lipid II flippase
D LI0107 predicted permeases K13936 mdcF; malonate transporter and related proteins
D LIC077 conserved hypothetical bacterial membrane protein K09125 yhhQ; queuosine precursor transporter
D LI1103 spoVE; Bacterial cell division membrane protein K03588 ftsW; cell division protein FtsW
D LI0691 pal; Outer membrane protein and related peptidoglycan-associated (lipo)proteins K03640 pal; peptidoglycan-associated lipoprotein
D LI0693 membrane protein involved in colicin uptake K03646 tolA; colicin import membrane protein
D LI0692 tolB; Periplasmic component of the Tol biopolymer transport system K03641 tolB; TolB protein
D LI0501 ppa; Inorganic pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D LI0122 Cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D LI0993 acrA; probable multidrug efflux membrane permease K03585 acrA; membrane fusion protein, multidrug efflux system
D LI1082 feoA; Fe2+ transport system protein A K04758 feoA; ferrous iron transport protein A
D LI1083 feoB; Fe2+ transport system protein B K04759 feoB; ferrous iron transport protein B
D LI0956 ccmF; Cytochrome c biogenesis factor K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:lip02044]
D LI0363 predicted integral membrane protein K02221 yggT; YggT family protein
D LI0866 predicted membrane metal-binding protein K02238 comEC; competence protein ComEC
D LI1160 YscC; putative type III secretion protein YscC K03219 yscC; type III secretion protein C
D LI1161 NA K03220 yscD; type III secretion protein D
D LI0543 nolT; LscJ K03222 yscJ; type III secretion protein J
D LI1163 YscJ; putative type III secretion protein K03222 yscJ; type III secretion protein J
D LI0541 sctL; type III secretion protein, YopL family putative type III secretion protein K03223 yscL; type III secretion protein L
D LI1164 YscL; putative type III secretion protein K03223 yscL; type III secretion protein L
D LI0540 sctN; Type III secretion component protein SctN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D LI0539 hypothetical protein K04056 yscO; type III secretion protein O
D LI0538 putative translocation protein in type III secretion K03225 yscQ; type III secretion protein Q
D LI1166 putative translocation protein in type III secretion K03225 yscQ; type III secretion protein Q
D LI0537 SctR; translocation protein in type III secretion K03226 yscR; type III secretion protein R
D LI0549 yscS; probable translocation protein in type III secretion K03227 yscS; type III secretion protein S
D LI0550 yscT; Type III secretion component protein SctT K03228 yscT; type III secretion protein T
D LI0551 yscU; translocation protein in type III secretion K03229 yscU; type III secretion protein U
D LI0548 yscV; putative type III secretion pore protein K03230 yscV; type III secretion protein V
D LI1153 putative outer protein N K04058 yscW; type III secretion protein W
D LI1152 NA K04059 yscX; type III secretion protein X
D LI0530 Flagellar biosynthesis pathway, component FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D LI0531 flhB; Flagellar biosynthesis pathway, component FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D LI0857 fliF; Flagellar biosynthesis/type III secretory pathway lipoprotein K02409 fliF; flagellar M-ring protein FliF
D LI0854 fliI; Flagellar biosynthesis/type III secretory pathway ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D LI0641 fliN; Flagellar motor switch/type III secretory pathway protein K02417 fliN; flagellar motor switch protein FliN
D LI0640 Flagellar biogenesis protein K02418 fliO; flagellar protein FliO/FliZ
D LI0639 fliP; Flagellar biosynthesis pathway, component FliP K02419 fliP; flagellar biosynthesis protein FliP
D LI0532 fliR; Flagellar biosynthesis pathway, component FliR K02421 fliR; flagellar biosynthesis protein FliR
D LI0045 NA K12687 flu; antigen 43
D LIB004 Asn/Thr/Ser/Val rich protein K12687 flu; antigen 43
D LI0630 secA; Preprotein translocase subunit SecA (ATPase, RNA helicase) K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D LI0048 secD; Preprotein translocase subunit SecF K03072 secD; preprotein translocase subunit SecD
D LI0047 secF; Preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D LI1131 secG; Preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D LI0977 secY; Preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D LI0575 Signal renition particle GTPase K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D LI0323 Signal renition particle GTPase K03110 ftsY; fused signal recognition particle receptor
D LI0049 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D LI1070 yidC; Preprotein translocase subunit YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D LI0589 Sec-independent protein secretion pathway components K03117 tatB; sec-independent protein translocase protein TatB
D LI0588 tatC; Sec-independent protein secretion pathway component TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:lip02042]
D LI0958 yhdP; Hemolysins and related proteins containing CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:lip02022]
D LI0260 ntrY; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D LI0687 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D LI1078 HydH; Signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D LI1079 hydG; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K07713 zraR; two-component system, NtrC family, response regulator HydG
D LI0877 atoC; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K02481 flgR; two-component system, NtrC family, response regulator
D LI1144 cheA_2; Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D LI0526 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1142 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1137 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D LI0729 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D LI1117 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
C 02035 Bacterial motility proteins [BR:lip02035]
D LI1144 cheA_2; Chemotaxis protein histidine kinase and related kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D LI1170 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D LI1141 cheW; Chemotaxis signal transduction protein K03408 cheW; purine-binding chemotaxis protein CheW
D LI1139 cheR; Methylase of chemotaxis methyl-accepting proteins K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D LI1137 cheB; Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D LI0526 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1142 cheY; CheY-like receiver K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D LI1054 cheZ; Chemotaxis protein K03414 cheZ; chemotaxis protein CheZ
D LI0729 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D LI1117 cheV; Chemotaxis signal transduction protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D LI0843 tsr; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D LIC103 pilJ; Methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D LI0854 fliI; Flagellar biosynthesis/type III secretory pathway ATPase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D LI1060 Flagellar biosynthesis chaperone K02413 fliJ; flagellar protein FliJ
D LI0640 Flagellar biogenesis protein K02418 fliO; flagellar protein FliO/FliZ
D LI0639 fliP; Flagellar biosynthesis pathway, component FliP K02419 fliP; flagellar biosynthesis protein FliP
D LI0532 fliR; Flagellar biosynthesis pathway, component FliR K02421 fliR; flagellar biosynthesis protein FliR
D LI0530 Flagellar biosynthesis pathway, component FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D LI0531 flhB; Flagellar biosynthesis pathway, component FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D LI0856 fliG; Flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D LI0027 fliM; Flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D LI0641 fliN; Flagellar motor switch/type III secretory pathway protein K02417 fliN; flagellar motor switch protein FliN
D LI0857 fliF; Flagellar biosynthesis/type III secretory pathway lipoprotein K02409 fliF; flagellar M-ring protein FliF
D LI0744 flgI; Flagellar basal-body P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D LI0742 hypothetical protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D LI0743 flgG; Flagellar basal body L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D LI0642 fliL; Flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D LI0525 Flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D LI0858 fliE; Flagellar hook-basal body protein K02408 fliE; flagellar hook-basal body complex protein FliE
D LI0568 Flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D LI0860 flgB; Flagellar basal body protein K02387 flgB; flagellar basal-body rod protein FlgB
D LI0859 flgC; Flagellar basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D LI0567 Flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D LI0740 flgF; Flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D LI0741 flgG; Flagellar basal body L-ring protein K02392 flgG; flagellar basal-body rod protein FlgG
D LI0745 flgJ; membrane proteins related to metalloendopeptidases K02395 flgJ; peptidoglycan hydrolase FlgJ
D LI0566 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D LI0348 flgE; Flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D LI0747 flgK; Flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D LI0748 flgL; Flagellin and related hook-associated proteins K02397 flgL; flagellar hook-associated protein 3 FlgL
D LI0710 fliC; Flagellin and related hook-associated proteins K02406 fliC; flagellin
D LI0570 fliC; Flagellin and related hook-associated proteins K02406 fliC; flagellin
D LI0211 fliD; Flagellar capping protein K02407 fliD; flagellar hook-associated protein 2
D LI0210 fliS; Flagellin-specific chaperone FliS K02422 fliS; flagellar secretion chaperone FliS
D LI0482 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0486 motA; Flagellar motor component K02556 motA; chemotaxis protein MotA
D LI0483 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
D LI0487 motB; Flagellar motor protein K02557 motB; chemotaxis protein MotB
D LI1092 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D LI0749 uncharacterized protein conserved in bacteria K13626 fliW; flagellar assembly factor FliW
D LI0633 flgM; hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D LI0529 flhF; Flagellar GTP-binding protein K02404 flhF; flagellar biosynthesis protein FlhF
D LI0528 fleN; ATPases involved in chromosome partitioning K04562 flhG; flagellar biosynthesis protein FlhG
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:lip04812]
D LI0392 mreB; Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D LI1135 mreB; Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D LI1109 ftsZ; cell division GTPase K03531 ftsZ; cell division protein FtsZ
D LI1108 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D LI0814 soj; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LIB024 parA; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LI1140 soj; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LIA029 chromosome-partitioning ATPase K03496 parA; chromosome partitioning protein
D LIC063 parA; ATPases involved in chromosome partitioning K03496 parA; chromosome partitioning protein
D LI0815 spo0J; predicted transcriptional regulators K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:lip04147]
D LI0091 eno; Enolase (2-phosphoglycerate dehydratase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D LI0764 gapA; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LI1119 gapB; Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D LI0464 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D LI1095 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D LI0625 GroEL/HSP60 homolog K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D LI0912 dnaK; Molecular chaperone dnaK K04043 dnaK; molecular chaperone DnaK
D LI0879 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D LI0591 guaB; IMP dehydrogenase/GMP reductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D LI0935 tufA; GTPases-translation elongation factors K02358 tuf; elongation factor Tu
D LI0430 141aa long hypothetical histidine triad nucleotide-binding protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D LI0670 ahcY; S-adenosylhomocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D LI0317 Adenylate kinase and related kinases K00939 adk; adenylate kinase [EC:2.7.4.3]
D LI0657 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D LI0656 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D LI0369 fbp; Fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D LI0205 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D LI0671 serA; phosphoglycerate dehydrogenase and related dehydrogenases K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D LI0200 purH; AICAR transformylase/IMP cyclohydrolase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D LI1132 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:lip02048]
D LI0652 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D LI0389 Modification methylase BepI (Cytosine-specific methyltransferase BepI) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D LIA025 Plasmid stabilization system protein K19092 parE1_3_4; toxin ParE1/3/4
D LI1109 ftsZ; cell division GTPase K03531 ftsZ; cell division protein FtsZ
D LI0392 mreB; Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D LI1135 mreB; Actin-like ATPase involved in cell morphogenesis K03569 mreB; rod shape-determining protein MreB and related proteins
D LI0462 gltX; Glutamyl-and glutaminyl-tRNA synthetases K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D LI0265 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:lip04090]
C 01504 Antimicrobial resistance genes [BR:lip01504]
D LI0179 tetW; ribosomal protection tetracycline resistance protein K18220 tetM; ribosomal protection tetracycline resistance protein
D LI0292 Svh K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D LI0306 predicted integral membrane protein K14205 mprF; phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
D LI0993 acrA; probable multidrug efflux membrane permease K03585 acrA; membrane fusion protein, multidrug efflux system
D LI0994 acrB; acriflavin resistance protein D K18138 acrB; multidrug efflux pump
D LI0995 oprM; outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:lip00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:lip03100]
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A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D LI0119 msrA; peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D LI0120 Conserved domain frequently associated with peptide methionine sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D LIC102 yhjA; putative cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D LI0596 tpx; Peroxiredoxin K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D LI0289 Pirin-related protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D LI0273 Desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2]
D LI0375 pcm; Protein-L-isoaspartate carboxylmethyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D LI0123 lacA; maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D LI0592 maa; maltose transacetylase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D LI0892 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D LI0684 Acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D LI0619 aat; Leu/Phe-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D LI0909 lgt; Prolipoprotein diacylglyceryltransferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D LI0190 uncharacterized conserved protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D LI0724 predicted thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D LI1050 predicted metal-dependent phosphoesterases (PHP family) K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D LI0181 endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D LI0898 tatD; Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D LI0038 putative exported nuclease K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D LI0767 def; N-formylmethionyl-tRNA deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D LI0197 similar to endo-1,4-beta-xylanase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D LIC078 protein synthesis inhibitor, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D LI0750 uncharacterized conserved protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D LI0598 zntA; cation-transporting ATPase, P-type K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D LI0880 sfsA; DNA-binding protein, stimulates sugar fermentation K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D LI0266 iscU; NifU homolog involved in Fe-S cluster formation K13819 K13819; NifU-like protein
D LI0901 dsr; Sulfite reductase, dissimilatory-type gamma subunit K23077 dsrC; dissimilatory sulfite reductase related protein
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D LI0643 predicted enzyme with a TIM-barrel fold K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D LIC015 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
D LIA022 Glycosyltransferases involved in cell wall biogenesis K22907 ppgS; polyprenyl-phospho-N-acetylgalactosaminyl synthase
C 99987 Cofactor metabolism
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
D LI0284 predicted exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D LI0617 yljA; uncharacterized conserved protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D LI0793 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) K03545 tig; trigger factor
D LI0225 smpB; tmRNA-binding protein K03664 smpB; SsrA-binding protein
D LI0908 hypD; Hydrogenase maturation factor K04654 hypD; hydrogenase expression/formation protein HypD
D LI0631 hypE; Hydrogenase maturation factor K04655 hypE; hydrogenase expression/formation protein HypE
D LI0707 hypF; Hydrogenase maturation factor K04656 hypF; hydrogenase maturation protein HypF
D LI0751 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D LI0149 radC; DNA repair proteins K03630 radC; DNA repair protein RadC
D LI1124 nth; endonuclease III, putative K07457 K07457; endonuclease III related protein
D LI0223 predicted endonuclease distantly related to archaeal Holliday junction resolvase K07460 yraN; putative endonuclease
D LI0110 smf; predicted Rossmann fold nucleotide-binding protein involved in DNA uptake K04096 smf; DNA processing protein
D LI0014 ATPase related to the helicase subunit of the Holliday junction resolvase K07478 ycaJ; putative ATPase
C 99979 Viral proteins
C 99998 Others
D LI0917 uncharacterized protein conserved in bacteria K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D LI0007 tlc; nucleotide transport protein K03301 TC.AAA; ATP:ADP antiporter, AAA family
D LIC090 proton/peptide symporter family protein K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D LI0811 pit; Phosphate/sulphate permeases K03306 TC.PIT; inorganic phosphate transporter, PiT family
D LI0428 putP; probable sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D LI0196 putative transport protein K07085 K07085; putative transport protein
C 99978 Cell growth
D LI0135 uncharacterized protein conserved in bacteria K06320 cgeB; spore maturation protein CgeB
D LI0318 uncharacterized protein conserved in bacteria K06320 cgeB; spore maturation protein CgeB
D LI1071 jag; predicted RNA-binding protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D LI0145 typA_bipA; GTP-binding protein lepA K06207 typA; GTP-binding protein
C 99992 Structural proteins
D LI0065 Outer membrane lipoprotein-sorting protein K03634 lolA; outer membrane lipoprotein carrier protein
D LI0235 Surface lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D LI0147 Outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D LI1022 Outer membrane protein K06142 hlpA; outer membrane protein
D LI0050 uncharacterized protein involved in outer membrane biogenesis K07289 asmA; AsmA protein
D LI0358 asmA protein K07289 asmA; AsmA protein
D LI0957 b2503; hypothetical protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D LI0302 uncharacterized protein conserved in bacteria K15539 rodZ; cytoskeleton protein RodZ
D LIA021 NA K09153 K09153; small membrane protein
C 99994 Others
D LI0510 terC; membrane protein TerC, possibly involved in tellurium resistance K05794 terC; tellurite resistance protein TerC
D LI0779 cutA; divalent cation tolerance protein, probable K03926 cutA; periplasmic divalent cation tolerance protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D LI0711 uncharacterized membrane protein, required for colicin V production K03558 cvpA; membrane protein required for colicin V production
D LI0734 NA K07038 K07038; inner membrane protein
D LI0082 unknown conserved protein K07038 K07038; inner membrane protein
D LI0705 DedA protein family K03975 dedA; membrane-associated protein
C 99997 Function unknown
D LIB005 hypothetical protein BSU05780 K06885 K06885; uncharacterized protein
D LI0810 Integral membrane protein, interacts with FtsH K06890 K06890; uncharacterized protein
D LI0315 predicted CoA-binding protein K06929 K06929; uncharacterized protein
D LI0574 predicted RNA-binding protein (contains KH domain) K06960 K06960; uncharacterized protein
D LI0081 predicted nucleoside-diphosphate sugar epimerase K07071 K07071; uncharacterized protein
D LI0911 conserved hypothetical protein K07090 K07090; uncharacterized protein
D LI0827 hypothetical lipoprotein K07121 K07121; uncharacterized protein
D LI0391 predicted Fe-S oxidoreductase K07139 K07139; uncharacterized protein
D LI0448 Zn-ribbon protein, possibly nucleic acid-binding K07164 K07164; uncharacterized protein
D LI0519 uncharacterized conserved protein K09117 K09117; uncharacterized protein
D LI0872 uncharacterized conserved protein K09157 K09157; uncharacterized protein
D LI0765 conserved hypothetical protein K09729 K09729; uncharacterized protein
D LI0134 predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain K09749 K09749; uncharacterized protein
D LI0171 NA K09793 K09793; uncharacterized protein
D LI0480 esterase MesA K09795 K09795; uncharacterized protein
D LI1122 uncharacterized protein conserved in bacteria K09798 K09798; uncharacterized protein
D LI1044 uncharacterized protein conserved in bacteria K09857 K09857; uncharacterized protein
D LI1128 uncharacterized conserved protein K01163 K01163; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 7, 2024