+F Repair protein KO #

  DNA Repair and Recombination Proteins - Listeria ivanovii subsp. ivanovii PAM 55

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D LIV_0941 Putative methylated-DNA-protein-cystein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LIV_0518 Putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LIV_0317 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LIV_1164 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LIV_0870 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LIV_1664 Putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LIV_1873 nth; Putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E LIV_0126 Putative ATP dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D LIV_1587 Putative MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_1196 Putative 8-oxo-dGTPase (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_2279 Hypothetical protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_1644 Some similarity to hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_1667 Putative deoxyuridine triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D LIV_0941 Putative methylated-DNA-protein-cystein methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LIV_0067 Putative Ada protein (O6-methylguanine-DNA methyltransferase) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LIV_2227 Putative methylphosphotriester-DNA alkyltransferase and transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D LIV_2226 Putative O6-methylguanine-DNA methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D LIV_0518 Putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E LIV_0317 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LIV_1164 Putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E LIV_0870 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E LIV_1664 Putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E LIV_1605 Putative dna-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E LIV_1520 mutM; Putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E LIV_1873 nth; Putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E LIV_1759 Putative 3'-exo-deoxyribonuclease exoA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E LIV_1407 Putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E LIV_1481 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E LIV_1735 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E LIV_1521 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E LIV_2398 uvrA; Putative excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A E LIV_2399 uvrB; Putative excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B E LIV_1171 uvrC; Putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E LIV_1736 pcrA; Putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIV_1521 polA; Putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E LIV_1735 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F LIV_0237 rpoB; Putative RNA polymerase (beta subunit) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F LIV_0238 rpoC; Putative RNA polymerase (beta' subunit) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F LIV_2517 rpoA; Putative RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F LIV_2473 Putative RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F LIV_1802 Hypothetical protein of unknown function K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F LIV_0184 mfd; Putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E LIV_1354 mutS; Putative DNA mismatch repair (recognition) K03555 mutS; DNA mismatch repair protein MutS E LIV_1169 Putative MutS protein (MutS2) K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E LIV_1355 mutL; Putative DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E LIV_1312 Putative exodeoxyribonuclease VII (large subunit) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E LIV_1313 Putative exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E LIV_1530 dnaE; Putative DNA polymerase III (alpha subunit) DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E LIV_1271 polC; Putative DNA polymerase III (alpha subunit) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E LIV_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E LIV_1437 Putative unknown protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E LIV_0137 Putative DNA polymerase III (delta' subunit) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E LIV_2658 dnaX; Putative DNA polymerase III (gamma and tau subunits) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E LIV_1735 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E LIV_1736 pcrA; Putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E LIV_0043 ssb; Putative single-strand binding protein (SSB) K03111 ssb; single-strand DNA-binding protein E LIV_2433 Putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E LIV_1465 Putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E LIV_1349 recA; Putative Recombination protein recA K03553 recA; recombination protein RecA E LIV_1489 ruvA; Putative Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E LIV_1488 ruvB; Putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E LIV_1800 priA; Putative primosomal replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E LIV_1611 Putative ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E LIV_1612 Putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E LIV_1349 recA; Putative Recombination protein recA K03553 recA; recombination protein RecA E LIV_0203 Putative DNA repair protein Sms K04485 radA; DNA repair protein RadA/Sms E LIV_0005 RecF; Putative RecF protein K03629 recF; DNA replication and repair protein RecF E LIV_1787 Putative ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E LIV_1481 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E LIV_1417 Putative RecO protein involved in DNA repair and homologous recombination K03584 recO; DNA repair protein RecO (recombination protein O) E LIV_2656 recR; Putative recombination protein recR K06187 recR; recombination protein RecR E LIV_1319 recN; Putative DNA repair and genetic recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E LIV_1868 recU; Putative DNA repair and homologous recombination protein K03700 recU; recombination protein U E LIV_1489 ruvA; Putative Holliday junction DNA helicase (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E LIV_1488 ruvB; Putative Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E LIV_2252 Putative ATP-dependent deoxyribonuclease (subunit A) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E LIV_2253 addB; Putative ATP-dependent deoxyribonuclease (subunit B) K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E LIV_0432 Putative unknown protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E LIV_1611 Putative ATP-dependent dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E LIV_1612 Putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F LIV_0007 gyrA; Putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F LIV_0006 gyrB; Putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F LIV_1228 topA; Putative DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F LIV_1914 hup; Putative non-specific DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F LIV_1481 Putative single-stranded-DNA-specific exonuclease (RecJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F LIV_1417 Putative RecO protein involved in DNA repair and homologous recombination K03584 recO; DNA repair protein RecO (recombination protein O) F LIV_2656 recR; Putative recombination protein recR K06187 recR; recombination protein RecR F LIV_1735 Putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F LIV_2709 Putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LIV_1922 recS; Putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F LIV_2398 uvrA; Putative excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A F LIV_2399 uvrB; Putative excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D LIV_1950 Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol IV)) K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D LIV_1349 recA; Putative Recombination protein recA K03553 recA; recombination protein RecA D LIV_1253 Putative SOS response regulator lexA,transcription repressor protein K01356 lexA; repressor LexA [EC:3.4.21.88] D LIV_1319 recN; Putative DNA repair and genetic recombination protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D LIV_0043 ssb; Putative single-strand binding protein (SSB) K03111 ssb; single-strand DNA-binding protein D LIV_2433 Putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D LIV_1669 Hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D LIV_1168 Putative DNA polymerase beta, to B. subtilis YshC protein K02347 polX; DNA polymerase (family X) C DNA helicases D LIV_1879 dinG; Putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D LIV_1587 Putative MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_1196 Putative 8-oxo-dGTPase (mutT) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_2279 Hypothetical protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_1644 Some similarity to hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LIV_1667 Putative deoxyuridine triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LIV_2145 Putative ribonucleoside-diphosphate reductase,subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D LIV_2144 Putative ribonucleoside-diphosphate reductase,subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D LIV_1531 Putative unknown protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024