+F Repair protein KO #

  DNA Repair and Recombination Proteins - Methylotuvimicrobium alcaliphilum

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MEALZ_0760 Methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MEALZ_0376 phr; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MEALZ_2632 Uracil-DNA glycosylase superfamily K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MEALZ_3964 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MEALZ_0419 nth; Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MEALZ_0462 Mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MEALZ_2782 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MEALZ_1119 conserved protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MEALZ_0131 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MEALZ_0760 Methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MEALZ_0376 phr; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MEALZ_2632 Uracil-DNA glycosylase superfamily K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MEALZ_3311 Putative phage SPO1 DNA polymerase-related protein, uracil-DNA glycosylase family K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MEALZ_3475 conserved protein of unknown function K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MEALZ_3474 Uracil-DNA glycosylase superfamily (fragment) K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MEALZ_3964 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MEALZ_1344 tag; DNA-3-methyladenine glycosylase I (3-methyladenine-DNA glycosylase I) (TAG I) (DNA-3-methyladenine glycosidase I) K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MEALZ_1612 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MEALZ_0419 nth; Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MEALZ_2631 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E MEALZ_1563 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E MEALZ_1634 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MEALZ_0386 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MEALZ_1480 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A E MEALZ_0889 uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B E MEALZ_3473 uvrC; UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C E MEALZ_2290 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MEALZ_0386 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] E MEALZ_1634 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MEALZ_3360 rpoB; DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MEALZ_3359 rpoC; DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (Transcriptase subunit beta') (RNA polymerase subunit beta') K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MEALZ_3328 rpoA; RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MEALZ_3550 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MEALZ_2217 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E MEALZ_1132 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E MEALZ_2036 DNA mismatch repair protein MutS domain protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E MEALZ_1568 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E MEALZ_2224 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E MEALZ_0395 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MEALZ_3089 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MEALZ_3120 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MEALZ_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MEALZ_0676 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E MEALZ_3403 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MEALZ_2021 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MEALZ_3032 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MEALZ_p0082 ycg4D; Ycg4D K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MEALZ_2406 dnaX; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MEALZ_1634 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MEALZ_2290 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MEALZ_1914 ssb; Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MEALZ_3620 Exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E MEALZ_3818 Exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E MEALZ_3618 recD; Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MEALZ_2847 recA; Protein RecA (Recombinase A) K03553 recA; recombination protein RecA E MEALZ_1035 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E MEALZ_1036 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MEALZ_1034 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MEALZ_0141 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E MEALZ_2224 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E MEALZ_2829 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MEALZ_2749 putative exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E MEALZ_2750 putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E MEALZ_2847 recA; Protein RecA (Recombinase A) K03553 recA; recombination protein RecA E MEALZ_3111 radA; DNA repair protein RadA (DNA repair protein Sms) K04485 radA; DNA repair protein RadA/Sms E MEALZ_0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E MEALZ_3553 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MEALZ_1563 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E MEALZ_0570 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) E MEALZ_2404 recR; Recombination protein RecR K06187 recR; recombination protein RecR E MEALZ_1875 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E MEALZ_1225 rdgC; Recombination-associated protein rdgC K03554 rdgC; recombination associated protein RdgC E MEALZ_1035 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E MEALZ_1036 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MEALZ_1034 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E MEALZ_1351 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E MEALZ_2157 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E MEALZ_3706 conserved protein of unknown function K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E MEALZ_2829 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E MEALZ_2749 putative exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E MEALZ_2750 putative exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E MEALZ_0278 putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MEALZ_2500 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MEALZ_0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MEALZ_3423 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MEALZ_3046 hupB; DNA-binding protein HU-beta (NS1) (HU-1) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MEALZ_1563 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F MEALZ_0570 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O) F MEALZ_2404 recR; Recombination protein RecR K06187 recR; recombination protein RecR F MEALZ_1634 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F MEALZ_2304 fis; DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F MEALZ_0901 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F MEALZ_2492 ihfB; Integration host factor subunit beta (IHF-beta) K05788 ihfB; integration host factor subunit beta E Supressor F MEALZ_2224 sbcB; Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F MEALZ_0606 conserved protein of unknown function K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MEALZ_2784 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F MEALZ_1480 uvrA; UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A F MEALZ_0889 uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B F MEALZ_1583 Histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MEALZ_1229 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MEALZ_1071 umuC; component of DNA polymerase V, subunit C K03502 umuC; DNA polymerase V D MEALZ_1072 umuD; component of DNA polymerase V, subunit D K03503 umuD; DNA polymerase V [EC:3.4.21.-] D MEALZ_1077 umuD; component of DNA polymerase V, subunit D K03503 umuD; DNA polymerase V [EC:3.4.21.-] D MEALZ_p0076 umuD; Protein umuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D MEALZ_2847 recA; Protein RecA (Recombinase A) K03553 recA; recombination protein RecA D MEALZ_1078 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D MEALZ_3562 Transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D MEALZ_1875 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D MEALZ_1914 ssb; Single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) K03111 ssb; single-strand DNA-binding protein D MEALZ_2846 Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MEALZ_3658 rep; ATP-dependent DNA helicase rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D MEALZ_0208 Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D MEALZ_p0079 Helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D MEALZ_3199 putative ATP-dependent helicase HI_0387 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MEALZ_0367 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MEALZ_0462 Mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MEALZ_2782 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MEALZ_1119 conserved protein of unknown function K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MEALZ_0131 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MEALZ_0302 Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (modular protein) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024