+F Repair protein KO #

  DNA Repair and Recombination Proteins - Mycobacterium avium subsp. paratuberculosis MAP4

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D MAP4_1378 methylated-DNA--protein-cysteinemethyl transferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MAP4_0718 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MAP4_0784 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MAP4_2450 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MAP4_3398 adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MAP4_3469 Endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E MAP4_3060 DNA helicase ErcC3 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D MAP4_4011 mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAP4_1197 mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAP4_2560 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAP4_0998 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D MAP4_1378 methylated-DNA--protein-cysteinemethyl transferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D MAP4_0718 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E MAP4_0784 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E MAP4_0529 putative uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MAP4_1307 Uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E MAP4_1380 ada regulatory protein alkA K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E MAP4_2450 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E MAP4_3398 adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E MAP4_1252 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E MAP4_2519 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MAP4_0808 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MAP4_2971 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E MAP4_1540 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E MAP4_0365 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E MAP4_3469 Endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E MAP4_4032 exodeoxyribonuclease III XthA K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E MAP4_4257 endonuclease IV End K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ D DNA ligase E MAP4_0746 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E MAP4_2525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E MAP4_2505 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E MAP4_2511 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E MAP4_2707 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E MAP4_0485 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAP4_0488 ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAP4_2967 ATP-dependent DNA helicase UvrD PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAP4_2525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E MAP4_0746 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F MAP4_4255 DNA-directed RNA polymerase beta chain RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F MAP4_4256 DNA-directed RNA polymerase beta chain RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F MAP4_4358 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F MAP4_2729 DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F MAP4_2872 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E MAP4_1130 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E MAP4_1129 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E MAP4_2594 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E MAP4_0002 DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E MAP4_1599 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E MAP4_3441 DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E MAP4_3557 DNA polymerase III epsilon subunit dnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MAP4_1898 Exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E MAP4_3548 DNA polymerase III subunits gamma tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E MAP4_0746 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E MAP4_0485 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAP4_0488 ATP-dependent DNA helicase II UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAP4_2967 ATP-dependent DNA helicase UvrD PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E MAP4_1527 hypothetical protein, single-strand DNA binding protein family K03111 ssb; single-strand DNA-binding protein E MAP4_3807 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E MAP4_4219 exonuclease V gamma chain RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E MAP4_4216 exodeoxyribonuclease V alpha chain RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E MAP4_0961 DNA recombination protein K03553 recA; recombination protein RecA E MAP4_2819 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MAP4_2818 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MAP4_2820 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E MAP4_2723 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E MAP4_0961 DNA recombination protein K03553 recA; recombination protein RecA E MAP4_3394 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E MAP4_3005 hypothetical protein K04485 radA; DNA repair protein RadA/Sms E MAP4_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E MAP4_0793 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E MAP4_1680 putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E MAP4_3554 recombination protein RecR K06187 recR; recombination protein RecR E MAP4_2442 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E MAP4_2819 holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E MAP4_2818 holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E MAP4_2820 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E MAP4_1504 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E MAP4_2985 DNA end-binding protein (Ku domain-containing) K10979 ku; DNA end-binding protein Ku E MAP4_2980 ATP-dependent DNA ligase LigD K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F MAP4_0006 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F MAP4_0005 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F MAP4_3443 DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F MAP4_0542 putative DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F MAP4_0776 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F MAP4_1680 putative DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F MAP4_3554 recombination protein RecR K06187 recR; recombination protein RecR F MAP4_0746 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F MAP4_2505 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F MAP4_2511 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D MAP4_0692 DNA-damage-inducible protein P DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MAP4_3696 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D MAP4_2603 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D MAP4_0961 DNA recombination protein K03553 recA; recombination protein RecA D MAP4_0975 SOS-response repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D MAP4_2442 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D MAP4_0290 hypothetical protein K14161 imuB; protein ImuB D MAP4_0301 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D MAP4_1527 hypothetical protein, single-strand DNA binding protein family K03111 ssb; single-strand DNA-binding protein D MAP4_3807 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D MAP4_0962 recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D MAP4_1392 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D MAP4_0366 ATP-dependent helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D MAP4_4011 mutator protein MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAP4_1197 mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAP4_2560 putative NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D MAP4_0777 putative hydrolase mutT1 K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D MAP4_2438 NUDIX hydrolase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D MAP4_1346 putative phosphohydrolase, NUDIX family K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D MAP4_0998 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D MAP4_0698 ribonucleoside-diphosphate reductase alphachain NrdE K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D MAP4_0703 ribonucleoside-diphosphate reductase beta chain NrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D MAP4_0100 ribonucleoside-diphosphate reductase beta chain NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D MAP4_0900 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024