+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Metarhizium acridum</h2>
%<!-- w=600, -->
!
A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        MAC_03464 putative RNA (guanine-N7-) methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        MAC_03443 Cell division control protein	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        MAC_02431 serine/threonine-protein kinase	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        MAC_03147 mRNA capping enzyme alpha subunit, putative	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
D      Cap binding complex
E        MAC_05230 cap binding protein	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        MAC_02512 nuclear cap binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        MAC_03108 cleavage and polyadenylation specific factor 5	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
D      Pre-mRNA cleavage factor IIm (CFIIm)
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        MAC_07659 Cleavage factor two protein 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        MAC_01481 cleavage and polyadenylylation specificity factor, putative	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        MAC_02910 cleavage and polyadenylation specifity factor	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        MAC_00343 Zinc finger CCCH type domain containing protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        MAC_08162 hypothetical protein	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        MAC_01081 retinoblastoma-binding protein	K15541 MPE1; protein MPE1 
E        MAC_07180 WD40 domain containing protein	K15542 PFS2; polyadenylation factor subunit 2 
E        MAC_08324 WD repeat containing protein 82	K14962 WDR82; COMPASS component SWD2 
E        MAC_06213 serine/threonine-protein phosphatase PP-Z	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        MAC_08661 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        MAC_07420 protein SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        MAC_08811 RNA recognition motif containing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        MAC_07463 CFIA complex component Rna14	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        MAC_03202 mRNA cleavage and polyadenylation specificity factor complex subunit	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        MAC_05247 eukaryotic Sm and Sm-like (LSm) protein	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        MAC_07876 small nuclear ribonucleoprotein Sm D3	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        MAC_05418 LSM domain-containing protein	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        MAC_02612 small nuclear ribonucleoprotein SmF	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        MAC_05164 small nuclear ribonucleoprotein SmG	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        MAC_01481 cleavage and polyadenylylation specificity factor, putative	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        MAC_02910 cleavage and polyadenylation specifity factor	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        MAC_08811 RNA recognition motif containing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        MAC_03202 mRNA cleavage and polyadenylation specificity factor complex subunit	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        MAC_00451 transcriptional elongation protein Spt4, putative	K15171 SUPT4H1; transcription elongation factor SPT4 
E        MAC_02389 transcription initiation protein spt5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        MAC_04269 DUF890 domain-containing protein	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        MAC_08381 hypothetical protein	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
D      Poly(A) addition factors
E        MAC_06479 Poly(A) polymerase	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      MAC_00450 zinc finger protein RTS2	K13102 KIN; DNA/RNA-binding protein KIN17 
D      MAC_05268 arsenite resistance protein Ars2	K27103 SRRT; serrate RNA effector molecule 
D      MAC_07119 nuclear polyadenylated RNA-binding protein Nab2	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        MAC_07678 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        MAC_09091 Mago nashi domain protein	K12877 MAGOH; protein mago nashi 
E        MAC_00994 RNA binding protein, putative	K12881 THOC4; THO complex subunit 4 
E        MAC_03580 protein mlo3-like protein	K12881 THOC4; THO complex subunit 4 
E        MAC_00905 ATP-dependent RNA helicase	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        MAC_04056 eukaryotic initiation factor 4A-12	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        MAC_08090 hypothetical protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        MAC_04096 Sin3-associated polypeptide Sap18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        MAC_00197 hypothetical protein	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        MAC_05260 PWI domain mRNA processing protein, putative	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        MAC_08338 nuclear matrix protein	K12878 THOC1; THO complex subunit 1 
E        MAC_07834 tho2 protein	K12879 THOC2; THO complex subunit 2 
E        MAC_07127 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        MAC_00994 RNA binding protein, putative	K12881 THOC4; THO complex subunit 4 
E        MAC_03580 protein mlo3-like protein	K12881 THOC4; THO complex subunit 4 
E        MAC_04240 hypothetical protein	K13174 THOC5; THO complex subunit 5 
D      TREX-2 complex
E        MAC_00681 PCI domain-containing protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        MAC_05704 hypothetical protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        MAC_03427 centrin	K16466 CETN3; centrin-3 
E        MAC_00759 SAC3/GANP family protein	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        MAC_08556 filament-forming protein	K09291 TPR; nucleoprotein TPR 
E        MAC_07028 Poly(A)+ RNA export protein	K14298 RAE1; mRNA export factor 
E        MAC_08271 protein transport protein SEC13	K14004 SEC13; protein transport protein SEC13 
E        MAC_06668 putative nuclear pore protein NUP57	K14308 NUP54; nuclear pore complex protein Nup54 
E        MAC_01020 hypothetical protein	K14306 NUP62; nuclear pore complex protein Nup62 
E        MAC_00028 putative nucleoporin-interacting protein NIC96	K14309 NUP93; nuclear pore complex protein Nup93 
E        MAC_03426 nucleoporin SONB, putative	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        MAC_04616 nuclear pore complex protein Nup107	K14301 NUP107; nuclear pore complex protein Nup107 
E        MAC_03871 nuclear pore complex subunit Nup133	K14300 NUP133; nuclear pore complex protein Nup133 
E        MAC_04993 hypothetical protein	K14311 NUP188; nuclear pore complex protein Nup188 
E        MAC_00009 nucleoporin Nup157/170	K14312 NUP155; nuclear pore complex protein Nup155 
E        MAC_02544 nuclear pore complex subunit Nup192, putative	K14310 NUP205; nuclear pore complex protein Nup205 
E        MAC_08161 nucleoporin NUP49/NSP49, putative	K14307 NUPL1; nucleoporin p58/p45 
E        MAC_03548 nuclear envelope protein	K14315 NDC1; nucleoporin NDC1 
E        MAC_01337 putative nuclear pore protein	K14299 SEH1; nucleoporin SEH1 
E        MAC_08815 DNA-directed RNA polymerases I and III 40 kDa polypeptide	K18715 NUP159; nucleoporin NUP159 
E        MAC_09476 CCCH zinc finger domain protein	K18716 NUP42; nucleoporin NUP42 
E        MAC_02511 hypothetical protein	K18719 NUP82; nucleoporin NUP82 
E        MAC_03427 centrin	K16466 CETN3; centrin-3 
E        MAC_05955 RNA export mediator Gle1	K18723 GLE1; nucleoporin GLE1 
E        MAC_03014 mRNA export factor mex67	K14284 NXF; nuclear RNA export factor 
E        MAC_09396 nuclear pore complex component, putative	K18724 POM34; nucleoporin POM34 
E        MAC_04704 nucleoporin Pom152	K18725 POM152; nucleoporin POM152 
D      Ran-mediated transport factors
E        MAC_05258 GTP-binding nuclear protein RAN/TC4	K07936 RAN; GTP-binding nuclear protein Ran 
E        MAC_07948 UBX domain protein	K18726 FAF2; FAS-associated factor 2 
E        MAC_02555 cell division control protein Cdc48	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        MAC_03613 exportin-1	K14290 XPO1; exportin-1 
E        MAC_03028 ran GTPase activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        MAC_05985 eukaryotic translation initiation factor 4E-4	K03259 EIF4E; translation initiation factor 4E 
E        MAC_05530 translation Initiation Factor Eif4e	K03259 EIF4E; translation initiation factor 4E 
E        MAC_01024 cell cycle control protein	K03257 EIF4A; translation initiation factor 4A 
E        MAC_08336 eukaryotic translation initiation factor subunit eIF-4F, putative	K03260 EIF4G; translation initiation factor 4G 
E        MAC_09755 RNA recognition motif containing protein	K03258 EIF4B; translation initiation factor 4B 
E        MAC_05951 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MAC_00854 DEAD/DEAH box RNA helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MAC_04252 GYF domain protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        MAC_03484 poly(A) RNA binding protein	K13126 PABPC; polyadenylate-binding protein 
E        MAC_05821 DEAD/DEAH box RNA helicase	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        MAC_06395 activating signal cointegrator 1 complex subunit 3	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        MAC_08290 PUA RNA binding domain protein, putative	K07575 MCTS; malignant T-cell-amplified sequence 
E        MAC_05284 hypothetical protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        MAC_04179 RNA binding protein Pym, putative	K14294 WIBG; partner of Y14 and mago 
E        MAC_07728 heterogeneous nuclear ribonucleoprotein HRP1	K14411 MSI; RNA-binding protein Musashi 
E        MAC_02660 TEF1 protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        MAC_01582 translation factor pelota, putative	K06965 PELO; protein pelota 
E        MAC_07733 putative rrm-type rna binding protein	K14396 PABPN1; polyadenylate-binding protein 2 
E        MAC_02608 ATP dependent RNA helicase (Dbp5), putative	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        MAC_09296 pre-mRNA splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        MAC_08839 hypothetical protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        MAC_07382 Regulator of chromosome condensation family protein	K11493 RCC1; regulator of chromosome condensation 
E        MAC_00821 Ran exchange factor Prp20/Pim1, putative	K11493 RCC1; regulator of chromosome condensation 
E        MAC_02487 Ran exchange factor Prp20/Pim1, putative	K11493 RCC1; regulator of chromosome condensation 
E        MAC_08118 Regulator of chromosome condensation family protein	K11493 RCC1; regulator of chromosome condensation 
E        MAC_01272 SAC3/GANP domain protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        MAC_03125 Eukaryotic release factor 1	K03265 ETF1; peptide chain release factor subunit 1 
E        MAC_04726 putative translation release factor erf3	K03267 ERF3; peptide chain release factor subunit 3 
E        MAC_08625 nonsense-mediated mRNA decay factor (Upf2)	K14327 UPF2; regulator of nonsense transcripts 2 
E        MAC_00069 nonsense-mediated mRNA decay protein Upf3, putative	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        MAC_06412 serine/threonine protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        MAC_08344 protein phosphatase PP2A regulatory subunit A	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        MAC_09072 protein phosphatase PP2A regulatory subunit B	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        MAC_02294 Serine/threonine protein phosphatase 2A	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        MAC_06039 putative B56-delta regulatory subunit of protein phosphatase 2A	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        MAC_03130 hypothetical protein	K14409 SMG7; protein SMG7 
E        MAC_04252 GYF domain protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        MAC_01619 GTP-binding protein 1	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        MAC_05294 RNA-binding protein of the Puf family,translational repressor	K14844 PUF6; pumilio homology domain family member 6 
E        MAC_03680 KH domain RNA-binding protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        MAC_04233 hypothetical protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        MAC_02395 putative myosin MYO2	K10357 MYO5; myosin V 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        MAC_01847 far upstream element-binding protein 2	K13210 FUBP; far upstream element-binding protein 
E        MAC_00964 translation elongation factor 1 alpha	K03231 EEF1A; elongation factor 1-alpha 
E        MAC_00457 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        MAC_05956 cell wall biogenesis protein phosphatase Ssd1, putative	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        MAC_05995 exonuclease	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        MAC_07464 eukaryotic translation initiation factor 2c	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        MAC_05985 eukaryotic translation initiation factor 4E-4	K03259 EIF4E; translation initiation factor 4E 
E        MAC_05530 translation Initiation Factor Eif4e	K03259 EIF4E; translation initiation factor 4E 
E        MAC_05951 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MAC_00854 DEAD/DEAH box RNA helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        MAC_01471 ATP-dependent RNA helicase DHH1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        MAC_03564 G2/M phase checkpoint control protein Sum2, putative	K18749 LSM14; protein LSM14 
E        MAC_05626 putative importin	K18752 TNPO1; transportin-1 
E        MAC_03130 hypothetical protein	K14409 SMG7; protein SMG7 
E        MAC_00809 serine/threonine-protein kinase PRKX	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        MAC_08643 cAMP-dependent protein kinase catalytic subunit	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        MAC_07139 La domain family	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        MAC_08320 decapping enzyme Dcp2, putative	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        MAC_03540 small nuclear ribonucleoprotein (LSM1)	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        MAC_01618 U6 snRNP-associated protein Lsm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        MAC_06763 small nuclear ribonucleoprotein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        MAC_05931 putative U6 snRNA-associated protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        MAC_03765 U6 snRNA-associated protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        MAC_07950 U6 snRNA-associated protein LSm7, putative	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        MAC_02395 putative myosin MYO2	K10357 MYO5; myosin V 
E        MAC_05657 Tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        MAC_03206 alpha-tubulin	K07374 TUBA; tubulin alpha 
E        MAC_03438 Ccr4-Not transcription complex subunit (NOT1), putative	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        MAC_00696 NOT2 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        MAC_08519 CCR4-NOT transcription complex	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        MAC_03385 general negative regulator of transcription subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        MAC_01983 Glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        MAC_02815 CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        MAC_04730 PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        MAC_07949 PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        MAC_03995 topoisomerase II-associated protein PAT1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        MAC_02550 YjeF-N domain protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        MAC_08625 nonsense-mediated mRNA decay factor (Upf2)	K14327 UPF2; regulator of nonsense transcripts 2 
E        MAC_00069 nonsense-mediated mRNA decay protein Upf3, putative	K14328 UPF3; regulator of nonsense transcripts 3 
E        MAC_04149 putative DNA-directed RNA polymerase II chain Rpb7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        MAC_08331 TIA1 cytotoxic granule-associated RNA binding protein	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        MAC_03484 poly(A) RNA binding protein	K13126 PABPC; polyadenylate-binding protein 
E        MAC_00397 NTF2 and RRM domain-containing protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        MAC_04691 eukaryotic translation initiation factor subunit eIF2A, putative	K15026 EIF2A; translation initiation factor 2A 
E        MAC_05910 eukaryotic translation initiation factor 3	K03253 EIF3B; translation initiation factor 3 subunit B 
E        MAC_01024 cell cycle control protein	K03257 EIF4A; translation initiation factor 4A 
E        MAC_04056 eukaryotic initiation factor 4A-12	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        MAC_09755 RNA recognition motif containing protein	K03258 EIF4B; translation initiation factor 4B 
E        MAC_08336 eukaryotic translation initiation factor subunit eIF-4F, putative	K03260 EIF4G; translation initiation factor 4G 
E        MAC_00794 G-protein beta subunit	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        MAC_03014 mRNA export factor mex67	K14284 NXF; nuclear RNA export factor 
E        MAC_08042 putative histone deacetylase A	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        MAC_08320 decapping enzyme Dcp2, putative	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        MAC_01471 ATP-dependent RNA helicase DHH1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        MAC_02550 YjeF-N domain protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        MAC_03995 topoisomerase II-associated protein PAT1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        MAC_03540 small nuclear ribonucleoprotein (LSM1)	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        MAC_01618 U6 snRNP-associated protein Lsm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        MAC_06763 small nuclear ribonucleoprotein	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        MAC_05931 putative U6 snRNA-associated protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        MAC_03765 U6 snRNA-associated protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        MAC_07950 U6 snRNA-associated protein LSm7, putative	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
D      5' exonucleases
E        MAC_05995 exonuclease	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        MAC_09299 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        MAC_06415 mRNA decapping hydrolase, putative	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        MAC_09020 exosomal core protein CSL4	K07573 CSL4; exosome complex component CSL4 
E        MAC_03865 putative 3'->5' exoribonuclease	K03679 RRP4; exosome complex component RRP4 
E        MAC_00925 hypothetical protein	K03681 RRP40; exosome complex component RRP40 
E        MAC_06575 exosome complex exonuclease RRP41	K11600 RRP41; exosome complex component RRP41 
E        MAC_05255 hypothetical protein	K12590 RRP46; exosome complex component RRP46 
E        MAC_09291 3' exoribonuclease	K12587 MTR3; exosome complex component MTR3 
E        MAC_03537 3' exoribonuclease family protein (Rrp42), putative	K12589 RRP42; exosome complex component RRP42 
E        MAC_04892 3' exoribonuclease family protein	K12586 RRP43; exosome complex component RRP43 
E        MAC_02535 3' exoribonuclease	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        MAC_04193 mitotic control protein dis3	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        MAC_01921 exosome complex exonuclease Rrp	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        MAC_07588 exosome-associated family protein	K12592 C1D; exosome complex protein LRP1 
D      TRAMP complex
E        MAC_04765 topoisomerase family protein TRF4	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        MAC_04317 zinc knuckle domain protein	K12597 AIR1_2; protein AIR1/2 
E        MAC_05806 ATP-dependent RNA helicase DOB1	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        MAC_05821 DEAD/DEAH box RNA helicase	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        MAC_04643 antiviral protein (Ski3), putative	K12600 SKI3; superkiller protein 3 
E        MAC_03633 meiotic recombination protein Ski8/Rec14, putative	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        MAC_01983 Glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        MAC_03438 Ccr4-Not transcription complex subunit (NOT1), putative	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        MAC_00696 NOT2 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        MAC_08519 CCR4-NOT transcription complex	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        MAC_03385 general negative regulator of transcription subunit 4	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        MAC_02815 CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        MAC_08282 cell differentiation protein rcd1	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        MAC_05105 ABC transporter, putative	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        MAC_03173 PH domain protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        MAC_04730 PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        MAC_07949 PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        MAC_06415 mRNA decapping hydrolase, putative	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        MAC_07172 hypothetical protein	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        MAC_06469 protein VTS	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        MAC_07221 abhydrolase domain-containing protein	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        MAC_03212 oligoribonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        MAC_04594 putative enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        MAC_04898 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        MAC_00721 heat shock 70 kDa protein precursor	K04043 dnaK; molecular chaperone DnaK 
E        MAC_09574 Heat shock protein 60 precursor (Antigen HIS-62)	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        MAC_03865 putative 3'->5' exoribonuclease	K03679 RRP4; exosome complex component RRP4 
E        MAC_09020 exosomal core protein CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        MAC_06575 exosome complex exonuclease RRP41	K11600 RRP41; exosome complex component RRP41 
E        MAC_03537 3' exoribonuclease family protein (Rrp42), putative	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
#[ <a href="/kegg/brite.html">BRITE</a> | <a href="/kegg/kegg2.html">KEGG2</a> | <a href="/kegg/">KEGG</a> ]<br>
#Last updated: April 25, 2024