+E Transcription factors KO
#
Transcription Factors - Mycolicibacterium rhodesiae
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
D MycrhN_3844 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D MycrhN_5521 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
D MycrhN_1447 transcriptional regulator, ArgP family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
C DeoR family
D MycrhN_1625 transcriptional regulator of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D MycrhN_4196 ABC-type sugar transport system, periplasmic component K02529 galR; LacI family transcriptional regulator, galactose operon repressor
C GntR family
D MycrhN_1525 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D MycrhN_2710 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D MycrhN_3129 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MycrhN_6070 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MycrhN_1392 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MycrhN_4942 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MycrhN_3592 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MycrhN_4754 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D MycrhN_1960 transcriptional regulator with HTH domain and aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D MycrhN_6334 transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D MycrhN_5236 transcriptional regulator K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D MycrhN_3473 Tetracyclin repressor, C-terminal all-alpha domain protein K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D MycrhN_0480 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D MycrhN_1129 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D MycrhN_3874 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D MycrhN_1659 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D MycrhN_2701 transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon
D MycrhN_5804 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D MycrhN_1894 transcriptional regulator K21961 ethR; TetR/AcrR family transcriptional regulator, ethionamide resistance regulator
D MycrhN_5290 transcriptional regulator K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D MycrhN_0039 transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MycrhN_6133 transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MycrhN_2239 transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MycrhN_2464 transcriptional regulator K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MycrhN_2268 transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D MycrhN_6093 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D MycrhN_0711 mycofactocin system transcriptional regulator K24699 mftR; TetR/AcrR family transcriptional regulator, regulator of mycofactocin system
D MycrhN_4178 transcriptional regulator K27107 mce3R; TetR/AcrR family transcriptional regulator, mce3 operon repressor
C Lrp/AsnC family
D MycrhN_0510 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D MycrhN_0461 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D MycrhN_4191 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
C MarR family
D MycrhN_3180 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D MycrhN_1861 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D MycrhN_2863 putative transcriptional regulator K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D MycrhN_3386 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D MycrhN_1338 putative transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D MycrhN_6319 putative transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D MycrhN_1897 putative transcriptional regulator K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D MycrhN_5923 hypothetical protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D MycrhN_4347 Fe2+/Zn2+ uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D MycrhN_4977 Fe2+/Zn2+ uptake regulation protein K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D MycrhN_1559 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D MycrhN_2137 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D MycrhN_0956 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
D MycrhN_4467 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MycrhN_0986 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MycrhN_2856 putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D MycrhN_4223 putative transcriptional regulator K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D MycrhN_5695 putative transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D MycrhN_4348 putative transcriptional regulator K22298 smtB; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
D MycrhN_1178 putative transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D MycrhN_5625 putative transcriptional regulator K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
C Other families
D MycrhN_5576 Mn-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D MycrhN_5656 Mn-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D MycrhN_4830 putative transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D MycrhN_0436 birA, biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D MycrhN_3031 transcriptional activator of acetoin/glycerol metabolism K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D MycrhN_1906 Helix-turn-helix protein K27097 espR; ESX-1-secreted protein regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D MycrhN_2961 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_0421 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_2131 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_0573 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_0362 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_1863 Transcription factor WhiB K18957 whiB6; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_3884 Transcription factor WhiB K18957 whiB6; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_0336 Transcription factor WhiB-like protein K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D MycrhN_2801 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MycrhN_1552 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MycrhN_2826 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D MycrhN_1209 DNA-binding transcriptional activator of the SARP family K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MycrhN_0401 DNA-binding transcriptional activator of the SARP family K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MycrhN_1374 DNA-binding transcriptional activator of the SARP family K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MycrhN_3495 DNA-binding transcriptional activator of the SARP family K22894 embR; SARP family transcriptional regulator, regulator of embCAB operon
D MycrhN_1811 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D MycrhN_2222 CarD-like transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D MycrhN_4665 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D MycrhN_4330 heat shock gene repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D MycrhN_1732 putative transcription activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D MycrhN_0738 phenylacetic acid-responsive transcriptional repressor K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D MycrhN_3437 phenylacetic acid-responsive transcriptional repressor K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D MycrhN_5380 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D MycrhN_5194 transcriptional regulator K07734 paiB; transcriptional regulator
D MycrhN_1797 putative transcriptional regulator K07735 algH; putative transcriptional regulator
D MycrhN_5583 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D MycrhN_4542 mraZ protein K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
#
Classification taken and modified from TRANSFAC 7.0