+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Prunus avium (sweet cherry)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        110765505 mRNA cap guanine-N7 methyltransferase 2	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        110752201 mRNA cap guanine-N7 methyltransferase 1	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        110757331 mRNA-capping enzyme	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        110747017 cyclin-dependent kinase D-3	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
D      Cap binding complex
E        110761574 nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        110761618 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        110749286 pre-mRNA cleavage factor Im 25 kDa subunit 1	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        110767754 pre-mRNA cleavage factor Im 25 kDa subunit 2	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        110760538 cleavage and polyadenylation specificity factor subunit 6 isoform X1	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
E        110760328 uncharacterized protein LOC110760328	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        110752441 protein CLP1 homolog isoform X1	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        110753514 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        110763061 polyadenylation and cleavage factor homolog 4 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        110764714 cleavage and polyadenylation specificity factor subunit 1 isoform X1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        110767735 cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        110765663 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        110765664 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        110755501 30-kDa cleavage and polyadenylation specificity factor 30	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        110749902 uncharacterized protein LOC110749902 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        110770359 flowering time control protein FY	K15542 PFS2; polyadenylation factor subunit 2 
E        110755793 protein ANTHESIS POMOTING FACTOR 1 isoform X1	K14962 WDR82; COMPASS component SWD2 
E        110758526 protein ANTHESIS POMOTING FACTOR 1	K14962 WDR82; COMPASS component SWD2 
E        110748973 serine/threonine-protein phosphatase PP1-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110754323 serine/threonine-protein phosphatase PP1 isozyme 3-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110756651 serine/threonine-protein phosphatase PP1 isozyme 4	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110769380 serine/threonine-protein phosphatase PP1 isozyme 2-like	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110745078 serine/threonine-protein phosphatase PP1 isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110762493 serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        110745364 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        110753410 cleavage stimulation factor subunit 50 isoform X1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        110762191 cleavage stimulating factor 64	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        110763900 cleavage stimulation factor subunit 77 isoform X1	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        110770483 uncharacterized protein LOC110770483	K06100 SYMPK; symplekin 
E        110772068 uncharacterized protein LOC110772068	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        110754330 small nuclear ribonucleoprotein-associated protein B'-like	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        110745891 small nuclear ribonucleoprotein-associated protein B'-like	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        110753590 small nuclear ribonucleoprotein SmD3b	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        110770051 probable small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        110747243 probable small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        110747263 small nuclear ribonucleoprotein E-like	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        110753418 probable small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        110765661 probable small nuclear ribonucleoprotein F isoform X1	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        110761648 probable small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        110767735 cleavage and polyadenylation specificity factor subunit 2 isoform X1	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        110765663 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        110765664 cleavage and polyadenylation specificity factor subunit 3-I-like	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        110762191 cleavage stimulating factor 64	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        110770483 uncharacterized protein LOC110770483	K06100 SYMPK; symplekin 
E        110772068 uncharacterized protein LOC110772068	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        110765076 transcription elongation factor SPT4 homolog 1-like	K15171 SUPT4H1; transcription elongation factor SPT4 
E        110749785 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
E        110748314 putative transcription elongation factor SPT5 homolog 1	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        110758914 N6-adenosine-methyltransferase MT-A70-like	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        110774093 N6-adenosine-methyltransferase MT-A70-like	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        110767730 methyltransferase-like protein 1	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        110753721 methyltransferase-like protein 16 homolog	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        110766923 FKBP12-interacting protein of 37 kDa	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        110767157 uncharacterized protein DDB_G0287625	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        110774387 E3 ubiquitin-protein ligase Hakai	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        110744556 nuclear poly(A) polymerase 4-like	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        110746800 nuclear poly(A) polymerase 1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        110761211 nuclear poly(A) polymerase 4	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        110748432 nuclear poly(A) polymerase 4-like	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        110761314 nuclear poly(A) polymerase 4-like	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        110757424 BRCA1-associated RING domain protein 1	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        110755517 protein BREAST CANCER SUSCEPTIBILITY 1 homolog	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        110756181 zinc finger CCCH domain-containing protein 41	K13192 RBM26; RNA-binding protein 26 
E        110744918 uncharacterized protein LOC110744918 isoform X1	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        110773275 uncharacterized protein LOC110773275	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        110758546 uncharacterized protein LOC110758546 isoform X1	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
C    Other processing factors
D      110756621 KIN17-like protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      110769534 methyltransferase-like protein 22	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      110774295 serrate RNA effector molecule	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        110747410 RNA-binding protein Y14-like	K12876 RBM8A; RNA-binding protein 8A 
E        110753960 RNA-binding protein Y14A	K12876 RBM8A; RNA-binding protein 8A 
E        110747364 RNA-binding protein Y14-like	K12876 RBM8A; RNA-binding protein 8A 
E        110746501 protein mago nashi homolog	K12877 MAGOH; protein mago nashi 
E        110755121 THO complex subunit 4D-like isoform X1	K12881 THOC4; THO complex subunit 4 
E        110762071 THO complex subunit 4A isoform X1	K12881 THOC4; THO complex subunit 4 
E        110756711 THO complex subunit 4A-like	K12881 THOC4; THO complex subunit 4 
E        110763769 DEAD-box ATP-dependent RNA helicase 56 isoform X1	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        110750407 DEAD-box ATP-dependent RNA helicase 56-like isoform X1	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        110771016 eukaryotic initiation factor 4A-3-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        110754597 eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        110747792 histone deacetylase complex subunit SAP18-like	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        110766432 histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        110764843 pinin	K13114 PNN; pinin 
E        110773611 apoptotic chromatin condensation inducer in the nucleus	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        110761122 serine/arginine-rich splicing factor SR45 isoform X1	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        110757078 serine/arginine repetitive matrix protein 1	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        110772734 THO complex subunit 1 isoform X1	K12878 THOC1; THO complex subunit 1 
E        110772029 THO complex subunit 2 isoform X1	K12879 THOC2; THO complex subunit 2 
E        110767539 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        110755121 THO complex subunit 4D-like isoform X1	K12881 THOC4; THO complex subunit 4 
E        110762071 THO complex subunit 4A isoform X1	K12881 THOC4; THO complex subunit 4 
E        110756711 THO complex subunit 4A-like	K12881 THOC4; THO complex subunit 4 
E        110761991 THO complex subunit 5B-like	K13174 THOC5; THO complex subunit 5 
E        110747422 THO complex subunit 7A-like	K13176 THOC7; THO complex subunit 7 
E        110752723 LOW QUALITY PROTEIN: THO complex subunit 7A-like	K13176 THOC7; THO complex subunit 7 
E        110746796 THO complex subunit 7A-like	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        110751008 enhanced ethylene response protein 5	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        110766934 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        110761851 protein DSS1 HOMOLOG ON CHROMOSOME V-like	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        110764462 uncharacterized protein LOC110764462 isoform X1	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        110750437 SAC3 family protein B isoform X1	K23719 SAC3; nuclear mRNA export protein SAC3 
E        110772782 SAC3 family protein C	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        110746470 nuclear-pore anchor isoform X1	K09291 TPR; nucleoprotein TPR 
E        110756282 protein RAE1-like isoform X1	K14298 RAE1; mRNA export factor 
E        110756294 protein RAE1-like	K14298 RAE1; mRNA export factor 
E        110755528 protein RAE1-like	K14298 RAE1; mRNA export factor 
E        110767063 protein RAE1-like	K14298 RAE1; mRNA export factor 
E        110760766 protein transport protein SEC13 homolog B-like	K14004 SEC13; protein transport protein SEC13 
E        110762752 protein transport protein SEC13 homolog B	K14004 SEC13; protein transport protein SEC13 
E        110761187 nuclear pore complex protein NUP85	K14304 NUP85; nuclear pore complex protein Nup85 
E        110762813 nuclear pore complex protein NUP85-like	K14304 NUP85; nuclear pore complex protein Nup85 
E        110763890 nuclear pore complex protein NUP43	K14305 NUP43; nuclear pore complex protein Nup43 
E        110747863 nucleoporin NUP152	K14295 NUP50; nuclear pore complex protein Nup50 
E        110769525 nuclear pore complex protein NUP54	K14308 NUP54; nuclear pore complex protein Nup54 
E        110749000 nuclear pore complex protein NUP62-like	K14306 NUP62; nuclear pore complex protein Nup62 
E        110749001 putative GPI-anchored protein pfl2	K14306 NUP62; nuclear pore complex protein Nup62 
E        110749730 nuclear pore complex protein NUP88	K14318 NUP88; nuclear pore complex protein Nup88 
E        110773262 nuclear pore complex protein NUP93A-like	K14309 NUP93; nuclear pore complex protein Nup93 
E        110757786 nuclear pore complex protein NUP98A isoform X1	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        110757787 nuclear pore complex protein NUP98A-like isoform X1	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        110759114 nuclear pore complex protein NUP96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        110768873 nuclear pore complex protein NUP107	K14301 NUP107; nuclear pore complex protein Nup107 
E        110749938 nuclear pore complex protein NUP133 isoform X1	K14300 NUP133; nuclear pore complex protein Nup133 
E        110761727 uncharacterized protein LOC110761727 isoform X1	K14311 NUP188; nuclear pore complex protein Nup188 
E        110762735 nuclear pore complex protein NUP155	K14312 NUP155; nuclear pore complex protein Nup155 
E        110752331 nuclear pore complex protein NUP160	K14303 NUP160; nuclear pore complex protein Nup160 
E        110760770 nuclear pore complex protein NUP35	K14313 NUP35; nuclear pore complex protein Nup53 
E        110759918 nuclear pore complex protein NUP205	K14310 NUP205; nuclear pore complex protein Nup205 
E        110756552 LOW QUALITY PROTEIN: nuclear pore complex protein GP210	K14314 NUP210; nuclear pore complex protein Nup210 
E        110758987 nuclear pore complex protein NUP214 isoform X1	K14317 NUP214; nuclear pore complex protein Nup214 
E        110753001 nuclear pore complex protein NUP58	K14307 NUPL1; nucleoporin p58/p45 
E        110756493 zinc finger CCCH domain-containing protein 16	K14321 NUPL2; nucleoporin-like protein 2 
E        110774047 uncharacterized protein LOC110774047	K14315 NDC1; nucleoporin NDC1 
E        110747352 protein SEH1-like	K14299 SEH1; nucleoporin SEH1 
E        110760646 protein SEH1-like	K14299 SEH1; nucleoporin SEH1 
E        110771370 aladin isoform X1	K14320 AAAS; aladin 
E        110760527 protein GLE1 isoform X1	K18723 GLE1; nucleoporin GLE1 
D      Ran-mediated transport factors
E        110759925 GTP-binding nuclear protein Ran-3-like	K07936 RAN; GTP-binding nuclear protein Ran 
E        110769114 GTP-binding nuclear protein Ran-3	K07936 RAN; GTP-binding nuclear protein Ran 
E        110769115 GTP-binding nuclear protein Ran-3-like	K07936 RAN; GTP-binding nuclear protein Ran 
E        110766900 plant UBX domain-containing protein 10-like	K18726 FAF2; FAS-associated factor 2 
E        110758922 plant UBX domain-containing protein 10	K18726 FAF2; FAS-associated factor 2 
E        110768088 cell division control protein 48 homolog D	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        110755395 cell division cycle protein 48 homolog	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        110745454 EEF1A lysine methyltransferase 3-like	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        110746520 protein N-lysine methyltransferase METTL21A-like	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        110745709 protein N-lysine methyltransferase METTL21A-like	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        110755471 protein-lysine methyltransferase METTL21D	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        110746711 protein-lysine methyltransferase C42C1.13-like	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        110773197 protein-lysine methyltransferase C42C1.13-like	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        110749577 protein EXPORTIN 1A	K14290 XPO1; exportin-1 
E        110765244 exportin-7 isoform X1	K18460 XPO7; exportin-7 
E        110770330 LOW QUALITY PROTEIN: RAN GTPase-activating protein 2	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        110749826 RAN GTPase-activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        110745723 eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        110766625 eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        110773407 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        110759451 eukaryotic initiation factor 4A-11	K03257 EIF4A; translation initiation factor 4A 
E        110759465 eukaryotic initiation factor 4A-7-like	K03257 EIF4A; translation initiation factor 4A 
E        110764799 eukaryotic initiation factor 4A-14-like	K03257 EIF4A; translation initiation factor 4A 
E        110766363 eukaryotic initiation factor 4A-I isoform X1	K03257 EIF4A; translation initiation factor 4A 
E        110749166 eukaryotic initiation factor 4A-2-like	K03257 EIF4A; translation initiation factor 4A 
E        110756957 eukaryotic translation initiation factor-like	K03260 EIF4G; translation initiation factor 4G 
E        110762576 eukaryotic translation initiation factor-like	K03260 EIF4G; translation initiation factor 4G 
E        110764156 eukaryotic translation initiation factor 4G	K03260 EIF4G; translation initiation factor 4G 
E        110745034 protein PIR	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        110759927 DEAD-box ATP-dependent RNA helicase 52C-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        110749080 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        110762981 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        110764395 uncharacterized protein LOC110764395 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        110756775 uncharacterized protein LOC110756775	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        110760947 30S ribosomal protein 2, chloroplastic	K13126 PABPC; polyadenylate-binding protein 
E        110765173 polyadenylate-binding protein 8-like	K13126 PABPC; polyadenylate-binding protein 
E        110765310 polyadenylate-binding protein 3-like	K13126 PABPC; polyadenylate-binding protein 
E        110754230 polyadenylate-binding protein 7 isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        110744470 polyadenylate-binding protein 4-like	K13126 PABPC; polyadenylate-binding protein 
E        110761930 polyadenylate-binding protein 2-like	K13126 PABPC; polyadenylate-binding protein 
E        110762508 DExH-box ATP-dependent RNA helicase DExH11 isoform X1	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        110746132 malignant T-cell-amplified sequence 1-A isoform X1	K07575 MCTS; malignant T-cell-amplified sequence 
E        110749269 translation machinery-associated protein 22	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        110764875 partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        110770752 UBP1-associated protein 2A-like isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110755661 heterogeneous nuclear ribonucleoprotein 1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110760168 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110759485 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110744970 UBP1-associated protein 2C-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110754910 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110745605 UBP1-associated protein 2B-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110768566 UBP1-associated protein 2A-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110753338 glycine-rich RNA-binding protein blt801-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110745732 heterogeneous nuclear ribonucleoprotein 1	K14411 MSI; RNA-binding protein Musashi 
E        110763151 RNA-binding protein 1-like	K14411 MSI; RNA-binding protein Musashi 
E        110771932 heterogeneous nuclear ribonucleoprotein 1-like	K14411 MSI; RNA-binding protein Musashi 
E        110765929 DAZ-associated protein 1	K14411 MSI; RNA-binding protein Musashi 
E        110770220 heterogeneous nuclear ribonucleoprotein 1-like	K14411 MSI; RNA-binding protein Musashi 
E        110770223 heterogeneous nuclear ribonucleoprotein 1-like	K14411 MSI; RNA-binding protein Musashi 
E        110758265 heterogeneous nuclear ribonucleoprotein 1-like isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        110774538 HBS1-like protein isoform X1	K14416 HBS1; elongation factor 1 alpha-like protein 
E        110760464 protein PELOTA 1	K06965 PELO; protein pelota 
E        110746283 polyadenylate-binding protein 2 isoform X1	K14396 PABPN1; polyadenylate-binding protein 2 
E        110768828 polyadenylate-binding protein 1	K14396 PABPN1; polyadenylate-binding protein 2 
E        110754224 DEAD-box ATP-dependent RNA helicase 38	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        110758000 pre-mRNA-splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        110767242 protein MODIFIER OF SNC1 11 isoform X1	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        110759008 transcription factor Pur-alpha 1 isoform X1	K21772 PURA; transcriptional activator protein Pur-alpha 
E        110756643 SAC3 family protein A isoform X1	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        110769698 eukaryotic peptide chain release factor subunit 1-3-like	K03265 ETF1; peptide chain release factor subunit 1 
E        110764427 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        110750094 eukaryotic peptide chain release factor subunit 1-3-like	K03265 ETF1; peptide chain release factor subunit 1 
E        110755368 eukaryotic peptide chain release factor subunit 1-3	K03265 ETF1; peptide chain release factor subunit 1 
E        110746358 eukaryotic peptide chain release factor GTP-binding subunit ERF3A	K03267 ERF3; peptide chain release factor subunit 3 
E        110756272 regulator of nonsense transcripts 1 homolog isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        110761066 regulator of nonsense transcripts UPF2 isoform X1	K14327 UPF2; regulator of nonsense transcripts 2 
E        110771219 regulator of nonsense transcripts UPF3 isoform X1	K14328 UPF3; regulator of nonsense transcripts 3 
E        110765749 regulator of nonsense transcripts UPF3-like	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        110760738 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        110749079 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        110762974 serine/threonine-protein phosphatase PP2A-2 catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        110752059 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        110754085 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        110757148 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        110766958 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        110769887 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        110744833 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        110760691 probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        110754280 serine/threonine protein phosphatase 2A regulatory subunit B''beta-like	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        110757480 serine/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X1	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        110771449 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110756225 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110759410 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110766290 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110765513 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110771273 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110753742 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110753130 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        110753132 serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        110765969 uncharacterized protein LOC110765969	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        110756297 protein SMG7	K14409 SMG7; protein SMG7 
E        110755296 uncharacterized protein LOC110755296	K18734 SMG8; protein SMG8 
E        110758562 protein SMG9-like	K18735 SMG9; protein SMG9 
E        110764395 uncharacterized protein LOC110764395 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        110756775 uncharacterized protein LOC110756775	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
C    Factors involved in mRNA localization
D      Cargo complex
E        110750302 pumilio homolog 24	K14844 PUF6; pumilio homology domain family member 6 
E        110772946 myosin-2 isoform X1	K10357 MYO5; myosin V 
E        110749284 myosin-17-like	K10357 MYO5; myosin V 
E        110750930 myosin-6-like	K10357 MYO5; myosin V 
E        110757468 myosin-11 isoform X1	K10357 MYO5; myosin V 
E        110749431 myosin-15	K10357 MYO5; myosin V 
E        110760740 myosin-12	K10357 MYO5; myosin V 
E        110750081 myosin-6-like	K10357 MYO5; myosin V 
E        110750116 myosin-6-like	K10357 MYO5; myosin V 
E        110754355 myosin-11-like	K10357 MYO5; myosin V 
E        110744824 exosome component 10	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        110761169 far upstream element-binding protein 2-like isoform X1	K13210 FUBP; far upstream element-binding protein 
E        110762946 far upstream element-binding protein 1-like	K13210 FUBP; far upstream element-binding protein 
E        110744832 far upstream element-binding protein 2	K13210 FUBP; far upstream element-binding protein 
E        110771043 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        110771294 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        110754027 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        110760563 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        110771221 elongation factor 1-gamma-like	K03233 EEF1G; elongation factor 1-gamma 
E        110765648 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        110765654 elongation factor 1-gamma-like	K03233 EEF1G; elongation factor 1-gamma 
E        110751548 probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
D      Other mRNA localization factors
E        110745034 protein PIR	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        110752380 KH domain-containing protein HEN4	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110774022 KH domain-containing protein At4g18375-like isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110761528 flowering locus K homology domain-like isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110754305 flowering locus K homology domain	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110744682 KH domain-containing protein HEN4	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110749609 RNA-binding KH domain-containing protein RCF3-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110758423 RNA-binding KH domain-containing protein PEPPER	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110755550 KH domain-containing protein HEN4 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110758239 RNA-binding KH domain-containing protein RCF3-like	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        110772086 KH domain-containing protein HEN4-like isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        110761459 protein argonaute 2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110761460 LOW QUALITY PROTEIN: protein argonaute 2-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110760968 protein argonaute 10	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110770142 protein argonaute 4A-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110751408 protein argonaute 7 isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110757873 protein argonaute 4A-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110755283 protein argonaute 5	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110745868 protein argonaute 1-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110745876 protein argonaute 1-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110770856 protein argonaute 4-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110771464 protein argonaute 16	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110747006 protein argonaute 4A-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        110745723 eukaryotic translation initiation factor	K03259 EIF4E; translation initiation factor 4E 
E        110766625 eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        110773407 eukaryotic translation initiation factor NCBP	K03259 EIF4E; translation initiation factor 4E 
E        110756272 regulator of nonsense transcripts 1 homolog isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        110759927 DEAD-box ATP-dependent RNA helicase 52C-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        110749080 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        110762981 DEAD-box ATP-dependent RNA helicase 37-like	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        110759294 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        110752259 protein decapping 5-like isoform X1	K18749 LSM14; protein LSM14 
E        110757725 protein decapping 5	K18749 LSM14; protein LSM14 
E        110758396 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        110755017 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        110758379 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        110758395 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        110758451 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        110758470 probable RNA helicase SDE3	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        110753755 transportin-1 isoform X1	K18752 TNPO1; transportin-1 
E        110765969 uncharacterized protein LOC110765969	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        110756297 protein SMG7	K14409 SMG7; protein SMG7 
E        110748379 zinc finger CCCH domain-containing protein 15-like	K18753 ZFP36L; butyrate response factor 
E        110746045 zinc finger CCCH domain-containing protein 14-like isoform X1	K18753 ZFP36L; butyrate response factor 
E        110767020 mRNA decay activator protein ZFP36-like	K18753 ZFP36L; butyrate response factor 
E        110770752 UBP1-associated protein 2A-like isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110755661 heterogeneous nuclear ribonucleoprotein 1-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110760168 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110759485 heterogeneous nuclear ribonucleoprotein 1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110744970 UBP1-associated protein 2C-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110754910 UBP1-associated protein 2C	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110745605 UBP1-associated protein 2B-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110768566 UBP1-associated protein 2A-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110753338 glycine-rich RNA-binding protein blt801-like	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        110768237 la-related protein 1C-like	K18757 LARP1; la-related protein 1 
E        110757910 la-related protein 1C-like	K18757 LARP1; la-related protein 1 
E        110746954 la-related protein 1A-like	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        110767993 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        110761435 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        110750028 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        110749213 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        110768885 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        110771417 sm-like protein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        110763872 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        110773786 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        110761843 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        110770676 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        110756855 sm-like protein LSM36B	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        110764218 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        110745250 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        110764825 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        110772946 myosin-2 isoform X1	K10357 MYO5; myosin V 
E        110749284 myosin-17-like	K10357 MYO5; myosin V 
E        110750930 myosin-6-like	K10357 MYO5; myosin V 
E        110757468 myosin-11 isoform X1	K10357 MYO5; myosin V 
E        110749431 myosin-15	K10357 MYO5; myosin V 
E        110760740 myosin-12	K10357 MYO5; myosin V 
E        110750081 myosin-6-like	K10357 MYO5; myosin V 
E        110750116 myosin-6-like	K10357 MYO5; myosin V 
E        110754355 myosin-11-like	K10357 MYO5; myosin V 
E        110772074 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        110760890 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        110758993 tubulin alpha-3 chain-like isoform X1	K07374 TUBA; tubulin alpha 
E        110755890 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        110773403 tubulin alpha-3 chain	K07374 TUBA; tubulin alpha 
E        110764603 tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        110751076 CCR4-NOT transcription complex subunit 1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        110773673 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        110745899 CCR4-NOT transcription complex subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        110752737 uncharacterized protein LOC110752737 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        110744512 putative general negative regulator of transcription C16C9.04c	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        110772750 carbon catabolite repressor protein 4 homolog 4 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        110749077 carbon catabolite repressor protein 4 homolog 1 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        110759574 carbon catabolite repressor protein 4 homolog 1-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        110771184 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110773606 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110751637 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110762608 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110756810 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110759995 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110752238 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110752241 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110757905 putative CCR4-associated factor 1 homolog 4	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110769658 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110772184 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110761692 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110752832 DIS3-like exonuclease 2 isoform X1	K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
E        110768718 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        110761126 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        110754810 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        110761066 regulator of nonsense transcripts UPF2 isoform X1	K14327 UPF2; regulator of nonsense transcripts 2 
E        110771219 regulator of nonsense transcripts UPF3 isoform X1	K14328 UPF3; regulator of nonsense transcripts 3 
E        110765749 regulator of nonsense transcripts UPF3-like	K14328 UPF3; regulator of nonsense transcripts 3 
E        110760526 uncharacterized protein LOC110760526	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        110760358 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        110752050 uncharacterized protein LOC110752050	K20102 YTHDF; YTH domain-containing family protein 
E        110759056 uncharacterized protein LOC110759056 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        110748705 YTH domain-containing family protein 2-like	K20102 YTHDF; YTH domain-containing family protein 
E        110765680 uncharacterized protein LOC110765680 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        110746471 YTH domain-containing family protein 2	K20102 YTHDF; YTH domain-containing family protein 
E        110761664 uncharacterized protein LOC110761664 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        110761274 oligouridylate-binding protein 1-like	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        110768876 oligouridylate-binding protein 1B	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        110749129 oligouridylate-binding protein 1-like	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        110760947 30S ribosomal protein 2, chloroplastic	K13126 PABPC; polyadenylate-binding protein 
E        110765173 polyadenylate-binding protein 8-like	K13126 PABPC; polyadenylate-binding protein 
E        110765310 polyadenylate-binding protein 3-like	K13126 PABPC; polyadenylate-binding protein 
E        110754230 polyadenylate-binding protein 7 isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        110744470 polyadenylate-binding protein 4-like	K13126 PABPC; polyadenylate-binding protein 
E        110761930 polyadenylate-binding protein 2-like	K13126 PABPC; polyadenylate-binding protein 
E        110753333 ras GTPase-activating protein-binding protein 1 isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        110750360 putative G3BP-like protein isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        110750229 ras GTPase-activating protein-binding protein 2-like	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        110756990 putative G3BP-like protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        110745542 eukaryotic translation initiation factor 2A-like	K15026 EIF2A; translation initiation factor 2A 
E        110745545 eukaryotic translation initiation factor 2A-like	K15026 EIF2A; translation initiation factor 2A 
E        110760463 eukaryotic translation initiation factor 3 subunit B-like	K03253 EIF3B; translation initiation factor 3 subunit B 
E        110759451 eukaryotic initiation factor 4A-11	K03257 EIF4A; translation initiation factor 4A 
E        110759465 eukaryotic initiation factor 4A-7-like	K03257 EIF4A; translation initiation factor 4A 
E        110764799 eukaryotic initiation factor 4A-14-like	K03257 EIF4A; translation initiation factor 4A 
E        110766363 eukaryotic initiation factor 4A-I isoform X1	K03257 EIF4A; translation initiation factor 4A 
E        110749166 eukaryotic initiation factor 4A-2-like	K03257 EIF4A; translation initiation factor 4A 
E        110771016 eukaryotic initiation factor 4A-3-like	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        110754597 eukaryotic initiation factor 4A-3	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        110756957 eukaryotic translation initiation factor-like	K03260 EIF4G; translation initiation factor 4G 
E        110762576 eukaryotic translation initiation factor-like	K03260 EIF4G; translation initiation factor 4G 
E        110764156 eukaryotic translation initiation factor 4G	K03260 EIF4G; translation initiation factor 4G 
E        110745633 guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        110771289 tudor domain-containing protein 3	K18404 TDRD3; tudor domain-containing protein 3 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        110761435 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        110750028 mRNA-decapping enzyme-like protein	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        110767993 mRNA-decapping enzyme subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        110759294 DEAD-box ATP-dependent RNA helicase 8	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        110754810 enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        110768718 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        110761126 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        110749213 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        110768885 sm-like protein LSM1B	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        110771417 sm-like protein LSM2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        110763872 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        110773786 sm-like protein LSM3B	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        110761843 probable U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        110770676 sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        110756855 sm-like protein LSM36B	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        110764218 sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        110745250 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        110764825 sm-like protein LSM8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        110771075 5'-3' exoribonuclease 3 isoform X1	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        110759677 5'-3' exoribonuclease 4	K20553 XRN4; 5'-3' exoribonuclease 4 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
C    3'-5' decay
D      Core exosome factors
E        110754289 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
E        110773278 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        110773858 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        110766955 putative exosome complex component rrp40	K03681 RRP40; exosome complex component RRP40 
E        110755011 exosome complex component RRP41 homolog isoform X1	K11600 RRP41; exosome complex component RRP41 
E        110761155 exosome complex exonuclease RRP46 homolog	K12590 RRP46; exosome complex component RRP46 
E        110755393 exosome complex component RRP41-like	K12587 MTR3; exosome complex component MTR3 
E        110749950 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        110759784 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        110756159 exosome complex component RRP43	K12586 RRP43; exosome complex component RRP43 
E        110753943 exosome complex component RRP45A-like isoform X1	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        110748912 exosome complex exonuclease RRP44 homolog A	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        110757883 protein RRP6-like 2	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        110769177 protein RRP6-like 2 isoform X1	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        110762597 nuclear nucleic acid-binding protein C1D	K12592 C1D; exosome complex protein LRP1 
E        110770016 uncharacterized protein LOC110770016 isoform X1	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        110773292 non-canonical poly(A) RNA polymerase PAPD5	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        110766187 DExH-box ATP-dependent RNA helicase DExH10	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
E        110755321 DExH-box ATP-dependent RNA helicase DExH9	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        110762508 DExH-box ATP-dependent RNA helicase DExH11 isoform X1	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        110769604 tetratricopeptide repeat protein SKI3	K12600 SKI3; superkiller protein 3 
E        110774271 WD repeat-containing protein VIP3	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        110772750 carbon catabolite repressor protein 4 homolog 4 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        110749077 carbon catabolite repressor protein 4 homolog 1 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        110759574 carbon catabolite repressor protein 4 homolog 1-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        110751076 CCR4-NOT transcription complex subunit 1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        110773673 probable NOT transcription complex subunit VIP2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        110745899 CCR4-NOT transcription complex subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        110752737 uncharacterized protein LOC110752737 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        110744512 putative general negative regulator of transcription C16C9.04c	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        110771184 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110773606 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110751637 probable CCR4-associated factor 1 homolog 6	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110762608 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110756810 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110759995 putative CCR4-associated factor 1 homolog 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110752238 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110752241 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110757905 putative CCR4-associated factor 1 homolog 4	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110769658 probable CCR4-associated factor 1 homolog 11	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110772184 probable CCR4-associated factor 1 homolog 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110761692 probable CCR4-associated factor 1 homolog 9	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        110754639 CCR4-NOT transcription complex subunit 9-like	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        110764297 CCR4-NOT transcription complex subunit 9-like	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        110752857 CCR4-NOT transcription complex subunit 9-like	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        110752610 CCR4-NOT transcription complex subunit 10	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
E        110752646 CCR4-NOT transcription complex subunit 10-like	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
E        110766062 ABC transporter I family member 20	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        110757475 ABC transporter I family member 21	K12608 CAF16; CCR4-NOT complex subunit CAF16 
D      Pan complex
D      Other 3'-5' decay factors
E        110760175 poly(A)-specific ribonuclease PARN	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        110758825 uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        110758798 poly(A)-specific ribonuclease PARN-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        110774202 DExH-box ATP-dependent RNA helicase DExH1 isoform X1	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        110765437 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        110746856 DExH-box ATP-dependent RNA helicase DExH3	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        110765916 DExH-box ATP-dependent RNA helicase DExH6-like	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        110765999 DExH-box ATP-dependent RNA helicase DExH3	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        110744631 cell death-related nuclease 4-like isoform X1	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        110746625 protein NRDE2 homolog isoform X1	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        110756086 protein RST1 isoform X1	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        110772721 oligoribonuclease isoform X1	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
E        110750830 uncharacterized protein LOC110750830	K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] 
D      Other RNA degradosome components
E        110764720 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        110754102 enolase 1, chloroplastic	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        110753534 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        110762488 cytosolic enolase 3	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        110762927 polyribonucleotide nucleotidyltransferase 2, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        110745678 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        110768630 ATP-dependent 6-phosphofructokinase 2	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        110764725 ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        110744586 ATP-dependent 6-phosphofructokinase 5, chloroplastic	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        110761288 ATP-dependent 6-phosphofructokinase 6-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        110750966 ATP-dependent 6-phosphofructokinase 6-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        110746779 ATP-dependent 6-phosphofructokinase 6-like	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        110751165 heat shock 70 kDa protein, mitochondrial	K04043 dnaK; molecular chaperone DnaK 
E        110760068 heat shock 70 kDa protein, mitochondrial-like	K04043 dnaK; molecular chaperone DnaK 
E        110759034 ruBisCO large subunit-binding protein subunit beta, chloroplastic	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        110759454 chaperonin CPN60-like 2, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        110750914 chaperonin CPN60-2, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        110750077 chaperonin CPN60-2, mitochondrial-like	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
E        110757695 chaperonin 60 subunit beta 4, chloroplastic isoform X1	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        110773278 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        110773858 exosome complex component RRP4 homolog	K03679 RRP4; exosome complex component RRP4 
E        110754289 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        110755011 exosome complex component RRP41 homolog isoform X1	K11600 RRP41; exosome complex component RRP41 
E        110749950 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        110759784 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024