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Transfer RNA Biogenesis - Pseudomonas brassicacearum subsp. brassicacearum NFM421
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D PSEBR_a1795 Putative ribonuclease T(2) K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D PSEBR_a5145 putative tRNA cytidylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PSEBR_a3876 Glutamate--tRNA ligase (glutamyl-tRNA synthetase) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PSEBR_a1142 Proline--tRNA ligase (proline tRNA synthetase) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PSEBR_a4857 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PSEBR_a4951 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PSEBR_a4380 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSEBR_a3719 Glutamine--tRNA ligase (Glutaminyl-tRNA synthetase) K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PSEBR_a415 Putative arginine--tRNA ligase (Arginyl-tRNA synthetase), C-term K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PSEBR_a1024 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PSEBR_a4444 Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D PSEBR_a4310 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSEBR_a4080 Conserved hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSEBR_a3699 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PSEBR_a3559 Serine--tRNA ligase (seryl-tRNA synthetase) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PSEBR_a3718 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PSEBR_a4562 Valine--tRNA ligase (Valyl-tRNA synthetase) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PSEBR_a937 Histidine--tRNA ligase,(Histidyl-tRNA synthetase) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PSEBR_a3697 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PSEBR_a3696 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PSEBR_a5103 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PSEBR_a4646 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D PSEBR_a390 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D PSEBR_a2550 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PSEBR_a5112 putative HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D PSEBR_a5331 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PSEBR_a1132 Conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PSEBR_a3861 tRNA-pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PSEBR_a779 tRNA pseudouridine synthase B; TruB family pseudouridylate synthase (N terminal domain) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PSEBR_a1092 putative tRNA pseudouridine synthase D, Pseudouridine synthase, TruD family K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D PSEBR_a925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSEBR_a3942 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D PSEBR_a71 Conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PSEBR_a540 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PSEBR_a5662 putative tRNA modification GTPase, TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PSEBR_a5661 putative glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PSEBR_a1873 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D PSEBR_a300 Putative 3,5-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D PSEBR_a5664 putative ribonuclease, P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D PSEBR_a4393 Ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D PSEBR_a5528 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PSEBR_a1366 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D PSEBR_a1795 Putative ribonuclease T(2) K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D PSEBR_a5145 putative tRNA cytidylyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D PSEBR_a3483 Putative RNA 2-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
D PSEBR_a4877 Putative ABC transporter, ATP-binding component K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PSEBR_a4951 Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PSEBR_a1142 Proline--tRNA ligase (proline tRNA synthetase) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D PSEBR_a5103 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PSEBR_a4646 Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PSEBR_a3699 Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PSEBR_a4857 Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PSEBR_a1024 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PSEBR_a4310 Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSEBR_a4080 Conserved hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSEBR_a4562 Valine--tRNA ligase (Valyl-tRNA synthetase) K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PSEBR_a4380 Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSEBR_a3559 Serine--tRNA ligase (seryl-tRNA synthetase) K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PSEBR_a4444 Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PSEBR_a12 Glycine--tRNA ligase, alpha subunit (Glycyl-tRNA synthetase) K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PSEBR_a11 Glycine--tRNA ligase, beta subunit (Glycyl-tRNA synthetase) K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PSEBR_a3718 Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PSEBR_a3876 Glutamate--tRNA ligase (glutamyl-tRNA synthetase) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PSEBR_a3719 Glutamine--tRNA ligase (Glutaminyl-tRNA synthetase) K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PSEBR_a415 Putative arginine--tRNA ligase (Arginyl-tRNA synthetase), C-term K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PSEBR_a3697 phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PSEBR_a3696 phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PSEBR_a937 Histidine--tRNA ligase,(Histidyl-tRNA synthetase) K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PSEBR_a4810 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D PSEBR_a390 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PSEBR_a4403 Conserved hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D PSEBR_a980 putative deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D PSEBR_a1779 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PSEBR_a629 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PSEBR_a3872 tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
C Methylthiotransferases
D PSEBR_a4944 (Dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D PSEBR_a2574 conserved hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PSEBR_a982 Conserved hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PSEBR_a2567 Putative Methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PSEBR_a981 Conserved hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D PSEBR_a647 Putative methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D PSEBR_a4906 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PSEBR_a5331 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PSEBR_a992 tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PSEBR_a5662 putative tRNA modification GTPase, TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PSEBR_a922 putative tRNA/rRNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D PSEBR_a2608 Conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D PSEBR_a355 Putative RNA-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PSEBR_a1132 Conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PSEBR_a3861 tRNA-pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PSEBR_a779 tRNA pseudouridine synthase B; TruB family pseudouridylate synthase (N terminal domain) K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PSEBR_a1092 putative tRNA pseudouridine synthase D, Pseudouridine synthase, TruD family K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PSEBR_a1646 putative ribosomal subunit pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSEBR_a4194 Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D PSEBR_a3574 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PSEBR_a4270 tRNA 2-thiocytidine biosynthesis protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D PSEBR_a1737 sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PSEBR_a1343 Conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PSEBR_a3554 Putative sulfur relay protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PSEBR_a3553 Putative sulfur relay protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PSEBR_a3552 Putative sulfurtransferase, sulfur transfer complex K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PSEBR_a3555 Putative sulfur relay protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PSEBR_a927 putative iron-binding protein IscA; HesB family protein K13628 iscA; iron-sulfur cluster assembly protein
D PSEBR_a925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSEBR_a3942 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSEBR_a1335 Conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D PSEBR_a5661 putative glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PSEBR_a540 tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PSEBR_a3305 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D PSEBR_a1528 Putative 5-methylaminomethyl-2-thiouridine methyltransferase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D PSEBR_a915 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PSEBR_a4432 Putative transcription factor, ExsB family K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PSEBR_a3894 6-pyruvoyltetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PSEBR_a4433 Putative radical SAM-superfamily protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PSEBR_a1772 PreQ(1) synthase (7-cyano-7-deazaguanine reductase) K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PSEBR_a535 Conserved hypothetical protein; putative iron-sulfur binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PSEBR_a1873 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PSEBR_a1874 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D PSEBR_a916 tRNA-guanine transglycosylase, (queuine tRNA-ribosyltransferase) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PSEBR_a363 Putative thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PSEBR_a1082 putative Transcription factor, ExsB family K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PSEBR_a1035 putative O-sialoglycoprotein endopeptidase (putative glycoprotease-family protein) K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PSEBR_a71 Conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PSEBR_a5149 putative O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PSEBR_a537 Conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PSEBR_a1053 Conserved hypothetical protein; putative UBA/THIF-type NAD/FAD binding fold protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C PSEBR_a548 Exoribonuclease II (Ribonuclease R) K12573 rnr; ribonuclease R [EC:3.1.13.1]
C PSEBR_a781 Putative polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024