+D GENES KO
#
KEGG Orthology (KO) - Acidipropionibacterium acidipropionici ATCC 4875
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pbo00010]
D PACID_12410 Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D PACID_06420 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_04780 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D PACID_02270 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PACID_16670 Pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D PACID_07280 Fructose-1,6-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_31630 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_08260 Ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_07960 fbaA; Fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_08280 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PACID_13210 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PACID_13190 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PACID_09730 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PACID_13200 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PACID_08040 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_13140 Phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_08740 Phosphoglycerate mutase family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_01050 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_10000 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_12960 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PACID_07000 Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D PACID_15020 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PACID_12130 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_05170 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PACID_26150 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PACID_26160 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PACID_00350 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_00390 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_06750 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PACID_16510 Oxidoreductase, zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PACID_02980 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D PACID_13940 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_13950 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_15280 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D PACID_19220 pgm; Phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PACID_06490 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D PACID_06960 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D PACID_07420 Putative glycoside hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
C 00020 Citrate cycle (TCA cycle) [PATH:pbo00020]
D PACID_21030 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PACID_33270 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PACID_16330 acnA; Aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D PACID_24540 Isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PACID_19760 kgd; Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_26150 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PACID_26160 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PACID_24700 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PACID_24710 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PACID_06950 Propionyl-CoA:succinate coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PACID_18410 sdhA; Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PACID_21320 Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PACID_18420 Succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PACID_21310 Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PACID_18400 sdhC; Succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PACID_21330 Succinate dehydrogenase cytochrome B-558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PACID_33440 fumC; Fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PACID_24560 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PACID_00400 Pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D PACID_15020 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PACID_12130 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PACID_05170 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:pbo00030]
D PACID_06420 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PACID_22670 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PACID_22690 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D PACID_12620 6-phosphogluconate dehydrogenase (Decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PACID_23140 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PACID_17560 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PACID_04310 1-deoxy-D-xylulose-5-phosphate synthase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PACID_11490 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PACID_33960 tal; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PACID_09290 Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PACID_11430 Ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PACID_23070 Ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PACID_30280 deoC; Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D PACID_07040 Deoxyribose-phosphate aldolase 2 K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D PACID_00180 putative ribokinase protein K00852 rbsK; ribokinase [EC:2.7.1.15]
D PACID_30180 Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D PACID_19220 pgm; Phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PACID_09940 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PACID_12640 Shikimate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D PACID_03670 KHG/KDPG family aldolase/carbohydrate kinase, PfkB family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D PACID_07280 Fructose-1,6-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_31630 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_08260 Ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_07960 fbaA; Fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_04780 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D PACID_02270 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PACID_16670 Pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:pbo00040]
D PACID_03730 Uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D PACID_03800 Uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D PACID_03010 uxaC; Putative uronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D PACID_03710 Mannitol dehydrogenase domain-containing protein K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D PACID_03720 uxaA; Altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D PACID_03030 uxuA; Mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D PACID_03020 Mannitol dehydrogenase, C-terminal domain-containing protein K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D PACID_11170 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PACID_09400 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PACID_21110 Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D PACID_17560 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PACID_21100 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D PACID_11480 Ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D PACID_31580 Carbohydrate kinase, FGGY K00854 xylB; xylulokinase [EC:2.7.1.17]
D PACID_03470 Xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D PACID_03490 xylA; Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D PACID_06580 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D PACID_06570 Rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D PACID_06560 Rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D PACID_04280 Xylitol (Sorbitol) dehydrogenase K05351 E1.1.1.9; D-xylulose reductase [EC:1.1.1.9]
D PACID_30290 Alcohol dehydrogenase GroES domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_08230 Alcohol dehydrogenase GroES domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_00900 Oxidoreductase, zinc-binding dehydrogenase family protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_14120 Alcohol dehydrogenase GroES domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_30260 Oxidoreductase, zinc-binding dehydrogenase family protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_11390 Oxidoreductase, zinc-binding dehydrogenase family protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_31640 Alcohol dehydrogenase superfamily, zinc-containing K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_31610 Putative L-ribulose-5-phosphate 4-epimerase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D PACID_00880 Putative L-ribulose-5-phosphate 4-epimerase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:pbo00051]
D PACID_33020 PfkB domain-containing protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PACID_03660 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PACID_09040 Mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PACID_24310 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K01840 manB; phosphomannomutase [EC:5.4.2.8]
D PACID_24090 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PACID_31610 Putative L-ribulose-5-phosphate 4-epimerase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D PACID_00880 Putative L-ribulose-5-phosphate 4-epimerase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D PACID_06580 rhaI; L-rhamnose isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-]
D PACID_06570 Rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D PACID_06560 Rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_04780 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D PACID_02270 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PACID_16670 Pyrophosphate--fructose-6-phosphate 1-phosphotransferase K00895 pfp; diphosphate-dependent phosphofructokinase [EC:2.7.1.90]
D PACID_30290 Alcohol dehydrogenase GroES domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_08230 Alcohol dehydrogenase GroES domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_00900 Oxidoreductase, zinc-binding dehydrogenase family protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_14120 Alcohol dehydrogenase GroES domain-containing protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_30260 Oxidoreductase, zinc-binding dehydrogenase family protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_11390 Oxidoreductase, zinc-binding dehydrogenase family protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_31640 Alcohol dehydrogenase superfamily, zinc-containing K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D PACID_03490 xylA; Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D PACID_07280 Fructose-1,6-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_31630 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_08260 Ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_07960 fbaA; Fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_08280 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PACID_13210 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PACID_31560 Levanase K03332 fruA; fructan beta-fructosidase [EC:3.2.1.80]
D PACID_11430 Ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PACID_23070 Ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D PACID_04770 Phosphotransferase system K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D PACID_14130 PTS system, mannitol-specific IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D PACID_05470 Putative phosphatase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D PACID_21780 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D PACID_08200 PTS system glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D PACID_08190 PTS family glucitol (Glu) porter component IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D PACID_21770 PTS system, glucitol/sorbitol-specific IIB component and second of two IIC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D PACID_21760 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D PACID_08180 PTS system, glucitol/sorbitol-specific enzyme II, C2 component K02783 srlA; glucitol/sorbitol PTS system EIIC component
C 00052 Galactose metabolism [PATH:pbo00052]
D PACID_15280 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D PACID_30820 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PACID_26600 GHMP kinase, N-terminal domain-containing protein K00849 galK; galactokinase [EC:2.7.1.6]
D PACID_01690 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PACID_03890 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PACID_09400 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PACID_19220 pgm; Phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PACID_12410 Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D PACID_00360 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PACID_03910 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PACID_05380 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D PACID_06080 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D PACID_07300 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_03120 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_06900 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_32100 Glycoside hydrolase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_08110 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D PACID_00930 Phosphoenolpyruvate-dependent sugar phosphotransferase system K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D PACID_08140 PTS system, Lactose/Cellobiose specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D PACID_00910 PTS system, Lactose/Cellobiose specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D PACID_08130 PTS system Galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D PACID_00920 PTS system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_04780 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D PACID_02270 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PACID_33010 Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D PACID_31870 Glycosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PACID_32020 Glycosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PACID_31800 Oligo-1,6-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
C 00053 Ascorbate and aldarate metabolism [PATH:pbo00053]
D PACID_11170 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PACID_21110 Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
C 00500 Starch and sucrose metabolism [PATH:pbo00500]
D PACID_33010 Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D PACID_31870 Glycosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PACID_32020 Glycosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D PACID_13830 Alpha amylase, catalytic domain-containing protein K05341 E2.4.1.4; amylosucrase [EC:2.4.1.4]
D PACID_09400 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PACID_31860 Glycoside hydrolase family 3 domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_19970 Putative thermostable beta-glucosidase (Glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_01920 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_18180 Beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D PACID_07420 Putative glycoside hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D PACID_11700 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D PACID_30710 Family 13 glycosyl hydrolase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PACID_19160 glgB; 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PACID_19130 glgP; Phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D PACID_19100 Glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D PACID_11160 Alpha amylase, catalytic domain-containing protein K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D PACID_31800 Oligo-1,6-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D PACID_23940 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D PACID_19150 aminoglycoside phosphotransferase K16146 pep2; maltokinase [EC:2.7.1.175]
D PACID_19140 Alpha amylase, catalytic domain-containing protein K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D PACID_11690 Glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D PACID_05880 Malto-oligosyltrehalose synthase K06044 treY; (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase [EC:5.4.99.15]
D PACID_05850 Malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D PACID_18560 Alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D PACID_18450 Trehalose_PPase multi-domain protein K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D PACID_18570 Trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D PACID_31390 Kojibiose phosphorylase K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D PACID_19190 Glycosyl hydrolase family 65 central catalytic domain-containing protein K05342 treP; alpha,alpha-trehalose phosphorylase [EC:2.4.1.64]
D PACID_19220 pgm; Phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PACID_12410 Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D PACID_06420 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PACID_33020 PfkB domain-containing protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pbo00520]
D PACID_13280 Beta-N-acetylglucosaminidase (Putative secreted protein) K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PACID_33320 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D PACID_09250 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D PACID_09160 Glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D PACID_33020 PfkB domain-containing protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PACID_25100 glmS; Glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PACID_25140 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D PACID_09930 glmU; Bifunctional protein glmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PACID_14160 UDP-N-acetylglucosamine diphosphorylase K00972 UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase [EC:2.7.7.23 2.7.7.83]
D PACID_01180 putative sugar phosphate isomerase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D PACID_16910 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PACID_26010 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PACID_01140 N-acylglucosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D PACID_04880 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D PACID_04710 Bacterial transferase hexapeptide repeat protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D PACID_21220 abfA; Alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D PACID_33830 Alpha-L-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55]
D PACID_12410 Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D PACID_06490 ROK family protein K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D PACID_19220 pgm; Phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PACID_09400 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PACID_11170 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PACID_30820 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PACID_26600 GHMP kinase, N-terminal domain-containing protein K00849 galK; galactokinase [EC:2.7.1.6]
D PACID_01690 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PACID_03890 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PACID_06420 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PACID_03660 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PACID_09040 Mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PACID_24310 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K01840 manB; phosphomannomutase [EC:5.4.2.8]
D PACID_24090 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PACID_11700 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:pbo00620]
D PACID_13940 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_13950 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_05170 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PACID_26150 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PACID_26160 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PACID_15020 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PACID_12130 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_06750 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PACID_16510 Oxidoreductase, zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PACID_12960 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PACID_24270 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D PACID_02140 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D PACID_02980 Aldehyde dehydrogenase (NAD(+)) K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D PACID_06950 Propionyl-CoA:succinate coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PACID_00350 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_00390 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_21650 Thiamine pyrophosphate enzyme K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D PACID_13020 FAD linked oxidase protein K18930 dld; D-lactate dehydrogenase
D PACID_06550 Succinate-semialdehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D PACID_17930 Metallo-beta-lactamase domain-containing protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PACID_02100 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D PACID_00380 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D PACID_02190 Sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D PACID_00400 Pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D PACID_24560 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PACID_33440 fumC; Fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PACID_16740 hypothetical protein K20370 PEPCK; phosphoenolpyruvate carboxykinase (diphosphate) [EC:4.1.1.38]
D PACID_07000 Pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D PACID_20580 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D PACID_14380 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pbo00630]
D PACID_13940 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_13950 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_24560 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PACID_21030 Citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PACID_33270 Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PACID_16330 acnA; Aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D PACID_19260 mce; Methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D PACID_24180 Carboxyl transferase domain-containing protein K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D PACID_24270 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D PACID_11200 mutA; Methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_11210 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_32520 FAD linked oxidase domain-containing protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D PACID_29570 Catalase K03781 katE; catalase [EC:1.11.1.6]
D PACID_32730 4-phosphoerythronate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D PACID_06940 Hydrolase, haloacid dehalogenase-like family protein K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D PACID_11930 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_12010 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_08340 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PACID_12690 gcsP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PACID_12710 gcsT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_12700 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D PACID_16610 gcvH; Glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
D PACID_33600 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PACID_12190 TIGR00045 multi-domain protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PACID_06550 Succinate-semialdehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D PACID_19760 kgd; Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D PACID_24550 Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:pbo00640]
D PACID_13940 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_13950 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_31120 pdhA; Pyruvate dehydrogenase E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PACID_31110 Transketolase, pyridine binding domain-containing protein K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PACID_31100 Biotin-requiring enzyme K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_24270 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D PACID_07970 Methylmalonyl-CoA:Pyruvate transcarboxylase 5S subunit K03416 E2.1.3.1-5S; methylmalonyl-CoA carboxyltransferase 5S subunit [EC:2.1.3.1]
D PACID_07980 Biotin dependent transcarboxylase 12S subunit K17489 E2.1.3.1-12S; methylmalonyl-CoA carboxyltransferase 12S subunit [EC:2.1.3.1]
D PACID_07990 C-terminal of methylmalonyl-CoA carboxyltransferase K17489 E2.1.3.1-12S; methylmalonyl-CoA carboxyltransferase 12S subunit [EC:2.1.3.1]
D PACID_08000 bccP; Biotin dependent transcarboxylase 1.3S subunit K17490 E2.1.3.1-1.3S; methylmalonyl-CoA carboxyltransferase 1.3S subunit [EC:2.1.3.1]
D PACID_31250 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PACID_11850 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PACID_24180 Carboxyl transferase domain-containing protein K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D PACID_19260 mce; Methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D PACID_11200 mutA; Methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_11210 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_24710 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PACID_24700 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PACID_01320 iolA; Methylmalonate semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PACID_34160 mmsA; Methylmalonate-semialdehyde dehydrogenase (Acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PACID_00350 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_00390 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:pbo00650]
D PACID_02190 Sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D PACID_02180 Putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D PACID_02170 OAD_gamma domain-containing protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D PACID_31330 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D PACID_18410 sdhA; Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PACID_21320 Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PACID_18420 Succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PACID_21310 Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PACID_18400 sdhC; Succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PACID_21330 Succinate dehydrogenase cytochrome B-558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PACID_18390 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PACID_31250 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PACID_11850 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PACID_02230 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_31260 Succinate-semialdehyde dehydrogenase (NAD(P)+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_33630 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_06950 Propionyl-CoA:succinate coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D PACID_05170 nifJ; Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D PACID_26150 2-oxoglutarate oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D PACID_26160 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D PACID_20670 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_00370 Thiamine pyrophosphate protein TPP binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_20650 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PACID_07140 budA; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
C 00660 C5-Branched dibasic acid metabolism [PATH:pbo00660]
D PACID_20670 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_00370 Thiamine pyrophosphate protein TPP binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_20650 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PACID_07140 budA; Alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5]
D PACID_24710 sucC; Succinyl-CoA ligase [ADP-forming] subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D PACID_24700 sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D PACID_20510 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PACID_20500 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PACID_20600 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pbo00562]
D PACID_09380 putative myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PACID_34070 Myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PACID_34140 Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PACID_25880 Oxidoreductase domain-containing protein K22230 iolU; scyllo-inositol 2-dehydrogenase (NADP+) [EC:1.1.1.-]
D PACID_34040 iolE; Inosose dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D PACID_34150 xylose isomerase domain-containing protein K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D PACID_09330 Epi-inositol hydrolase K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D PACID_09320 iolB; Myo-inositol catabolism protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D PACID_09300 Carbohydrate kinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D PACID_01320 iolA; Methylmalonate semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PACID_34160 mmsA; Methylmalonate-semialdehyde dehydrogenase (Acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PACID_08280 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PACID_13210 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pbo00190]
D PACID_26410 NADH-quinone oxidoreductase subunit K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D PACID_26400 nuoB; NADH-quinone oxidoreductase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PACID_26140 NADH ubiquinone oxidoreductase, subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D PACID_26390 nuoC; NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D PACID_26130 Complex1_30kDa multi-domain protein K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D PACID_28420 Respiratory-chain NADH dehydrogenase, 49 Kd subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D PACID_26380 nuoD; NADH-quinone oxidoreductase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D PACID_26370 nuoE; NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D PACID_26360 NADH oxidoreductase (Quinone), F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D PACID_26350 NADH-quinone oxidoreductase K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D PACID_26340 nuoH; NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PACID_26330 nuoI; NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PACID_26120 4Fe-4S binding domain-containing protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PACID_26320 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PACID_26310 nuoK; NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PACID_26300 NADH-ubiquinone oxidoreductase chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PACID_26290 Proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PACID_26280 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PACID_04960 Pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D PACID_18410 sdhA; Succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PACID_21320 Succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D PACID_18420 Succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PACID_21310 Succinate dehydrogenase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D PACID_18400 sdhC; Succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PACID_21330 Succinate dehydrogenase cytochrome B-558 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D PACID_12270 Tat (Twin-arginine translocation) pathway signal sequence K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D PACID_12260 Cytochrome b/b6 family protein K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D PACID_12280 Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D PACID_22660 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PACID_12230 Cytochrome c oxidase subunit IV K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D PACID_12290 Cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D PACID_12210 coxB; Cytochrome c oxidase subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D PACID_11810 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_22650 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_05290 Cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PACID_05280 cydB; Cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PACID_19370 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PACID_19350 atpB; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PACID_19360 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PACID_19380 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PACID_19340 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PACID_19410 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PACID_19390 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PACID_19400 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PACID_28530 Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PACID_27580 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:pbo00680]
D PACID_08340 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PACID_01050 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_10000 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_24560 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PACID_07280 Fructose-1,6-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_31630 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_08260 Ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_07960 fbaA; Fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_04780 pfkB; 1-phosphofructokinase K16370 pfkB; 6-phosphofructokinase 2 [EC:2.7.1.11]
D PACID_02270 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D PACID_13940 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_13950 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_08040 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_13140 Phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_08740 Phosphoglycerate mutase family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_19890 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_31600 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_08240 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_09240 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PACID_06970 Phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:pbo00910]
D PACID_02670 Transporter, major facilitator family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D PACID_02700 narG; Nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D PACID_02710 narH; Nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D PACID_02730 Respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D PACID_33080 Nitrite reductase (NAD(P)H), small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D PACID_02330 Putative nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D PACID_31710 Nitric oxide reductase K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D PACID_27170 Nitric-oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D PACID_02630 Hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D PACID_22010 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PACID_11930 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_12010 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_18210 Glutamate synthase [NADPH], large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PACID_18200 gltD; Glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PACID_05500 arcC; Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D PACID_16140 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:pbo00920]
D PACID_12570 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PACID_12580 Binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D PACID_12590 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PACID_26670 Flavin reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D PACID_01730 cysN; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PACID_01720 cysD; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PACID_01710 cysH; Putative phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D PACID_27260 Sulfite reductase (Ferredoxin) K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D PACID_01910 DoxX protein K16937 doxD; thiosulfate dehydrogenase (quinone) large subunit [EC:1.8.5.2]
D PACID_04950 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PACID_19440 Hexapeptide transferase family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PACID_24870 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PACID_18580 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PACID_16990 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PACID_08440 metB; Cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase) K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pbo00061]
D PACID_24270 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D PACID_14960 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D PACID_14980 [acyl-carrier-protein] S-malonyltransferase family protein K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PACID_14970 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PACID_14950 3-oxoacyl-[acyl-carrier-protein] synthase 1 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PACID_09650 3-oxoacyl-(Acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PACID_22340 Putative oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PACID_00240 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PACID_23190 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_23200 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_32400 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_19490 Putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pbo00071]
D PACID_23190 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_23200 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_32400 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_19490 Putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_32500 Ferredoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D PACID_29640 Reductase, ferredoxin K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D PACID_06750 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:pbo00561]
D PACID_33600 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PACID_12190 TIGR00045 multi-domain protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PACID_16510 Oxidoreductase, zinc-binding dehydrogenase family protein K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D PACID_26550 dhaK; DhaK PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D PACID_26560 dhaL; Dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D PACID_26570 pptE; Phosphoenolpyruvate-protein phosphoryltransferase PptE K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D PACID_33710 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PACID_20910 HAD hydrolase, family IIA K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D PACID_32440 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_12420 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_12430 Phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_20710 Diacylglycerol kinase catalytic region K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PACID_07300 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_03120 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_06900 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_32100 Glycoside hydrolase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:pbo00564]
D PACID_08150 Glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D PACID_00970 Glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D PACID_27900 Glycerol-3-phosphate dehydrogenase (NAD(P)+) K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D PACID_32710 glpA; Glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D PACID_32700 glpB; Glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D PACID_32690 glpC; Glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D PACID_32440 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_12420 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_12430 Phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_07800 Cytidyltransferase-related protein domain-containing protein K00980 tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]
D PACID_20710 Diacylglycerol kinase catalytic region K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PACID_30750 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PACID_03140 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D PACID_26250 Ethanolamine ammonia-lyase, large subunit K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D PACID_26240 eutC; Ethanolamine ammonia-lyase small subunit K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D PACID_22030 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PACID_15200 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D PACID_16540 CDP-alcohol phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D PACID_24790 Cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D PACID_16570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
D PACID_21800 3-dehydroquinate synthase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
D PACID_11470 3-dehydroquinate synthase K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:pbo00600]
D PACID_00360 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PACID_03910 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PACID_07300 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_03120 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_06900 Alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_32100 Glycoside hydrolase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D PACID_33320 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D PACID_30310 Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pbo00230]
D PACID_19220 pgm; Phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PACID_09940 Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PACID_27130 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PACID_27330 Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D PACID_24630 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PACID_27200 purL; Phosphoribosylformylglycinamidine synthase 2 K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D PACID_27280 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D PACID_27270 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PACID_27120 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D PACID_24140 purK; Phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D PACID_24130 Phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D PACID_27320 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PACID_24620 Bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PACID_17980 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PACID_32030 5'-Nucleotidase domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PACID_26640 putative sugar phosphatase/hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D PACID_24300 Purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D PACID_12890 yfiH; Membrane protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PACID_28500 hpt; Hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D PACID_24900 IMP dehydrogenase family protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PACID_24910 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PACID_13260 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PACID_23840 tRNA nucleotidyltransferase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D PACID_25290 Glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_24860 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_23750 Putative glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_03380 Glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_12240 IMP dehydrogenase family protein K26110 guaB1; GMP reductase [EC:1.7.1.7]
D PACID_13720 CMP/dCMP deaminase zinc-binding protein K01487 guaD; guanine deaminase [EC:3.5.4.3]
D PACID_17690 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D PACID_16010 Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PACID_00460 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D PACID_18500 Deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D PACID_17960 GTP Pyrophosphokinase, (P)ppGpp synthetase I K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PACID_10030 Ppx/GppA phosphatase family protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D PACID_13660 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PACID_27370 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PACID_33280 Adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D PACID_25430 kad; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PACID_16530 Putative HIT family protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D PACID_01730 cysN; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PACID_01720 cysD; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PACID_05620 putative Asp/Glu racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3]
D PACID_05590 Allantoinase K01466 allB; allantoinase [EC:3.5.2.5]
D PACID_05570 Amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9]
D PACID_05580 Aminotransferase class V K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D PACID_05500 arcC; Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:pbo00240]
D PACID_15090 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PACID_15080 carA; Carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PACID_33560 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PACID_15070 Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PACID_15110 pyrD; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D PACID_15100 Oxidoreductase, FAD-binding protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D PACID_05160 Dihydroorotate dehydrogenase K00226 pyrD; dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
D PACID_15130 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D PACID_15120 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D PACID_22050 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D PACID_13260 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PACID_24200 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D PACID_20840 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D PACID_17480 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D PACID_24430 Putative uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D PACID_32030 5'-Nucleotidase domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PACID_26640 putative sugar phosphatase/hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D PACID_30650 upp; Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D PACID_15060 Bifunctional protein pyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PACID_24460 Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D PACID_00460 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D PACID_16020 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D PACID_16010 Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D PACID_26580 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D PACID_28860 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D PACID_16250 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PACID_20570 pdp; Pyrimidine-nucleoside phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D PACID_23830 tysY; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pbo00250]
D PACID_18360 nadB; L-aspartate oxidase (LASPO) (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PACID_23320 racX; Aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D PACID_23450 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D PACID_27230 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PACID_19460 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PACID_19520 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PACID_33150 Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D PACID_22280 aspA; Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D PACID_06740 Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D PACID_30900 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PACID_20300 arlY; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PACID_13660 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PACID_27370 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PACID_27320 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PACID_33560 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PACID_18390 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PACID_31250 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PACID_11850 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PACID_02230 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_31260 Succinate-semialdehyde dehydrogenase (NAD(P)+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_33630 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_18210 Glutamate synthase [NADPH], large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PACID_18200 gltD; Glutamate synthase small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D PACID_22010 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PACID_11380 Proline dehydrogenase/aldehyde dehydrogenase (NAD) family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PACID_11930 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_12010 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_15090 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PACID_15080 carA; Carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PACID_27270 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PACID_25100 glmS; Glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PACID_27130 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pbo00260]
D PACID_06200 aspartate kinase, monofunctional K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PACID_28040 Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PACID_19700 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PACID_19690 thrB; Homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D PACID_17950 putative threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PACID_17170 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D PACID_08340 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PACID_33600 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PACID_12190 TIGR00045 multi-domain protein K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D PACID_08040 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_13140 Phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_08740 Phosphoglycerate mutase family protein K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_19890 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_31600 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_08240 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_09240 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PACID_06970 Phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D PACID_08660 kbl; Glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D PACID_08650 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D PACID_28750 FAD dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PACID_12690 gcsP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PACID_12710 gcsT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_12700 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D PACID_16610 gcvH; Glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
D PACID_07730 betA; Choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D PACID_07740 gbsA; Betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D PACID_08600 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PACID_27870 Threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PACID_18230 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PACID_18240 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PACID_31230 Xaa-Pro aminopeptidase K15783 doeA; ectoine hydrolase [EC:3.5.4.44]
C 00270 Cysteine and methionine metabolism [PATH:pbo00270]
D PACID_19440 Hexapeptide transferase family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PACID_24870 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PACID_18580 cysK; Cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PACID_30430 Aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D PACID_29230 mmuM; homocysteine methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]
D PACID_17540 metH; Methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PACID_00410 Methionine synthase II (Cobalamin-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PACID_17660 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PACID_16700 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D PACID_12890 yfiH; Membrane protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PACID_00950 Modification methylase NaeI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PACID_09020 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D PACID_06200 aspartate kinase, monofunctional K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PACID_28040 Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PACID_19700 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PACID_16990 Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D PACID_08440 metB; Cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase) K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PACID_20590 ilvE; Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PACID_04950 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PACID_00350 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_00390 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_24560 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D PACID_08600 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D PACID_19890 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_31600 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_08240 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_09240 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:pbo00280]
D PACID_20590 ilvE; Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PACID_31120 pdhA; Pyruvate dehydrogenase E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PACID_31110 Transketolase, pyridine binding domain-containing protein K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PACID_31100 Biotin-requiring enzyme K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_24180 Carboxyl transferase domain-containing protein K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D PACID_24270 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain-containing protein K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D PACID_19260 mce; Methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D PACID_11200 mutA; Methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_11210 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_01320 iolA; Methylmalonate semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PACID_34160 mmsA; Methylmalonate-semialdehyde dehydrogenase (Acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PACID_11850 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pbo00290]
D PACID_27870 Threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PACID_20510 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PACID_20500 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PACID_20600 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PACID_20670 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_00370 Thiamine pyrophosphate protein TPP binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_20650 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PACID_20640 Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PACID_27860 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PACID_20590 ilvE; Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PACID_20580 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D PACID_14380 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pbo00300]
D PACID_19700 Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PACID_06200 aspartate kinase, monofunctional K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PACID_28040 Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PACID_11740 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PACID_21670 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PACID_11640 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D PACID_24360 Acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PACID_20320 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PACID_32510 Aminotransferase class I and II K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D PACID_11650 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PACID_15950 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PACID_19720 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PACID_03940 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PACID_34190 Aminotransferase, class I/II K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D PACID_31220 Aminotransferase, class I and II family protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D PACID_12800 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PACID_12810 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:pbo00310]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_11850 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PACID_02230 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_31260 Succinate-semialdehyde dehydrogenase (NAD(P)+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_33630 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:pbo00220]
D PACID_20310 Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PACID_30900 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PACID_20300 arlY; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PACID_24220 Arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D PACID_27270 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PACID_11930 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_12010 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_22010 NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D PACID_05500 arcC; Carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D PACID_20340 Arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D PACID_20330 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D PACID_20350 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PACID_24360 Acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PACID_20320 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:pbo00330]
D PACID_28750 FAD dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PACID_06830 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PACID_17250 Ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D PACID_28030 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PACID_06760 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PACID_28060 Proline dehydrogenase K00318 PRODH; proline dehydrogenase [EC:1.5.5.2]
D PACID_11380 Proline dehydrogenase/aldehyde dehydrogenase (NAD) family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PACID_13350 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PACID_13360 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D PACID_14260 pip; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D PACID_24420 Proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D PACID_24380 D-proline reductase (Dithiol) K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D PACID_24400 D-proline reductase, PrdB subunit K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00340 Histidine metabolism [PATH:pbo00340]
D PACID_20980 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PACID_20990 his2; Phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D PACID_18290 his3; Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D PACID_18060 his4; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D PACID_18070 hisH; Imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PACID_20690 hisF; Imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PACID_18080 his7; Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D PACID_01090 Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_18090 his8; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_19880 Histidinol-phosphate phosphatase HisN K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D PACID_18100 hisX; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D PACID_28750 FAD dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:pbo00350]
D PACID_01090 Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_18090 his8; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_28750 FAD dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PACID_06750 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D PACID_02230 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_31260 Succinate-semialdehyde dehydrogenase (NAD(P)+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_33630 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_13100 TIGR03083 family protein K16163 K16163; maleylpyruvate isomerase [EC:5.2.1.4]
C 00360 Phenylalanine metabolism [PATH:pbo00360]
D PACID_28750 FAD dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PACID_01090 Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_18090 his8; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_29720 catalase/hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D PACID_06830 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PACID_22490 Rieske [2Fe-2S] domain-containing protein K05710 hcaC; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin component
D PACID_32500 Ferredoxin reductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D PACID_29640 Reductase, ferredoxin K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:pbo00380]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_28750 FAD dependent oxidoreductase K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D PACID_06830 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PACID_29570 Catalase K03781 katE; catalase [EC:1.11.1.6]
D PACID_29720 catalase/hydroperoxidase HPI(I) K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D PACID_21950 Multicopper oxidase type 2 K20219 phsA; o-aminophenol oxidase [EC:1.10.3.4]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pbo00400]
D PACID_12460 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PACID_17740 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D PACID_23980 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PACID_17750 aroK; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PACID_19850 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D PACID_17760 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PACID_18280 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PACID_12310 trpD; Anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PACID_18060 his4; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D PACID_18250 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PACID_18230 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PACID_18240 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PACID_24880 Chorismate mutase K04092 tyrA1; chorismate mutase [EC:5.4.99.5]
D PACID_17490 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PACID_31040 pheA; Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D PACID_01090 Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_18090 his8; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pbo00410]
D PACID_18390 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PACID_31250 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PACID_11850 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PACID_30130 Aminotransferase class-III K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
D PACID_01320 iolA; Methylmalonate semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D PACID_34160 mmsA; Methylmalonate-semialdehyde dehydrogenase (Acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:pbo00430]
D PACID_18390 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PACID_33150 Alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D PACID_30130 Aminotransferase class-III K15372 toa; taurine---2-oxoglutarate transaminase [EC:2.6.1.55]
C 00440 Phosphonate and phosphinate metabolism
D PACID_08590 Beta-lactamase domain-containing protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:pbo00450]
D PACID_08440 metB; Cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase) K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PACID_30430 Aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D PACID_17540 metH; Methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PACID_00410 Methionine synthase II (Cobalamin-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D PACID_22470 Cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D PACID_33850 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PACID_05070 Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PACID_01730 cysN; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PACID_01720 cysD; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PACID_24440 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pbo00460]
D PACID_31860 Glycoside hydrolase family 3 domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_19970 Putative thermostable beta-glucosidase (Glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_01920 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_18180 Beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D PACID_27230 ansA; L-asparaginase I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PACID_08340 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pbo00470]
D PACID_31080 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PACID_20480 D-alanine--D-alanine ligase 1 K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_34210 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_27270 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PACID_23860 Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PACID_12830 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PACID_23320 racX; Aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D PACID_23450 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D PACID_15950 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PACID_19720 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PACID_03940 Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PACID_24420 Proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D PACID_24380 D-proline reductase (Dithiol) K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D PACID_24400 D-proline reductase, PrdB subunit K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00480 Glutathione metabolism [PATH:pbo00480]
D PACID_09810 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D PACID_23120 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PACID_27250 Membrane alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PACID_24540 Isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PACID_12620 6-phosphogluconate dehydrogenase (Decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PACID_23140 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PACID_22670 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PACID_05060 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:pbo00515]
D PACID_09850 Dolichyl-phosphate-mannose-protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:pbo00514]
D PACID_09850 Dolichyl-phosphate-mannose-protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:pbo00511]
D PACID_00360 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PACID_03910 Beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D PACID_33320 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D PACID_31150 Glycosyl hydrolase family 38 N-terminal domain-containing protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D PACID_31170 Alpha-1,3/4-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
C 00540 Lipopolysaccharide biosynthesis
D PACID_30170 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
C 00542 O-Antigen repeat unit biosynthesis [PATH:pbo00542]
D PACID_19630 Glycosyltransferase, group 4 family K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pbo00541]
D PACID_09400 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D PACID_01690 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PACID_03890 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PACID_11170 UDP-glucose dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PACID_05770 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_26590 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_05760 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PACID_05750 rfbC; dTDP-4-dehydrorhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D PACID_03660 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PACID_09040 Mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D PACID_24310 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K01840 manB; phosphomannomutase [EC:5.4.2.8]
D PACID_24090 Mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PACID_09930 glmU; Bifunctional protein glmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PACID_04880 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D PACID_04710 Bacterial transferase hexapeptide repeat protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:pbo00550]
D PACID_16910 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PACID_26010 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PACID_12860 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PACID_12830 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PACID_12800 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PACID_20480 D-alanine--D-alanine ligase 1 K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_34210 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_12810 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PACID_30070 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PACID_32290 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PACID_12820 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PACID_12850 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PACID_12790 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PACID_05690 Penicillin-binding protein, transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A
D PACID_28520 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PACID_11580 Beta-lactamase K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D PACID_23720 Mur ligase middle domain-containing protein K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D PACID_23730 CobB/CobQ-like protein K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:pbo00552]
D PACID_30070 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PACID_32290 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PACID_19630 Glycosyltransferase, group 4 family K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D PACID_05830 Putative LytR family regulatory protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:pbo00543]
D PACID_04640 Glycosyltransferase, group 1 family K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
D PACID_04650 Glycosyltransferase, group 1 family K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
D PACID_04690 Glycosyl transferases group 1-like protein K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
D PACID_19630 Glycosyltransferase, group 4 family K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D PACID_16460 Glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D PACID_19440 Hexapeptide transferase family protein K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PACID_24870 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PACID_07860 Putative glycosyl transferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
D PACID_24110 Succinoglycan biosynthesis protein ExoA K16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pbo00730]
D PACID_33460 Phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D PACID_02820 thiD; Phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D PACID_19090 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PACID_16340 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PACID_01890 thiG; Thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D PACID_12510 Thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PACID_02830 thiE; Thiamine-phosphate pyrophosphorylase 1 K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PACID_20450 thiL; Thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D PACID_19860 rsgA; Ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PACID_25430 kad; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:pbo00740]
D PACID_24650 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PACID_24670 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PACID_24640 risB; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PACID_24660 Riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PACID_21700 ribF; Riboflavin biosynthesis protein RibF (Riboflavin kinase) K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D PACID_26670 Flavin reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
C 00750 Vitamin B6 metabolism [PATH:pbo00750]
D PACID_16920 pdxY; Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D PACID_24250 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D PACID_09240 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PACID_17950 putative threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D PACID_18610 Pyridoxal biosynthesis lyase pdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D PACID_18620 Glutamine amidotransferase subunit pdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pbo00760]
D PACID_18360 nadB; L-aspartate oxidase (LASPO) (Quinolinate synthetase B) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PACID_18370 nadA; Quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D PACID_18350 nadC; Nicotinate-nucleotide pyrophosphorylase [carboxylating] (Nicotinate-nucleotide:diphosphate phospho-alpha-D-ribosyltransferase(Carboxylating)) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D PACID_23920 Nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D PACID_24300 Purine nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D PACID_32030 5'-Nucleotidase domain-containing protein K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D PACID_26640 putative sugar phosphatase/hydrolase K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D PACID_13380 nadD; Nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D PACID_19470 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D PACID_33070 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D PACID_15210 Competence/damage-inducible protein CinA protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D PACID_29440 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D PACID_20860 ppnK; putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D PACID_11560 pntA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PACID_11570 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D PACID_31330 Asp/Glu racemase K01799 nicE; maleate isomerase [EC:5.2.1.1]
D PACID_02230 Succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_31260 Succinate-semialdehyde dehydrogenase (NAD(P)+) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D PACID_33630 NAD-dependent aldehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:pbo00770]
D PACID_20670 Acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_00370 Thiamine pyrophosphate protein TPP binding domain-containing protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PACID_20650 ilvH; Acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PACID_20640 Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PACID_27860 Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PACID_01340 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PACID_17130 Putative 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PACID_14990 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PACID_28390 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D PACID_25120 coaA; Pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D PACID_17670 Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D PACID_21570 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D PACID_13050 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D PACID_25090 acpS; Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D PACID_20590 ilvE; Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:pbo00780]
D PACID_14950 3-oxoacyl-[acyl-carrier-protein] synthase 1 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PACID_09650 3-oxoacyl-(Acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PACID_22340 Putative oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PACID_00240 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PACID_10240 Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D PACID_24170 Biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pbo00785]
D PACID_12120 lipB; lipB, lipoyl(octanoyl) transferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PACID_12090 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PACID_01040 lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_15020 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D PACID_12130 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PACID_19760 kgd; Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D PACID_31120 pdhA; Pyruvate dehydrogenase E1 component, alpha subunit K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D PACID_31110 Transketolase, pyridine binding domain-containing protein K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D PACID_31100 Biotin-requiring enzyme K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D PACID_12690 gcsP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PACID_12710 gcsT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PACID_12700 Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D PACID_16610 gcvH; Glycine cleavage system H protein 2 K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pbo00790]
D PACID_28480 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PACID_28460 folB; Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D PACID_28450 folK; Putative hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PACID_08730 Dihydropteroate synthase ((2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase) K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PACID_28470 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PACID_23820 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PACID_13240 Bifunctional protein FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D PACID_24650 ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PACID_05670 pabA; Glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D PACID_32860 Aminotransferase, class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D PACID_28710 Branched-chain amino acid aminotransferase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D PACID_29000 Aminotransferase, class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D PACID_03060 Branched-chain amino acid aminotransferase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D PACID_02750 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PACID_02790 moaC; Molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PACID_02770 moaE; Molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PACID_02780 Molybdenum cofactor biosynthesis protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D PACID_09460 moeA; MoeA N-terminal region (Domain I and II) K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:pbo00670]
D PACID_23820 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D PACID_01400 Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D PACID_24600 folD; Bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PACID_08340 glyA; Serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PACID_24630 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PACID_24620 Bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PACID_17580 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PACID_12710 gcsT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PACID_17540 metH; Methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PACID_23830 tysY; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D PACID_24550 Formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PACID_12530 metF; Methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PACID_09450 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pbo00860]
D PACID_20770 Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_25780 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_28140 Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D PACID_28210 gsa; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PACID_28200 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PACID_28170 Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D PACID_28190 Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D PACID_11840 Uroporphyrinogen-III synthase domain-containing protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D PACID_28150 Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D PACID_28160 Protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D PACID_31130 Protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D PACID_28130 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D PACID_27990 Uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D PACID_08940 cobA; Uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PACID_31140 Radical SAM domain-containing protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6]
D PACID_22660 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PACID_11810 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_22650 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_08840 Sirohydrochlorin cobaltochelatase K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D PACID_08810 Precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D PACID_08830 cobJ; Precorrin-3B C(17)-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131]
D PACID_08820 Precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D PACID_13000 Precorrin-6A synthase (Deacetylating) K02228 cobF; precorrin-6A synthase [EC:2.1.1.152]
D PACID_08950 Precorrin-6x reductase CbiJ/CobK K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D PACID_08910 cbiT; Precorrin-6Y C5,15-methyltransferase, CbiT subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D PACID_08860 cobH; Cobalt-precorrin-8x methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D PACID_08930 cobB; Cobyrinic acid A,C-diamide synthase, CbiA K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D PACID_19320 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PACID_08920 cobO; Cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PACID_08800 cobQ; Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D PACID_08790 cobD; Cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D PACID_08970 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D PACID_08980 cobS; Cobalamin synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D PACID_08960 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D PACID_01640 Multicopper oxidase type 3 K22552 mmcO; multicopper oxidase [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pbo00130]
D PACID_26490 ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D PACID_13900 Isochorismate synthetase, enterochelin biosynthesis K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D PACID_26430 Chorismate binding enzyme K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D PACID_13890 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D PACID_13880 O-succinylbenzoate-CoA synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D PACID_03070 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D PACID_13910 O-succinylbenzoic acid-CoA ligase (2-succinylbenzoate--CoA ligase) K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D PACID_13920 menB; Naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D PACID_26530 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D PACID_07480 Male sterility domain-containing protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pbo00900]
D PACID_16340 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PACID_22270 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D PACID_08290 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D PACID_09890 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D PACID_08300 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D PACID_21980 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D PACID_26690 Mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36]
D PACID_26710 Phosphomevalonate kinase K00938 E2.7.4.2; phosphomevalonate kinase [EC:2.7.4.2]
D PACID_26700 Diphosphomevalonate decarboxylase K01597 MVD; diphosphomevalonate decarboxylase [EC:4.1.1.33]
D PACID_26720 Isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D PACID_32210 idi; Isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D PACID_12520 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PACID_10430 Undecaprenyl pyrophosphate synthase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D PACID_04310 1-deoxy-D-xylulose-5-phosphate synthase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PACID_11490 Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:pbo00523]
D PACID_05770 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_26590 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_05760 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PACID_05750 rfbC; dTDP-4-dehydrorhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:pbo01054]
D PACID_23320 racX; Aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D PACID_23450 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D PACID_13900 Isochorismate synthetase, enterochelin biosynthesis K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D PACID_26430 Chorismate binding enzyme K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D PACID_05760 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:pbo00946]
D PACID_31860 Glycoside hydrolase family 3 domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_19970 Putative thermostable beta-glucosidase (Glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_01920 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_18180 Beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D PACID_05790 Alpha-L-rhamnosidase K05989 ramA; alpha-L-rhamnosidase [EC:3.2.1.40]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis [PATH:pbo00311]
D PACID_28550 AXE1 multi-domain protein K01060 cah; cephalosporin-C deacetylase [EC:3.1.1.41]
D PACID_28640 Beta-lactamase related protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D PACID_28620 D-amino-acid amidase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:pbo00332]
D PACID_13350 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PACID_13360 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:pbo00261]
D PACID_01730 cysN; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D PACID_01720 cysD; Bifunctional sulfate adenylyltransferase / ATP-sulfurylase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D PACID_06200 aspartate kinase, monofunctional K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PACID_28040 Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PACID_11740 dapA; Dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PACID_21670 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pbo00521]
D PACID_12410 Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D PACID_19220 pgm; Phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PACID_09380 putative myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PACID_34070 Myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PACID_34140 Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D PACID_05770 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_26590 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_05760 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PACID_05750 rfbC; dTDP-4-dehydrorhamnose reductase/dTDP-4-keto-6-deoxyglucose-3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D PACID_12410 Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:pbo00525]
D PACID_05770 rfbA; Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_26590 Nucleotidyl transferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D PACID_05760 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pbo00401]
D PACID_17490 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D PACID_01090 Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_18090 his8; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PACID_18280 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PACID_14980 [acyl-carrier-protein] S-malonyltransferase family protein K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PACID_22340 Putative oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PACID_00240 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics [PATH:pbo00998]
D PACID_14960 acpP; Acyl carrier protein K02078 acpP; acyl carrier protein
D PACID_03960 Cysteine synthase K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
C 00999 Biosynthesis of various plant secondary metabolites [PATH:pbo00999]
D PACID_17660 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PACID_31860 Glycoside hydrolase family 3 domain-containing protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_19970 Putative thermostable beta-glucosidase (Glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_01920 Beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D PACID_18180 Beta-galactosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
D PACID_03960 Cysteine synthase K21949 sbnA; N-(2-amino-2-carboxyethyl)-L-glutamate synthase [EC:2.5.1.140]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:pbo00362]
D PACID_26880 Hydrolase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24]
D PACID_02190 Sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D PACID_02180 Putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D PACID_02170 OAD_gamma domain-containing protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
C 00627 Aminobenzoate degradation [PATH:pbo00627]
D PACID_06830 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D PACID_02140 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:pbo00625]
D PACID_06750 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation [PATH:pbo00643]
D PACID_06830 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:pbo00626]
D PACID_06750 Zn-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
D PACID_09620 Fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein K05898 kstD; 3-oxosteroid 1-dehydrogenase [EC:1.3.99.4]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pbo03020]
D PACID_25920 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PACID_25910 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PACID_25330 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PACID_17680 Guanylate kinase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D PACID_09130 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pbo03010]
D PACID_13040 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PACID_22070 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PACID_25700 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PACID_25350 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PACID_25520 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PACID_32350 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PACID_25860 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PACID_25550 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PACID_25160 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PACID_25770 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PACID_25360 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PACID_25870 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PACID_25370 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PACID_25560 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14
D PACID_21690 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PACID_21370 Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PACID_25670 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PACID_32330 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PACID_25720 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PACID_13820 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PACID_25950 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PACID_25730 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PACID_25760 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PACID_25750 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PACID_25570 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PACID_25540 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PACID_25930 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PACID_32320 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PACID_25940 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PACID_25960 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PACID_25170 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PACID_25590 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PACID_25500 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PACID_25690 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PACID_25320 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PACID_25530 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PACID_21300 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PACID_10190 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PACID_13310 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PACID_25710 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PACID_25740 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PACID_25580 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PACID_09950 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PACID_13320 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PACID_21620 50S ribosomal protein L28 1 K02902 RP-L28; large subunit ribosomal protein L28
D PACID_27640 50S ribosomal protein L28 1 K02902 RP-L28; large subunit ribosomal protein L28
D PACID_25680 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PACID_25510 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PACID_19670 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PACID_27690 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D PACID_21550 50S ribosomal protein L32 1 K02911 RP-L32; large subunit ribosomal protein L32
D PACID_27670 rpmF multi-domain protein K02911 RP-L32; large subunit ribosomal protein L32
D PACID_27700 50S ribosomal protein L33 2 K02913 RP-L33; large subunit ribosomal protein L33
D PACID_26040 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PACID_10180 rpmI multi-domain protein K02916 RP-L35; large subunit ribosomal protein L35
D PACID_25380 rpmJ multi-domain protein K02919 RP-L36; large subunit ribosomal protein L36
D PACID_10140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_14500 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_10280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_20950 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_10150 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_10290 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_20940 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_14510 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_10160 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_10300 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_20930 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_14520 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pbo00970]
D PACID_13410 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_13420 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_09490 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_04520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_30780 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_19730 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_09390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_23260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_18460 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PACID_18540 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PACID_10080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PACID_27000 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PACID_01850 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PACID_16410 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PACID_20540 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PACID_09920 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PACID_20530 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PACID_26970 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PACID_06820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_10100 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_16420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_22810 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_23280 tRNA-His K14226 tRNA-His; tRNA His
D PACID_00250 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PACID_23790 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_10040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_12970 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_21060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_06350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_26930 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PACID_23740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PACID_23710 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PACID_14860 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_19950 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_19960 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_26050 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_27010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PACID_17430 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PACID_29190 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PACID_23010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PACID_30790 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_06000 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_30870 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_30610 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_28790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PACID_09010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PACID_26060 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PACID_25990 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PACID_26070 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PACID_10090 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_16400 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_16430 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_20400 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_20770 Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_25780 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_31310 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PACID_18990 Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PACID_18980 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PACID_19000 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PACID_25800 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PACID_17800 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PACID_17870 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PACID_18340 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PACID_16520 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PACID_31020 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PACID_08410 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PACID_24440 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PACID_17580 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PACID_22710 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PACID_13770 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PACID_06150 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PACID_05640 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PACID_23030 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PACID_06470 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PACID_21900 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PACID_17920 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PACID_10220 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PACID_10230 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PACID_10270 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PACID_20150 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pbo03060]
D PACID_25440 secY; Preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PACID_25980 secE; Preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PACID_13220 SecG multi-domain protein K03075 secG; preprotein translocase subunit SecG
D PACID_18000 secD; Translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PACID_17990 secF; Export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PACID_18010 yajC; Translocase subunit K03210 yajC; preprotein translocase subunit YajC
D PACID_34310 Membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PACID_20210 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PACID_21390 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PACID_21450 ftsY; Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PACID_04000 Arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D PACID_20730 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA
D PACID_11750 MttA/family protein K03117 tatB; sec-independent protein translocase protein TatB
D PACID_20720 tatC; Twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D PACID_21290 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PACID_12940 Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pbo04122]
D PACID_19090 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PACID_04950 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D PACID_19080 mnmA; tRNA-specific 2-thiouridylase mnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PACID_02770 moaE; Molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D PACID_02750 moaA; Molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D PACID_02760 MoaD domain-containing protein K03636 moaD; sulfur-carrier protein
D PACID_01900 putative molybdopterin synthase sulfurylase MoeB K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D PACID_02790 moaC; Molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D PACID_01880 thiS; Thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome [PATH:pbo03050]
D PACID_17500 prcA; 20S proteasome alpha-type subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D PACID_17510 20S proteasome beta-type subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 03018 RNA degradation [PATH:pbo03018]
D PACID_13300 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PACID_01050 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_10000 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_21680 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PACID_14150 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PACID_19680 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PACID_15270 cnpD; HDIG/KH domain-containing protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D PACID_21630 Zn-dependent hydrolase, RNA-metabolizing, CPSF K12574 rnj; ribonuclease J [EC:3.1.-.-]
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_07090 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PACID_24930 60 kDa chaperonin 2 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_09060 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_27580 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PACID_33620 tRNA adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pbo03030]
D PACID_04220 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_29450 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_12380 GIY-YIG catalytic domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_18120 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PACID_06030 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PACID_28850 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PACID_13810 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PACID_00050 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PACID_05100 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PACID_18510 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PACID_23240 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_32340 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_24450 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PACID_21280 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PACID_13010 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PACID_23100 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pbo03410]
D PACID_29120 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PACID_10360 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PACID_28220 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PACID_05010 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PACID_21530 Formamidopyrimidine-DNA glycosylase/AP lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PACID_23050 Formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D PACID_17640 Formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D PACID_23310 tag; 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PACID_16780 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PACID_26090 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PACID_32420 Apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D PACID_13010 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PACID_23100 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pbo03420]
D PACID_09970 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PACID_25600 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D PACID_13110 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D PACID_13080 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D PACID_13150 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D PACID_03290 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_20040 HRDC domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_20080 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_24730 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_13010 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PACID_23100 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PACID_09130 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:pbo03430]
D PACID_03290 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_20040 HRDC domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_20080 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_24730 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_10480 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PACID_10470 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PACID_23240 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_32340 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_18120 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PACID_00050 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PACID_06030 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PACID_13810 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PACID_28850 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PACID_04220 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_29450 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_12380 GIY-YIG catalytic domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_23100 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pbo03440]
D PACID_23240 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_32340 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_00070 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D PACID_14460 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D PACID_06050 recR; Recombination protein recR K06187 recR; recombination protein RecR
D PACID_15250 recA; Protein RecA K03553 recA; recombination protein RecA
D PACID_13010 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PACID_18030 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
D PACID_18020 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PACID_18040 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PACID_21610 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PACID_20060 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PACID_20050 Putative exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PACID_20070 Exonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PACID_18120 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PACID_00050 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PACID_06030 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PACID_13810 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PACID_28850 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PACID_04220 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_29450 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_12380 GIY-YIG catalytic domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_17590 Primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
D PACID_29610 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:pbo03250]
D PACID_12350 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pbo02010]
D PACID_12570 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PACID_12580 Binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D PACID_12590 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PACID_19030 putative ABC transporter, substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D PACID_19040 putative ABC transporter permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D PACID_19050 ABC transporter ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D PACID_02570 modA; Molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D PACID_02560 Sulfate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PACID_28260 ABC transporter, periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D PACID_28250 Binding-protein-dependent transport systems inner membrane component K02063 thiP; thiamine transport system permease protein
D PACID_28240 ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D PACID_06440 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_07640 ABC transporter, substrate-binding protein, QAT family K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_03610 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_07650 ABC transporter, substrate-binding protein, QAT family K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_07630 ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D PACID_07620 proV; Glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D PACID_30520 Glycine betaine/choline-binding protein of an ABC-type transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D PACID_07690 Glycine betaine-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D PACID_30500 Proline/glycine betaine ABC transporter, permease protein K05846 opuBD; osmoprotectant transport system permease protein
D PACID_30510 Proline/glycine betaine ABC transporter, permease protein K05846 opuBD; osmoprotectant transport system permease protein
D PACID_07700 Putative ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D PACID_07720 Osmoprotectant ABC transporter, permease protein K05846 opuBD; osmoprotectant transport system permease protein
D PACID_30490 Putative ABC transporter ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PACID_07710 Glycine betaine/carnitin ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PACID_08530 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PACID_22540 Bacterial extracellular solute-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D PACID_22560 ABC transporter, permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D PACID_22570 Maltose transport system permease protein MalG K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D PACID_07390 Sugar ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D PACID_06910 Sugar ABC superfamily ATP binding cassette transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D PACID_31980 ABC-type sugar transport system, periplasmic component K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D PACID_07380 Binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D PACID_31990 ABC-type sugar transport systems, permease component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D PACID_06920 Sugar ABC superfamily ATP binding cassette transporter, membrane protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D PACID_07370 Carbohydrate ABC transporter membrane protein 2, CUT1 family K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D PACID_32000 ABC-type sugar transport system, permease component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D PACID_06930 Sugar ABC superfamily ATP binding cassette transporter, membrane protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D PACID_31760 Extracellular solute-binding protein family 1 K10236 thuE; trehalose/maltose transport system substrate-binding protein
D PACID_31770 Extracellular solute-binding protein family 1 K10236 thuE; trehalose/maltose transport system substrate-binding protein
D PACID_31750 Binding-protein-dependent transport systems inner membrane component K10237 thuF; trehalose/maltose transport system permease protein
D PACID_31740 Binding-protein-dependent transport systems inner membrane component K10238 thuG; trehalose/maltose transport system permease protein
D PACID_01110 Sugar ABC transporter substrate-binding protein K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein
D PACID_01120 Putative ABC-type sugar transport system, permease component K10201 ngcF; N-acetylglucosamine transport system permease protein
D PACID_01130 Binding-protein-dependent transport systems inner membrane component K10202 ngcG; N-acetylglucosamine transport system permease protein
D PACID_18150 Carbohydrate ABC transporter substrate-binding protein, CUT1 family K10240 cebE; cellobiose transport system substrate-binding protein
D PACID_18160 Carbohydrate ABC transporter membrane protein K10241 cebF; cellobiose transport system permease protein
D PACID_18170 Binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D PACID_24500 Basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D PACID_24480 Amino acid or sugar ABC transport system, permease protein K23535 nupB; general nucleoside transport system permease protein
D PACID_24470 Amino acid or sugar ABC transport system, permease protein K23536 nupC; general nucleoside transport system permease protein
D PACID_24490 ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D PACID_27090 Bacterial extracellular solute-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D PACID_27080 ABC transporter, permease protein K17316 gtsB; glucose/mannose transport system permease protein
D PACID_27070 ABC transporter, permease protein K17317 gtsC; glucose/mannose transport system permease protein
D PACID_00170 ribose ABC transport system protein K10439 rbsB; ribose transport system substrate-binding protein
D PACID_00160 ribose ABC transport system protein K10440 rbsC; ribose transport system permease protein
D PACID_00150 ABC transporter protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D PACID_00190 D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D PACID_26220 ABC-type sugar transport system periplasmic component K23508 ytfQ; galactofuranose transport system substrate-binding protein
D PACID_02900 Sugar ABC transporter, solute-binding protein K23508 ytfQ; galactofuranose transport system substrate-binding protein
D PACID_26190 Monosaccharide ABC transporter membrane protein K23509 ytfT; galactofuranose transport system permease protein
D PACID_02880 ABC transporter permease K23509 ytfT; galactofuranose transport system permease protein
D PACID_02870 rbsC; permease component of ABC-type sugar transport system K23509 ytfT; galactofuranose transport system permease protein
D PACID_26200 Putative sugar ABC transporter, permease component K23509 ytfT; galactofuranose transport system permease protein
D PACID_02890 ABC transporter related protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D PACID_26210 ATP binding protein of ABC transporter, ATPase component K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D PACID_07350 Extracellular solute-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D PACID_31890 Extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D PACID_07330 Binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D PACID_31910 Binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D PACID_07340 Binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D PACID_31900 ABC-type sugar transport system, permease component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D PACID_27600 pstS; Phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PACID_27610 pstC; Phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D PACID_27620 Phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D PACID_27630 pstB; Phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PACID_01070 Amino acid ABC transporter, amino acid-binding/permease protein K10036 glnH; glutamine transport system substrate-binding protein
D PACID_01080 Polar amino acid ABC transporter, ATP-binding subunit K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D PACID_04820 Glutamate ABC transporter glutamate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D PACID_14390 Amino acid-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D PACID_04810 Glutamate ABC transporter permease protein K10006 gluC; glutamate transport system permease protein
D PACID_14400 Amino acid ABC transporter membrane protein K10006 gluC; glutamate transport system permease protein
D PACID_04800 Glutamine ABC superfamily ATP binding cassette transporter, permease protein K10007 gluD; glutamate transport system permease protein
D PACID_14410 Amino acid ABC transporter membrane protein K10007 gluD; glutamate transport system permease protein
D PACID_04830 Glutamate uptake system ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D PACID_27020 livK; Putative branched-chain amino acid ABC transporter, substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PACID_27060 Branched-chain amino acid ABC transporter,permease protein K01997 livH; branched-chain amino acid transport system permease protein
D PACID_27050 livM; Putative branched-chain amino acid ABC transporter, permease component K01998 livM; branched-chain amino acid transport system permease protein
D PACID_27040 Putatice branched-chain amino acid ABC transporter, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PACID_27030 livF; Putative branched-chain amino acid ABC transporter, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PACID_24760 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D PACID_24780 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D PACID_24770 Methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D PACID_29300 Bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D PACID_29310 ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D PACID_29320 ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D PACID_29330 Oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D PACID_29340 ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D PACID_02280 extracellular solute-binding protein family 5 protein K13889 gsiB; glutathione transport system substrate-binding protein
D PACID_25460 Bacterial extracellular solute-binding protein, family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D PACID_25490 ABC transporter, permease protein K13890 gsiC; glutathione transport system permease protein
D PACID_02310 ABC transporter K13890 gsiC; glutathione transport system permease protein
D PACID_02300 oppC; Putative oligopeptide ABC transporter, permease protein OppC K13891 gsiD; glutathione transport system permease protein
D PACID_25480 ABC transporter, permease protein K13891 gsiD; glutathione transport system permease protein
D PACID_25470 Oligopeptide/dipeptide ABC superfamily ATP binding cassette transporter K13892 gsiA; glutathione transport system ATP-binding protein
D PACID_27790 Periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D PACID_27800 Transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D PACID_27810 iron ABC transporter K23187 fepG; iron-siderophore transport system permease protein
D PACID_27820 ABC transporter related protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D PACID_08880 Cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D PACID_08870 cbiM; Cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D PACID_08890 cbiQ; Cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D PACID_08900 Cobalt ABC transporter, ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D PACID_20900 BioY multi-domain protein K03523 bioY; biotin transport system substrate-specific component
D PACID_20880 Cobalt transport protein K16783 bioN; biotin transport system permease protein
D PACID_20890 ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D PACID_25250 ABC transporter-associated permease K16785 ecfT; energy-coupling factor transport system permease protein
D PACID_12660 ABC-2 type transporter K09694 nodJ; lipooligosaccharide transport system permease protein
D PACID_12670 ABC-2 type transporter K09694 nodJ; lipooligosaccharide transport system permease protein
D PACID_12680 ABC transporter related protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D PACID_23540 ABC-type antimicrobial peptide transport system, permease component K09813 hrtB; hemin transport system permease protein
D PACID_23550 Putative ABC transport ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D PACID_20370 Efflux ABC transporter, permease protein K09811 ftsX; cell division transport system permease protein
D PACID_20380 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PACID_05450 ABC transporter, ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D PACID_05440 msbA; Lipid A export ATP-binding/permease protein MsbA K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D PACID_05260 cydC; Thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D PACID_05270 cydD; Thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:pbo02060]
D PACID_08020 ptsP; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PACID_04760 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PACID_08030 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PACID_21790 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PACID_19180 Phosphotransferase system, EIIB K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D PACID_14130 PTS system, mannitol-specific IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D PACID_21780 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D PACID_08200 PTS system glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D PACID_08190 PTS family glucitol (Glu) porter component IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D PACID_21770 PTS system, glucitol/sorbitol-specific IIB component and second of two IIC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D PACID_21760 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D PACID_08180 PTS system, glucitol/sorbitol-specific enzyme II, C2 component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D PACID_08110 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D PACID_00930 Phosphoenolpyruvate-dependent sugar phosphotransferase system K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D PACID_08140 PTS system, Lactose/Cellobiose specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D PACID_00910 PTS system, Lactose/Cellobiose specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D PACID_08130 PTS system Galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D PACID_00920 PTS system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D PACID_04770 Phosphotransferase system K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
C 03070 Bacterial secretion system [PATH:pbo03070]
D PACID_18000 secD; Translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PACID_17990 secF; Export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PACID_25980 secE; Preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PACID_13220 SecG multi-domain protein K03075 secG; preprotein translocase subunit SecG
D PACID_25440 secY; Preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PACID_18010 yajC; Translocase subunit K03210 yajC; preprotein translocase subunit YajC
D PACID_34310 Membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PACID_20210 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PACID_21450 ftsY; Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PACID_21390 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PACID_20730 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA
D PACID_11750 MttA/family protein K03117 tatB; sec-independent protein translocase protein TatB
D PACID_20720 tatC; Twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pbo02020]
D PACID_08060 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D PACID_08070 phoB; Phosphate regulon transcriptional regulatory protein PhoB, Sensory transduction protein regX3 K07776 regX3; two-component system, OmpR family, response regulator RegX3
D PACID_27600 pstS; Phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PACID_29820 Osmosensitive K+ channel histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PACID_29830 DNA-binding response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PACID_11810 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_22650 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_32190 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D PACID_32180 Transcriptional regulatory protein, C-terminal domain-containing protein K07669 mprA; two-component system, OmpR family, response regulator MprA
D PACID_33760 Trypsin K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D PACID_20260 Signal transduction histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D PACID_20270 Two component transcriptional regulator, winged helix family K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D PACID_00010 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PACID_26230 HpcH/HpaI aldolase/citrate lyase family protein K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D PACID_02100 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D PACID_00380 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D PACID_02700 narG; Nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D PACID_02710 narH; Nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D PACID_02730 Respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D PACID_02720 narJ; Nitrate reductase molybdenum cofactor assembly chaperone K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D PACID_08710 Histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D PACID_01360 Response regulator receiver domain-containing protein, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D PACID_08720 Response regulator receiver domain-containing protein K07693 desR; two-component system, NarL family, response regulator DesR
D PACID_29060 Helicase/secretion neighborhood ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PACID_01250 Type II/IV secretion system protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PACID_29050 TadB domain-containing protein K12510 tadB; tight adherence protein B
D PACID_01270 Type II secretion system F domain-containing protein K12511 tadC; tight adherence protein C
D PACID_28600 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D PACID_11930 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_12010 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_29130 Transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PACID_05290 Cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D PACID_05280 cydB; Cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D PACID_32070 Low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D PACID_04880 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pbo02024]
D PACID_09020 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D PACID_18280 trpE; Anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PACID_12460 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PACID_29830 DNA-binding response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PACID_18390 Glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D PACID_05340 Tat (Twin-arginine translocation) pathway signal sequence K20265 gadC; glutamate:GABA antiporter
D PACID_26520 Antibiotic biosynthesis monooxygenase K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D PACID_14720 Putative integral membrane protein K07344 trbL; type IV secretion system protein TrbL
D PACID_27020 livK; Putative branched-chain amino acid ABC transporter, substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PACID_27060 Branched-chain amino acid ABC transporter,permease protein K01997 livH; branched-chain amino acid transport system permease protein
D PACID_27050 livM; Putative branched-chain amino acid ABC transporter, permease component K01998 livM; branched-chain amino acid transport system permease protein
D PACID_27040 Putatice branched-chain amino acid ABC transporter, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PACID_27030 livF; Putative branched-chain amino acid ABC transporter, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PACID_23190 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_23200 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_32400 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_19490 Putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_29130 Transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PACID_24670 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PACID_29300 Bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D PACID_29310 ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D PACID_29320 ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D PACID_29330 Oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D PACID_29340 ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D PACID_02520 Extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_19930 Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_28700 Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_06700 Extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_02550 Binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_19920 ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_28690 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_06710 dppB; ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_02540 Binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_19910 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_28680 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_06720 Binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_02530 Putative dipeptide/oligopeptide transport protein (ABC superfamily, atp_bind) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PACID_28670 Putative phosphonate C-P lyase system protein PhnK K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PACID_06730 Putative oligopeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PACID_34310 Membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PACID_25980 secE; Preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PACID_13220 SecG multi-domain protein K03075 secG; preprotein translocase subunit SecG
D PACID_25440 secY; Preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PACID_18010 yajC; Translocase subunit K03210 yajC; preprotein translocase subunit YajC
D PACID_20210 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PACID_21450 ftsY; Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PACID_21390 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D PACID_00170 ribose ABC transport system protein K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly
D PACID_29420 RNA polymerase, sigma 32 subunit, RpoH K03086 rpoD; RNA polymerase primary sigma factor
D PACID_16080 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D PACID_01050 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_10000 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:pbo04980]
D PACID_19320 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PACID_11220 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-]
D PACID_27210 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-]
D PACID_11200 mutA; Methylmalonyl-CoA mutase, small subunit K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_11210 Methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D PACID_17540 metH; Methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-methyltransferase) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pbo01501]
D PACID_13280 Beta-N-acetylglucosaminidase (Putative secreted protein) K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D PACID_29300 Bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D PACID_29310 ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D PACID_29320 ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D PACID_29330 Oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D PACID_29340 ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D PACID_28640 Beta-lactamase related protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D PACID_28620 D-amino-acid amidase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D PACID_12790 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pbo01502]
D PACID_20480 D-alanine--D-alanine ligase 1 K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_34210 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_31080 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PACID_12810 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PACID_12820 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PACID_12850 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance
D PACID_12350 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pbo01000]
C 01001 Protein kinases [BR:pbo01001]
D PACID_12490 Kinase domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PACID_05680 Kinase domain-containing protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PACID_33110 Serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PACID_09830 Putative serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D PACID_17110 HipA N-terminal domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PACID_07890 Capsular exopolysaccharide biosynthesis protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D PACID_08060 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D PACID_29820 Osmosensitive K+ channel histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PACID_32190 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D PACID_20260 Signal transduction histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D PACID_01570 Sensor protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PACID_07050 Two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PACID_08710 Histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D PACID_19800 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pbo01009]
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_05710 Protein phosphatase 2C K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D PACID_20110 Protein phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D PACID_06970 Phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:pbo01002]
D PACID_12940 Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PACID_12320 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PACID_33490 Aminopeptidase C K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D PACID_25010 Peptidase C1-like family protein K01372 BLMH; bleomycin hydrolase [EC:3.4.22.40]
D PACID_25290 Glutamine amidotransferase class-I K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_24860 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_23750 Putative glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_03380 Glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PACID_06320 N-acetylmuramoyl-L-alanine amidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_02920 N-acetylmuramoyl-L-alanine amidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_12400 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_14780 Lytic Transglycosylase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_27130 purF; Amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PACID_18210 Glutamate synthase [NADPH], large chain K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D PACID_25100 glmS; Glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PACID_19460 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PACID_19520 Asparagine synthase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D PACID_09700 intracellular protease, PfpI family protein K05520 yhbO; deglycase [EC:3.5.1.124]
D PACID_07780 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D PACID_02960 Dipeptidase K08659 pepDA; dipeptidase [EC:3.4.-.-]
D PACID_20550 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D PACID_09100 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D PACID_28050 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D PACID_23120 Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PACID_27250 Membrane alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PACID_26170 Peptidase family M13 K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D PACID_04530 Peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D PACID_04540 Peptidase, M16 (Pitrilysin) family K07263 pqqL; zinc protease [EC:3.4.24.-]
D PACID_28720 Renal dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PACID_03100 Putative peptidase M20 family protein K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D PACID_11650 dapE; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D PACID_05570 Amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9]
D PACID_25420 Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PACID_11910 Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PACID_11820 Peptidase, M24 family K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PACID_28490 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PACID_23250 Membrane protein-like protein K24131 prsW; protease PrsW [EC:3.4.-.-]
D PACID_33760 Trypsin K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D PACID_14070 hypothetical protein K18546 sprC; streptogrisin C [EC:3.4.21.-]
D PACID_11580 Beta-lactamase K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D PACID_28520 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PACID_22770 ATP-dependent Clp protease proteolytic subunit 1 K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PACID_22780 ATP-dependent Clp protease proteolytic subunit 2 K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PACID_20000 Lon protease (S16) C-terminal proteolytic domain-containing protein K07177 K07177; Lon-like protease
D PACID_21290 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PACID_14260 pip; Proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D PACID_22740 WD40-like protein K08676 tri; tricorn protease [EC:3.4.21.-]
D PACID_24160 Peptidase family S51 K05995 pepE; dipeptidase E [EC:3.4.13.21]
D PACID_28660 putative carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PACID_15460 PhiRv1 phage protein K06904 GP4; Escherichia/Staphylococcus phage prohead protease
D PACID_17500 prcA; 20S proteasome alpha-type subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D PACID_17510 20S proteasome beta-type subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
C 01003 Glycosyltransferases [BR:pbo01003]
D PACID_16950 Glycosyltransferase, group 2 family protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D PACID_09850 Dolichyl-phosphate-mannose-protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D PACID_16560 pimA; Phosphatidylinositol alpha-mannosyltransferase (Glycosyltransferase) K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D PACID_25310 Glycosyltransferase, group 1 family protein K14335 pimC; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D PACID_25070 Glycosyltransferase, group 1 family protein K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D PACID_01970 Glycosyl transferase group 1 K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D PACID_11690 Glycogen synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D PACID_19630 Glycosyltransferase, group 4 family K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D PACID_07860 Putative glycosyl transferase K13658 gumI; beta-1,4-mannosyltransferase [EC:2.4.1.251]
D PACID_24110 Succinoglycan biosynthesis protein ExoA K16557 exoA; succinoglycan biosynthesis protein ExoA [EC:2.4.-.-]
D PACID_07830 putative glycosyltransferase K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289]
D PACID_16460 Glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D PACID_26850 Glycosyl transferase, family 28 K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D PACID_18560 Alpha,alpha-trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D PACID_04640 Glycosyltransferase, group 1 family K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
D PACID_04650 Glycosyltransferase, group 1 family K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
D PACID_04690 Glycosyl transferases group 1-like protein K16703 wcaL; colanic acid/amylovoran/stewartan biosynthesis glycosyltransferase WcaL/AmsK/CpsK [EC:2.4.-.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pbo01005]
D PACID_30170 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D PACID_04610 Dolichol-phosphate mannosyltransferase K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D PACID_19630 Glycosyltransferase, group 4 family K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pbo01011]
D PACID_16910 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PACID_26010 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PACID_12860 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PACID_12830 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PACID_12800 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PACID_20480 D-alanine--D-alanine ligase 1 K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_34210 D-alanine--D-alanine ligase B K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PACID_31080 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PACID_23860 Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PACID_28660 putative carboxypeptidase K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PACID_12820 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PACID_12850 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PACID_30070 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PACID_32290 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PACID_06210 mviN; Integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D PACID_12790 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PACID_05690 Penicillin-binding protein, transpeptidase domain-containing protein K05364 pbpA; penicillin-binding protein A
D PACID_28520 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PACID_11580 Beta-lactamase K21469 pbp4b; serine-type D-Ala-D-Ala carboxypeptidase [EC:3.4.16.4]
D PACID_06320 N-acetylmuramoyl-L-alanine amidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_02920 N-acetylmuramoyl-L-alanine amidase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_12400 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_14780 Lytic Transglycosylase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D PACID_07780 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D PACID_17780 Aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D PACID_30370 Lipoprotein A-like double-psi beta-barrel K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PACID_01860 Lipoprotein A-like protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D PACID_33260 Bacterial SH3 domain-containing protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:pbo01004]
D PACID_14980 [acyl-carrier-protein] S-malonyltransferase family protein K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PACID_14970 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PACID_14950 3-oxoacyl-[acyl-carrier-protein] synthase 1 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PACID_09650 3-oxoacyl-(Acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PACID_22340 Putative oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PACID_00240 Short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PACID_30310 Acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D PACID_22300 Enoyl-[acyl-carrier-protein] reductase (NADH) K11611 inhA; meromycolic acid enoyl-[acyl-carrier-protein] reductase [EC:1.3.1.118]
D PACID_13940 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_13950 Acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PACID_23190 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_23200 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_32400 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_19490 Putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_32440 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_12420 Acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PACID_12430 Phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:pbo01008]
D PACID_23320 racX; Aspartate/glutamate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D PACID_23450 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:pbo01006]
D PACID_12520 Polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PACID_10430 Undecaprenyl pyrophosphate synthase K12503 E2.5.1.68; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D PACID_15940 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PACID_26530 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D PACID_22660 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:pbo01007]
D PACID_20770 Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_25780 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_25800 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PACID_10270 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PACID_20150 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PACID_08410 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PACID_06470 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PACID_24440 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PACID_06150 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PACID_22710 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PACID_13770 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PACID_05640 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PACID_23030 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PACID_17870 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PACID_17920 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PACID_18340 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PACID_31020 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PACID_21900 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PACID_16520 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PACID_17800 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PACID_10220 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PACID_10230 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PACID_32510 Aminotransferase class I and II K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D PACID_01090 Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_18090 his8; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PACID_08660 kbl; Glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D PACID_30430 Aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D PACID_17250 Ornithine aminotransferase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D PACID_24360 Acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PACID_20320 Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PACID_11850 gabT; 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D PACID_31250 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D PACID_28210 gsa; Glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PACID_20590 ilvE; Branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PACID_09240 Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D PACID_05580 Aminotransferase class V K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
C 00199 Cytochrome P450 [BR:pbo00199]
D PACID_29620 Putative fatty acid beta hydroxylase K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4]
C 00194 Photosynthesis proteins [BR:pbo00194]
D PACID_19340 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PACID_19350 atpB; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PACID_19360 ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PACID_19370 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PACID_19380 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PACID_19390 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PACID_19400 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PACID_19410 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pbo03000]
D PACID_00950 Modification methylase NaeI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PACID_13610 Transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D PACID_27310 LysR substrate binding domain-containing protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PACID_18640 Transcriptional regulator, ArgP, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PACID_06260 LysR family transcriptional regulator K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D PACID_15230 Transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D PACID_04790 DeoR-like helix-turn-helix protein K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D PACID_03130 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_03700 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_21140 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_30240 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_06610 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_06690 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_32160 LacI-type transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_07290 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_32930 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_00140 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_34120 Transcription regulator protein (Transcriptional regulator, LacI family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_03000 Transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PACID_21180 Transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D PACID_22600 MalR repressor protein K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D PACID_34170 Transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D PACID_05200 FCD domain-containing protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PACID_18600 pdxR; Transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PACID_10250 Transcriptional regulator, TetR family K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D PACID_09720 Transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PACID_13980 Transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D PACID_16970 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PACID_28650 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PACID_05050 Transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PACID_07120 Transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D PACID_18320 Transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PACID_29730 Fur family transcriptional regulator K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D PACID_30010 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D PACID_29130 Transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PACID_02390 cAMP-binding protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PACID_04010 Toxin-antitoxin system, antitoxin component, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PACID_18870 Transcriptional regulator, ArsR family K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D PACID_15220 DNA-binding protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D PACID_00230 Transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D PACID_11320 Transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D PACID_09260 Iron dependent repressor, N-terminal DNA binding domain-containing protein K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D PACID_02070 sirR; Transcriptional repressor SirR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D PACID_24170 Biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PACID_17100 HTH_3 multi-domain protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D PACID_28010 Redox-sensing transcriptional repressor rex K01926 rex; redox-sensing transcriptional repressor
D PACID_11380 Proline dehydrogenase/aldehyde dehydrogenase (NAD) family protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D PACID_02440 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D PACID_00890 phosphoenolpyruvate-dependent sugar phosphotransferase system K03491 licR; probable licABCH operon transcriptional regulator
D PACID_21740 PRD domain-containing protein K03491 licR; probable licABCH operon transcriptional regulator
D PACID_24060 WhiB-Stv K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D PACID_29160 hypothetical protein K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D PACID_19790 Transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D PACID_05110 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D PACID_34250 ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PACID_08100 CarD-like protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D PACID_10260 Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D PACID_14090 hrcA; Heat-inducible transcription repressor hrcA K03705 hrcA; heat-inducible transcriptional repressor
D PACID_24850 PspC domain-containing protein K03973 pspC; phage shock protein C
D PACID_08170 Transcriptional regulator, sugar-binding family K05346 deoR; deoxyribonucleoside regulator
D PACID_33740 Transcriptional regulator, sugar-binding family K05346 deoR; deoxyribonucleoside regulator
D PACID_30270 Transcriptional regulator, sugar-binding family protein K05346 deoR; deoxyribonucleoside regulator
D PACID_15060 Bifunctional protein pyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PACID_20280 hypothetical protein K07735 algH; putative transcriptional regulator
D PACID_12930 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D PACID_17120 spore_yteA multi-domain protein K06204 dksA; RNA polymerase-binding transcription factor
D PACID_16000 Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D PACID_12760 mraZ; Protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:pbo03021]
D PACID_09130 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D PACID_25330 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PACID_25920 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PACID_25910 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PACID_17680 Guanylate kinase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PACID_29420 RNA polymerase, sigma 32 subunit, RpoH K03086 rpoD; RNA polymerase primary sigma factor
D PACID_16080 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D PACID_19830 RNA polymerase sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PACID_33690 RNA polymerase, sigma subunit, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D PACID_21850 nusA; Transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PACID_17710 nusB; Transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D PACID_25970 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D PACID_12930 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D PACID_17120 spore_yteA multi-domain protein K06204 dksA; RNA polymerase-binding transcription factor
D PACID_10390 greA; Transcription elongation factor greA K03624 greA; transcription elongation factor GreA
D PACID_19680 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:pbo03019]
D PACID_13300 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PACID_21540 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PACID_21630 Zn-dependent hydrolase, RNA-metabolizing, CPSF K12574 rnj; ribonuclease J [EC:3.1.-.-]
D PACID_15270 cnpD; HDIG/KH domain-containing protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D PACID_23270 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PACID_14150 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PACID_01050 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_10000 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_21680 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PACID_19680 rho; Transcription termination factor Rho K03628 rho; transcription termination factor Rho
D PACID_33140 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D PACID_07090 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PACID_24930 60 kDa chaperonin 2 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_09060 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_27580 ppk; Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PACID_33620 tRNA adenylyltransferase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D PACID_13160 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D PACID_20700 Superfamily II RNA helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D PACID_16060 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D PACID_04980 ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:pbo03011]
D PACID_13040 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D PACID_22070 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PACID_25700 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PACID_25350 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PACID_25520 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PACID_32350 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PACID_25860 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PACID_25550 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PACID_25160 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PACID_25770 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PACID_25360 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PACID_25870 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PACID_25370 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PACID_25560 30S ribosomal protein S14 type Z K02954 RP-S14; small subunit ribosomal protein S14
D PACID_21690 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PACID_21370 Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PACID_25670 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PACID_32330 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PACID_25720 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PACID_13820 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PACID_25950 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PACID_25730 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PACID_25760 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PACID_25750 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PACID_25570 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PACID_25540 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PACID_32320 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PACID_25940 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PACID_25960 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PACID_25930 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PACID_25170 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PACID_25590 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PACID_25500 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PACID_25690 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PACID_25320 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PACID_25530 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PACID_21300 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PACID_10190 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PACID_13310 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PACID_25710 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PACID_25740 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PACID_25580 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PACID_13320 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PACID_21620 50S ribosomal protein L28 1 K02902 RP-L28; large subunit ribosomal protein L28
D PACID_27640 50S ribosomal protein L28 1 K02902 RP-L28; large subunit ribosomal protein L28
D PACID_25680 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PACID_25510 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D PACID_19670 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PACID_27690 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D PACID_21550 50S ribosomal protein L32 1 K02911 RP-L32; large subunit ribosomal protein L32
D PACID_27670 rpmF multi-domain protein K02911 RP-L32; large subunit ribosomal protein L32
D PACID_27700 50S ribosomal protein L33 2 K02913 RP-L33; large subunit ribosomal protein L33
D PACID_26040 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PACID_10180 rpmI multi-domain protein K02916 RP-L35; large subunit ribosomal protein L35
D PACID_25380 rpmJ multi-domain protein K02919 RP-L36; large subunit ribosomal protein L36
D PACID_09950 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D PACID_10160 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_10300 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_20930 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_14520 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_10140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_14500 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_10280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_20950 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_10150 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_10290 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_20940 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_14510 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pbo03009]
D PACID_21540 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PACID_23270 Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D PACID_14350 era; GTP-binding protein Era K03595 era; GTPase
D PACID_13340 cgtA; GTPase obg K03979 obgE; GTPase [EC:3.6.5.-]
D PACID_12930 C4-type zinc finger protein, DksA/TraR family K06204 dksA; RNA polymerase-binding transcription factor
D PACID_17120 spore_yteA multi-domain protein K06204 dksA; RNA polymerase-binding transcription factor
D PACID_21850 nusA; Transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D PACID_17710 nusB; Transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D PACID_25970 Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D PACID_09880 Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PACID_17570 tRNA/rRNA cytosine-C5-methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PACID_06980 Methyltransferase small domain-containing protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PACID_25230 Methyltransferase small domain-containing protein K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PACID_21580 RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PACID_14110 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PACID_34280 gidB; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PACID_12770 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PACID_09860 Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PACID_20870 Ribosomal RNA large subunit methyltransferase J K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D PACID_22350 Methyltransferase domain-containing protein K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PACID_08400 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PACID_22020 rlmN; Ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PACID_33880 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PACID_20790 Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PACID_12950 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PACID_32300 23S ribosomal RNA methyltransferase ErmML K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
D PACID_25030 rimI; Ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PACID_09470 Acetyltransferase, GNAT family K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D PACID_21350 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D PACID_15190 Ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D PACID_13300 Ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D PACID_17790 Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PACID_19860 rsgA; Ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PACID_17470 engA; GTP-binding protein engA K03977 engA; GTPase
D PACID_15960 GTP-binding protein HflX K03665 hflX; GTPase
D PACID_19640 SUA5 related protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PACID_17960 GTP Pyrophosphokinase, (P)ppGpp synthetase I K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PACID_21810 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D PACID_21860 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP
D PACID_11230 S4 domain-containing protein K14761 rlbA; ribosome-associated protein
D PACID_13390 Iojap-like protein K09710 ybeB; ribosome-associated protein
D PACID_14330 metalloprotein, YbeY family K07042 ybeY; probable rRNA maturation factor
D PACID_10540 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D PACID_21560 Metal-binding protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:pbo03016]
D PACID_01500 RtcB-like protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PACID_20770 Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_25780 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_21900 Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PACID_06150 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PACID_13770 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PACID_24440 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PACID_25800 glnS; Glutamine--tRNA ligase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PACID_06470 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PACID_05640 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PACID_23030 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PACID_17870 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PACID_17800 Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PACID_18340 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PACID_16520 Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PACID_31020 Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PACID_08410 Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PACID_22710 Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PACID_17920 Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PACID_10220 Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PACID_10230 Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PACID_10270 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PACID_20150 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PACID_27510 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PACID_20680 Histidine triad domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PACID_17530 tRNA methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D PACID_25210 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PACID_25220 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PACID_21730 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PACID_19090 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PACID_19640 SUA5 related protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PACID_15940 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PACID_34330 rnpA multi-domain protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PACID_23850 rph; tRNA nucleotidyltransferase K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PACID_16350 3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5]
D PACID_05020 2_5_ligase multi-domain protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D PACID_21600 YbaK multi-domain protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D PACID_32890 ybaK; YbaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D PACID_30630 Cytidine and deoxycytidylate deaminase zinc-binding region K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PACID_15290 miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase miaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D PACID_21340 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PACID_10200 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family
D PACID_33880 Pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PACID_19080 mnmA; tRNA-specific 2-thiouridylase mnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PACID_27480 ygfZ; Folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D PACID_14180 Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PACID_28510 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PACID_25040 yeaZ; Universal bacterial protein YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PACID_25020 gcp; putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PACID_25050 ATPase, YjeE family K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PACID_21680 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:pbo03012]
D PACID_21830 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PACID_10170 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PACID_22060 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D PACID_25830 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D PACID_25850 fusA; Elongation factor G K02355 fusA; elongation factor G
D PACID_19660 prfA; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D PACID_22040 frr; Ribosome-recycling factor K02838 frr; ribosome recycling factor
D PACID_19650 prmC; Protein-(Glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PACID_09960 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PACID_25390 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PACID_17720 efp; Elongation factor P K02356 efp; elongation factor P
D PACID_20390 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D PACID_16790 Peptide chain release factor class I K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:pbo03110]
D PACID_07360 ATP-dependent chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PACID_28400 clpC; Negative regulator of genetic competence ClpC/MecB K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D PACID_22760 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PACID_07090 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PACID_16760 DnaK family protein K04044 hscA; molecular chaperone HscA
D PACID_24930 60 kDa chaperonin 2 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_09060 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_14100 Chaperone protein DnaJ 1 K03686 dnaJ; molecular chaperone DnaJ
D PACID_07110 dnaJ; Chaperone protein DnaJ 2 K03686 dnaJ; molecular chaperone DnaJ
D PACID_07100 grpE; Protein grpE K03687 GRPE; molecular chaperone GrpE
D PACID_12610 Hsp20/alpha crystallin family protein K13993 HSP20; HSP20 family protein
D PACID_07440 Heat shock protein 20 2 (20 kDa chaperone 2) K13993 HSP20; HSP20 family protein
D PACID_06010 S4 domain-containing protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D PACID_24940 10 kDa chaperonin K04078 groES; chaperonin GroES
D PACID_23760 10 kDa chaperonin K04078 groES; chaperonin GroES
D PACID_28490 ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PACID_19410 ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PACID_33320 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D PACID_12350 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PACID_19310 Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D PACID_33890 Thioredoxin K03671 TXN; thioredoxin
D PACID_05080 trxA; thioredoxin K03671 TXN; thioredoxin
D PACID_09280 Thioredoxin K03671 TXN; thioredoxin
D PACID_19210 Thioredoxin K05838 ybbN; putative thioredoxin
D PACID_29110 Antioxidant, AhpC/TSA family K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:pbo04131]
D PACID_13260 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PACID_20610 Putative secreted protein K07192 FLOT; flotillin
D PACID_06780 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PACID_04000 Arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D PACID_31150 Glycosyl hydrolase family 38 N-terminal domain-containing protein K01191 MAN2C1; alpha-mannosidase [EC:3.2.1.24]
D PACID_07280 Fructose-1,6-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_13190 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PACID_09730 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PACID_08040 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_13140 Phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_12960 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PACID_16120 Transporter, major facilitator family protein K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system [BR:pbo04121]
C 03051 Proteasome [BR:pbo03051]
D PACID_17500 prcA; 20S proteasome alpha-type subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1]
D PACID_17510 20S proteasome beta-type subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1]
D PACID_20760 Transcriptional regulator, DeoR family K13572 pafB; proteasome accessory factor B
D PACID_20750 Regulatory protein K13573 pafC; proteasome accessory factor C
C 03032 DNA replication proteins [BR:pbo03032]
D PACID_24450 Ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PACID_00950 Modification methylase NaeI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PACID_23930 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D PACID_00010 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PACID_05100 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PACID_18510 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D PACID_23240 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_32340 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_18120 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PACID_00050 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PACID_13810 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PACID_28850 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PACID_04220 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_29450 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_12380 GIY-YIG catalytic domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_06030 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PACID_21280 Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PACID_13010 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PACID_23100 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PACID_00110 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PACID_16150 DNA gyrase/topoisomerase IV, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PACID_00100 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PACID_16110 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PACID_28880 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:pbo03036]
D PACID_00950 Modification methylase NaeI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PACID_21540 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PACID_07280 Fructose-1,6-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_20610 Putative secreted protein K07192 FLOT; flotillin
D PACID_28410 Lsr2-like protein K26249 lsr2; nucleoid-associated protein Lsr2
D PACID_23930 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D PACID_00010 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PACID_29650 starvation-inducible DNA-binding protein or fine tangled pili major subunit K04047 dps; starvation-inducible DNA-binding protein
D PACID_02400 starvation-inducible DNA-binding protein or fine tangled pili major subunit K04047 dps; starvation-inducible DNA-binding protein
D PACID_18640 Transcriptional regulator, ArgP, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PACID_16970 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PACID_28650 Transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PACID_20380 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PACID_12790 Cell division protein FtsI/penicillin-binding protein 2 K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PACID_20440 ftsK; Cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D PACID_12870 POTRA domain-containing protein, FtsQ-type K03589 ftsQ; cell division protein FtsQ
D PACID_12840 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PACID_20370 Efflux ABC transporter, permease protein K09811 ftsX; cell division transport system permease protein
D PACID_12880 ftsZ; Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D PACID_12900 Cell division protein sepF K09772 sepF; cell division inhibitor SepF
D PACID_18740 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D PACID_20810 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein K03496 parA; chromosome partitioning protein
D PACID_34260 Putative partitioning protein ParA K03496 parA; chromosome partitioning protein
D PACID_34250 ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PACID_34280 gidB; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PACID_22150 xerC; Tyrosine recombinase xerC K03733 xerC; integrase/recombinase XerC
D PACID_20820 xerD; Tyrosine recombinase xerC 1 K04763 xerD; integrase/recombinase XerD
D PACID_11760 ParA/MinD ATPase-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PACID_13180 Putative sporulation transcription regulator whiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:pbo03400]
D PACID_10990 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D PACID_10360 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D PACID_05010 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PACID_28220 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D PACID_29120 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PACID_09130 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D PACID_13650 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PACID_24970 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PACID_17440 NTP pyrophosphohydrolase including oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PACID_07170 Hydrolase, NUDIX family K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D PACID_16250 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D PACID_16780 Uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PACID_23310 tag; 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D PACID_21530 Formamidopyrimidine-DNA glycosylase/AP lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PACID_23050 Formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D PACID_17640 Formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D PACID_26090 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PACID_32420 Apurinic endonuclease (APN1) K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D PACID_23100 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PACID_13010 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D PACID_25600 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D PACID_13110 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D PACID_13080 UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D PACID_13150 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D PACID_03290 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_20040 HRDC domain-containing protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_20080 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_24730 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PACID_25920 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PACID_25910 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PACID_25330 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PACID_17680 Guanylate kinase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PACID_09970 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PACID_10480 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D PACID_10470 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D PACID_18120 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PACID_00050 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PACID_13810 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PACID_28850 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PACID_04220 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_29450 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_12380 GIY-YIG catalytic domain-containing protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PACID_06030 DNA polymerase III, subunit gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PACID_23240 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_32340 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_00940 Putative DNA mismatch endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D PACID_20060 Exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PACID_20050 Putative exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PACID_20070 Exonuclease V, alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PACID_15250 recA; Protein RecA K03553 recA; recombination protein RecA
D PACID_18030 ruvA; Holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
D PACID_18020 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PACID_18040 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PACID_17590 Primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PACID_28100 radA; DNA repair protein radA K04485 radA; DNA repair protein RadA/Sms
D PACID_00070 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
D PACID_21610 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PACID_14460 recO; DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
D PACID_06050 recR; Recombination protein recR K06187 recR; recombination protein RecR
D PACID_20850 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D PACID_29910 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D PACID_30440 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D PACID_29610 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D PACID_00110 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PACID_16150 DNA gyrase/topoisomerase IV, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PACID_00100 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PACID_16110 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PACID_28880 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PACID_23930 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D PACID_14150 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D PACID_23810 dpo4; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D PACID_23690 Nucleotidyltransferase/DNA polymerase involved in DNA repair (UmuC) K14161 imuB; protein ImuB
D PACID_23680 Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D PACID_15970 ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PACID_17650 ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D PACID_27590 Hydrolase, NUDIX family K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D PACID_20830 Hydrolase, NUDIX family K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D PACID_16010 Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:pbo03029]
D PACID_21830 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PACID_10170 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D PACID_22060 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D PACID_25830 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D PACID_25850 fusA; Elongation factor G K02355 fusA; elongation factor G
D PACID_14350 era; GTP-binding protein Era K03595 era; GTPase
D PACID_10270 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PACID_13770 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PACID_17870 Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PACID_18340 Glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PACID_06470 Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PACID_31310 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PACID_18990 Glutamyl-tRNA(Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PACID_18980 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PACID_19000 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PACID_23240 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_32340 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PACID_07090 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PACID_07100 grpE; Protein grpE K03687 GRPE; molecular chaperone GrpE
D PACID_24930 60 kDa chaperonin 2 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_09060 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_24940 10 kDa chaperonin K04078 groES; chaperonin GroES
D PACID_23760 10 kDa chaperonin K04078 groES; chaperonin GroES
D PACID_14100 Chaperone protein DnaJ 1 K03686 dnaJ; molecular chaperone DnaJ
D PACID_07110 dnaJ; Chaperone protein DnaJ 2 K03686 dnaJ; molecular chaperone DnaJ
D PACID_19090 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PACID_11760 ParA/MinD ATPase-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PACID_22660 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PACID_11810 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_22650 Putative cytochrome oxidase assembly protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PACID_34310 Membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PACID_34220 Membrane-associated protein K14998 SURF1; surfeit locus 1 family protein
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pbo02000]
D PACID_05450 ABC transporter, ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D PACID_05440 msbA; Lipid A export ATP-binding/permease protein MsbA K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D PACID_01520 ABC transporter related protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PACID_10940 ABC-type multidrug transport system, ATPase and permease components K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PACID_26510 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PACID_32060 Putative ABC transporter permease/ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PACID_32050 Putative ABC transporter permease/ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PACID_05260 cydC; Thiol reductant ABC exporter, CydC subunit K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D PACID_05270 cydD; Thiol reductant ABC exporter, CydD subunit K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D PACID_12070 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D PACID_33100 ABC transporter, ATP-binding protein K21397 K21397; ABC transport system ATP-binding/permease protein
D PACID_02570 modA; Molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D PACID_02560 Sulfate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D PACID_12570 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D PACID_12580 Binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D PACID_12590 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D PACID_28260 ABC transporter, periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D PACID_28250 Binding-protein-dependent transport systems inner membrane component K02063 thiP; thiamine transport system permease protein
D PACID_28240 ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D PACID_06440 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_07640 ABC transporter, substrate-binding protein, QAT family K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_03610 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_07650 ABC transporter, substrate-binding protein, QAT family K02002 proX; glycine betaine/proline transport system substrate-binding protein
D PACID_07630 ABC transporter, permease protein K02001 proW; glycine betaine/proline transport system permease protein
D PACID_07620 proV; Glycine betaine/L-proline transport ATP binding subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D PACID_30520 Glycine betaine/choline-binding protein of an ABC-type transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D PACID_07690 Glycine betaine-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D PACID_30500 Proline/glycine betaine ABC transporter, permease protein K05846 opuBD; osmoprotectant transport system permease protein
D PACID_30510 Proline/glycine betaine ABC transporter, permease protein K05846 opuBD; osmoprotectant transport system permease protein
D PACID_07700 Putative ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein
D PACID_07720 Osmoprotectant ABC transporter, permease protein K05846 opuBD; osmoprotectant transport system permease protein
D PACID_30490 Putative ABC transporter ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PACID_07710 Glycine betaine/carnitin ABC transporter ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D PACID_19030 putative ABC transporter, substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D PACID_19040 putative ABC transporter permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D PACID_19050 ABC transporter ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D PACID_08530 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D PACID_22540 Bacterial extracellular solute-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D PACID_22560 ABC transporter, permease protein K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D PACID_22570 Maltose transport system permease protein MalG K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D PACID_07390 Sugar ABC transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D PACID_06910 Sugar ABC superfamily ATP binding cassette transporter substrate-binding protein K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D PACID_31980 ABC-type sugar transport system, periplasmic component K10117 msmE; raffinose/stachyose/melibiose transport system substrate-binding protein
D PACID_07380 Binding-protein-dependent transport systems inner membrane component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D PACID_31990 ABC-type sugar transport systems, permease component K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D PACID_06920 Sugar ABC superfamily ATP binding cassette transporter, membrane protein K10118 msmF; raffinose/stachyose/melibiose transport system permease protein
D PACID_07370 Carbohydrate ABC transporter membrane protein 2, CUT1 family K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D PACID_32000 ABC-type sugar transport system, permease component K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D PACID_06930 Sugar ABC superfamily ATP binding cassette transporter, membrane protein K10119 msmG; raffinose/stachyose/melibiose transport system permease protein
D PACID_27090 Bacterial extracellular solute-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein
D PACID_27080 ABC transporter, permease protein K17316 gtsB; glucose/mannose transport system permease protein
D PACID_27070 ABC transporter, permease protein K17317 gtsC; glucose/mannose transport system permease protein
D PACID_31760 Extracellular solute-binding protein family 1 K10236 thuE; trehalose/maltose transport system substrate-binding protein
D PACID_31770 Extracellular solute-binding protein family 1 K10236 thuE; trehalose/maltose transport system substrate-binding protein
D PACID_31750 Binding-protein-dependent transport systems inner membrane component K10237 thuF; trehalose/maltose transport system permease protein
D PACID_31740 Binding-protein-dependent transport systems inner membrane component K10238 thuG; trehalose/maltose transport system permease protein
D PACID_01110 Sugar ABC transporter substrate-binding protein K10200 ngcE; N-acetylglucosamine transport system substrate-binding protein
D PACID_01120 Putative ABC-type sugar transport system, permease component K10201 ngcF; N-acetylglucosamine transport system permease protein
D PACID_01130 Binding-protein-dependent transport systems inner membrane component K10202 ngcG; N-acetylglucosamine transport system permease protein
D PACID_18150 Carbohydrate ABC transporter substrate-binding protein, CUT1 family K10240 cebE; cellobiose transport system substrate-binding protein
D PACID_18160 Carbohydrate ABC transporter membrane protein K10241 cebF; cellobiose transport system permease protein
D PACID_18170 Binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D PACID_00170 ribose ABC transport system protein K10439 rbsB; ribose transport system substrate-binding protein
D PACID_00160 ribose ABC transport system protein K10440 rbsC; ribose transport system permease protein
D PACID_00150 ABC transporter protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D PACID_26220 ABC-type sugar transport system periplasmic component K23508 ytfQ; galactofuranose transport system substrate-binding protein
D PACID_02900 Sugar ABC transporter, solute-binding protein K23508 ytfQ; galactofuranose transport system substrate-binding protein
D PACID_26190 Monosaccharide ABC transporter membrane protein K23509 ytfT; galactofuranose transport system permease protein
D PACID_02880 ABC transporter permease K23509 ytfT; galactofuranose transport system permease protein
D PACID_02870 rbsC; permease component of ABC-type sugar transport system K23509 ytfT; galactofuranose transport system permease protein
D PACID_26200 Putative sugar ABC transporter, permease component K23509 ytfT; galactofuranose transport system permease protein
D PACID_02890 ABC transporter related protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D PACID_26210 ATP binding protein of ABC transporter, ATPase component K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D PACID_07350 Extracellular solute-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D PACID_31890 Extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D PACID_07330 Binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D PACID_31910 Binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D PACID_07340 Binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D PACID_31900 ABC-type sugar transport system, permease component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D PACID_24500 Basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D PACID_24480 Amino acid or sugar ABC transport system, permease protein K23535 nupB; general nucleoside transport system permease protein
D PACID_24470 Amino acid or sugar ABC transport system, permease protein K23536 nupC; general nucleoside transport system permease protein
D PACID_24490 ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D PACID_30090 ABC-type transport system, permease component K02069 STAR2; UDP-glucose/iron transport system permease protein
D PACID_21150 Solute-binding protein of ABC transporter system for sugars K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_21210 ABC-type sugar transport system, periplasmic component K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_08620 Tat (Twin-arginine translocation) pathway signal sequence K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_14030 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_30200 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_30970 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_25640 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_32150 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_05390 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_33810 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_32900 Extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D PACID_21200 Permease component of ABC-type sugar transporter K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_05410 Sugar transport system permease K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_14020 ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_30980 Binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_32140 Binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_32910 Putative ABC transporter permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_08630 ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_25620 Binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_33800 Binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_30210 Binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D PACID_05400 Putative sugar ABC transporter, permease component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_21190 ABC-type sugar transport system, permease component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_30220 Binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_14010 ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_30990 Binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_32130 Binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_32920 Putative ABC transporter permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_08640 ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_25610 Sugar ABC superfamily ATP binding cassette transporter, membrane protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_33790 Binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D PACID_27600 pstS; Phosphate ABC transporter, phosphate-binding protein PstS K02040 pstS; phosphate transport system substrate-binding protein
D PACID_27610 pstC; Phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D PACID_27620 Phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D PACID_27630 pstB; Phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PACID_01070 Amino acid ABC transporter, amino acid-binding/permease protein K10036 glnH; glutamine transport system substrate-binding protein
D PACID_01080 Polar amino acid ABC transporter, ATP-binding subunit K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D PACID_04820 Glutamate ABC transporter glutamate-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D PACID_14390 Amino acid-binding protein K10005 gluB; glutamate transport system substrate-binding protein
D PACID_04810 Glutamate ABC transporter permease protein K10006 gluC; glutamate transport system permease protein
D PACID_14400 Amino acid ABC transporter membrane protein K10006 gluC; glutamate transport system permease protein
D PACID_04800 Glutamine ABC superfamily ATP binding cassette transporter, permease protein K10007 gluD; glutamate transport system permease protein
D PACID_14410 Amino acid ABC transporter membrane protein K10007 gluD; glutamate transport system permease protein
D PACID_04830 Glutamate uptake system ATP-binding protein K10008 gluA; glutamate transport system ATP-binding protein [EC:7.4.2.1]
D PACID_27020 livK; Putative branched-chain amino acid ABC transporter, substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D PACID_27060 Branched-chain amino acid ABC transporter,permease protein K01997 livH; branched-chain amino acid transport system permease protein
D PACID_27050 livM; Putative branched-chain amino acid ABC transporter, permease component K01998 livM; branched-chain amino acid transport system permease protein
D PACID_27040 Putatice branched-chain amino acid ABC transporter, ATPase component K01995 livG; branched-chain amino acid transport system ATP-binding protein
D PACID_27030 livF; Putative branched-chain amino acid ABC transporter, ATPase component K01996 livF; branched-chain amino acid transport system ATP-binding protein
D PACID_24760 ABC-type metal ion transport system, periplasmic component/surface antigen K02073 metQ; D-methionine transport system substrate-binding protein
D PACID_24780 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D PACID_24770 Methionine import ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D PACID_11280 Bacterial extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PACID_11290 Bacterial extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PACID_11300 Bacterial extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PACID_31380 Amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D PACID_11270 ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D PACID_31370 Amino acid ABC transporter membrane protein 1, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein
D PACID_31360 Amino acid ABC transporter membrane protein 2, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein
D PACID_11260 ABC-transporter, ATPase component K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D PACID_29300 Bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D PACID_29310 ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D PACID_29320 ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D PACID_29330 Oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D PACID_29340 ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D PACID_02280 extracellular solute-binding protein family 5 protein K13889 gsiB; glutathione transport system substrate-binding protein
D PACID_25460 Bacterial extracellular solute-binding protein, family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D PACID_25490 ABC transporter, permease protein K13890 gsiC; glutathione transport system permease protein
D PACID_02310 ABC transporter K13890 gsiC; glutathione transport system permease protein
D PACID_02300 oppC; Putative oligopeptide ABC transporter, permease protein OppC K13891 gsiD; glutathione transport system permease protein
D PACID_25480 ABC transporter, permease protein K13891 gsiD; glutathione transport system permease protein
D PACID_25470 Oligopeptide/dipeptide ABC superfamily ATP binding cassette transporter K13892 gsiA; glutathione transport system ATP-binding protein
D PACID_02520 Extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_19930 Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_28700 Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_06700 Extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PACID_02550 Binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_19920 ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_28690 ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_06710 dppB; ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PACID_02540 Binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_19910 ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_28680 ABC-type dipeptide/oligopeptide/nickel transport system, permease component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_06720 Binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PACID_02530 Putative dipeptide/oligopeptide transport protein (ABC superfamily, atp_bind) K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PACID_28670 Putative phosphonate C-P lyase system protein PhnK K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PACID_06730 Putative oligopeptide ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PACID_27790 Periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D PACID_27800 Transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D PACID_27810 iron ABC transporter K23187 fepG; iron-siderophore transport system permease protein
D PACID_27820 ABC transporter related protein K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D PACID_00830 Iron transport system substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D PACID_00820 Iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D PACID_26800 LigA protein K02015 ABC.FEV.P; iron complex transport system permease protein
D PACID_04230 ABC transporter-related protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PACID_22250 ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PACID_00810 ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PACID_27750 Anchored repeat-type ABC transporter, permease subunit K09819 ABC.MN.P; manganese/iron transport system permease protein
D PACID_27760 ABC transporter related protein K09820 ABC.MN.A; manganese/iron transport system ATP-binding protein
D PACID_08880 Cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D PACID_08890 cbiQ; Cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D PACID_08870 cbiM; Cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D PACID_08900 Cobalt ABC transporter, ATP-binding protein K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D PACID_20900 BioY multi-domain protein K03523 bioY; biotin transport system substrate-specific component
D PACID_20880 Cobalt transport protein K16783 bioN; biotin transport system permease protein
D PACID_20890 ABC transporter, ATP-binding protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D PACID_25270 Putative integral membrane protein K16927 cbrT; energy-coupling factor transport system substrate-specific component
D PACID_00600 hypothetical protein K16927 cbrT; energy-coupling factor transport system substrate-specific component
D PACID_25250 ABC transporter-associated permease K16785 ecfT; energy-coupling factor transport system permease protein
D PACID_25260 ABC transporter, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D PACID_11350 Periplasmic solute binding family protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D PACID_11330 ABC 3 transport family protein K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D PACID_11340 ABC transporter, ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D PACID_12660 ABC-2 type transporter K09694 nodJ; lipooligosaccharide transport system permease protein
D PACID_12670 ABC-2 type transporter K09694 nodJ; lipooligosaccharide transport system permease protein
D PACID_12680 ABC transporter related protein K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D PACID_23540 ABC-type antimicrobial peptide transport system, permease component K09813 hrtB; hemin transport system permease protein
D PACID_23550 Putative ABC transport ATP-binding protein K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D PACID_05970 Putative exporter of polyketide antibiotics K25149 narB; polyether ionophore transport system permease protein
D PACID_10740 Anibiotic ABC transporter efflux pump K25149 narB; polyether ionophore transport system permease protein
D PACID_13960 ABC transporter membrane-spanning protein K25149 narB; polyether ionophore transport system permease protein
D PACID_10750 ABC transporter related protein K25150 narA; polyether ionophore transport system ATP-binding protein
D PACID_05960 ABC transporter related protein K25150 narA; polyether ionophore transport system ATP-binding protein
D PACID_13970 ABC transporter related protein K25150 narA; polyether ionophore transport system ATP-binding protein
D PACID_20370 Efflux ABC transporter, permease protein K09811 ftsX; cell division transport system permease protein
D PACID_20380 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D PACID_00200 ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_08700 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_06860 Putative ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_33510 ABC-2 type transport system permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_14220 ABC-type Na+ efflux pump permease component-like protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_22640 ABC transporter efflux protein, DrrB family K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_23590 ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_08750 Putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D PACID_00210 putative ABC transporter, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_08690 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_08760 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_22630 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_33500 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_06870 Putative ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_23600 Nod factor export ATP-binding protein I K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_01020 Putative ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_07670 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_14210 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_26480 ccmA; Heme ABC exporter, ATP-binding protein CcmA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_32580 Putative ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PACID_01440 Efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D PACID_00030 ABC transporter K02004 ABC.CD.P; putative ABC transport system permease protein
D PACID_03550 Macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D PACID_10520 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D PACID_06110 Efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D PACID_07180 Efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D PACID_01450 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_00020 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_32670 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_03540 Putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_02220 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_10510 Putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_06100 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_07190 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PACID_22480 sufC; FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D PACID_22220 Sodium/bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PACID_29460 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D PACID_32830 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D PACID_34080 IolT3 (Myo-inositol transporter iolT3) K06609 iolT; MFS transporter, SP family, major inositol transporter
D PACID_34110 MFS family major facilitator transporter K06609 iolT; MFS transporter, SP family, major inositol transporter
D PACID_09370 MFS transporter, sugar porter (SP) family protein K06609 iolT; MFS transporter, SP family, major inositol transporter
D PACID_06520 IolT2 (Myo-inositol transporter iolT2) K06609 iolT; MFS transporter, SP family, major inositol transporter
D PACID_06590 Major facilitator superfamily MFS_1 K06610 iolF; MFS transporter, SP family, inositol transporter
D PACID_11050 Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PACID_11060 Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PACID_31660 Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PACID_29990 MFS family major facilitator transporter, proline/betaine:cation symporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PACID_31200 Proline/betaine transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D PACID_29790 Transporter, major facilitator family protein K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D PACID_02670 Transporter, major facilitator family protein K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D PACID_02020 Permease of the major facilitator superfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D PACID_06800 Major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D PACID_05360 efflux_EmrB multi-domain protein K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D PACID_27530 Major facilitator superfamily (MFS) transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D PACID_23160 Transporter, major facilitator family protein K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein
D PACID_06250 Permease of the major facilitator superfamily K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D PACID_16120 Transporter, major facilitator family protein K06902 UMF1; MFS transporter, UMF1 family
D PACID_08020 ptsP; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D PACID_04760 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PACID_08030 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PACID_21790 Phosphocarrier, HPr family K02784 ptsH; phosphocarrier protein HPr
D PACID_19180 Phosphotransferase system, EIIB K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D PACID_04770 Phosphotransferase system K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D PACID_14130 PTS system, mannitol-specific IIC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D PACID_21780 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D PACID_08200 PTS system glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D PACID_08190 PTS family glucitol (Glu) porter component IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D PACID_21770 PTS system, glucitol/sorbitol-specific IIB component and second of two IIC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D PACID_21760 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D PACID_08180 PTS system, glucitol/sorbitol-specific enzyme II, C2 component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D PACID_08110 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D PACID_00930 Phosphoenolpyruvate-dependent sugar phosphotransferase system K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200]
D PACID_08140 PTS system, Lactose/Cellobiose specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D PACID_00910 PTS system, Lactose/Cellobiose specific IIB subunit K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200]
D PACID_08130 PTS system Galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D PACID_00920 PTS system, galactitol-specific IIC component K02775 gatC; galactitol PTS system EIIC component
D PACID_26570 pptE; Phosphoenolpyruvate-protein phosphoryltransferase PptE K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D PACID_33730 Glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D PACID_17970 Ion channel K10716 kch; voltage-gated potassium channel
D PACID_28590 Ammonium transporter K03320 amt; ammonium transporter, Amt family
D PACID_14910 von Willebrand factor type A domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D PACID_14920 von Willebrand factor type A domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D PACID_00650 Von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D PACID_00640 von Willebrand factor type A domain-containing protein K07114 yfbK; Ca-activated chloride channel homolog
D PACID_09420 Putative large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D PACID_33590 Transporter, small conductance mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel
D PACID_11900 Mg2+/Co2+ transporter K03284 corA; magnesium transporter
D PACID_06300 CRCB multi-domain protein K06199 crcB; fluoride exporter
D PACID_06310 crcB; CrcB-like protein K06199 crcB; fluoride exporter
D PACID_09710 hypothetical protein K24915 TMEM175; TMEM175 potassium channel family protein
D PACID_24520 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_04360 CBS domain membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_04370 Membrane transporter with CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_14340 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_00550 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D PACID_07310 Sugar (Glycoside-Pentoside-Hexuronide) transporter K16209 lacS; lactose/raffinose/galactose permease
D PACID_02990 Na-galactoside symporter K16210 togT; oligogalacturonide transporter
D PACID_11150 Lysine-specific permease K11733 lysP; lysine-specific permease
D PACID_23570 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D PACID_27240 Amino acid permease membrane protein K11738 ansP; L-asparagine permease
D PACID_29220 Amino acid transporter K16235 mmuP; S-methylmethionine transporter
D PACID_11870 Amino acid permease membrane protein K14052 puuP; putrescine importer
D PACID_05340 Tat (Twin-arginine translocation) pathway signal sequence K20265 gadC; glutamate:GABA antiporter
D PACID_32230 Cation-efflux transport protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D PACID_34290 Small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D PACID_04550 putative permease, DMT superfamily K03298 TC.DME; drug/metabolite transporter, DME family
D PACID_14170 Integral membrane protein K11939 rhtA; inner membrane transporter RhtA
D PACID_12630 Gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D PACID_05220 Transporter, lactate permease (LctP) family protein K03303 lutP; lactate permease
D PACID_02050 nhaA; Na(+)/H(+) antiporter nhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D PACID_05090 Putative sodium/proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D PACID_27880 Putative monovalent cation/proton antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D PACID_30470 TrkA-C domain-containing protein K11105 cvrA; potassium/hydrogen antiporter
D PACID_16280 TrkA-C domain-containing protein K03499 trkA; trk/ktr system potassium uptake protein
D PACID_16290 Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D PACID_09200 Xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D PACID_33380 Chloride transporter, ClC family K03281 clcA; chloride channel protein, CIC family
D PACID_32740 Chloride transporter, ClC family K03281 clcA; chloride channel protein, CIC family
D PACID_02060 mntH; Mn2+ and Fe2+ transporter K03322 mntH; manganese transport protein
D PACID_04000 Arsenite-transporting ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D PACID_06280 arsB; Putative membrane efflux protein K03893 arsB; arsenical pump membrane protein
D PACID_30620 RfbX family protein involved in the export of O-antigen and teichoic acid K06409 spoVB; stage V sporulation protein B
D PACID_06210 mviN; Integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D PACID_06640 Putative AEC family transporter K13936 mdcF; malonate transporter and related proteins
D PACID_29810 kup; putative potassium transport system protein kup K03549 kup; KUP system potassium uptake protein
D PACID_18630 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO
D PACID_30400 Branched-chain amino acid export protein large subunit K26605 azlC; branched chain amino acid efflux pump
D PACID_30410 AzlD multi-domain protein K26606 azlD; branched chain amino acid efflux pump
D PACID_14250 Putative integral membrane protein K09125 yhhQ; queuosine precursor transporter
D PACID_31550 Membrane protein K22736 VIT; vacuolar iron transporter family protein
D PACID_12840 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PACID_06780 hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PACID_32380 Putative ferrous iron permease EfeU K07243 FTR; high-affinity iron transporter
D PACID_32370 PbrT family lead (Pb2+) uptake porter K07224 efeO; iron uptake system component EfeO
D PACID_32360 Tat-translocated enzyme K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D PACID_12920 DivIVA domain-containing protein K03646 tolA; colicin import membrane protein
D PACID_22620 K(+)-insensitive pyrophosphate-energized proton pump K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D PACID_02190 Sodium ion-translocating decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D PACID_02180 Putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit K23351 gcdC; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit gamma
D PACID_02170 OAD_gamma domain-containing protein K23352 gcdD; glutaconyl-CoA/methylmalonyl-CoA decarboxylase subunit delta
D PACID_27960 Cytochrome C biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D PACID_01670 Cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D PACID_02700 narG; Nitrate reductase, alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D PACID_02710 narH; Nitrate reductase, beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D PACID_02730 Respiratory nitrate reductase, gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D PACID_07890 Capsular exopolysaccharide biosynthesis protein K25588 K25588; tyrosine-protein kinase [EC:2.7.10.3]
D PACID_21000 Nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D PACID_23890 FeoA domain-containing protein K04758 feoA; ferrous iron transport protein A
D PACID_23880 feoB; Ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D PACID_03110 MgtC family magnesium (Mg2+) transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D PACID_31930 MgtC family magnesium (Mg2+) transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:pbo02044]
D PACID_12320 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PACID_29060 Helicase/secretion neighborhood ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PACID_01250 Type II/IV secretion system protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PACID_29050 TadB domain-containing protein K12510 tadB; tight adherence protein B
D PACID_01270 Type II secretion system F domain-containing protein K12511 tadC; tight adherence protein C
D PACID_12910 YGGT family protein K02221 yggT; YggT family protein
D PACID_13780 ComEA protein K02237 comEA; competence protein ComEA
D PACID_26580 Cytidine and deoxycytidylate deaminase zinc-binding region K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D PACID_13790 ComEC/Rec2-like protein K02238 comEC; competence protein ComEC
D PACID_14720 Putative integral membrane protein K07344 trbL; type IV secretion system protein TrbL
D PACID_20210 secA; Protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PACID_18000 secD; Translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D PACID_25980 secE; Preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PACID_17990 secF; Export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D PACID_13220 SecG multi-domain protein K03075 secG; preprotein translocase subunit SecG
D PACID_25440 secY; Preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D PACID_21390 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PACID_21450 ftsY; Signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PACID_18010 yajC; Translocase subunit K03210 yajC; preprotein translocase subunit YajC
D PACID_34310 Membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PACID_20730 hypothetical protein K03116 tatA; sec-independent protein translocase protein TatA
D PACID_11750 MttA/family protein K03117 tatB; sec-independent protein translocase protein TatB
D PACID_20720 tatC; Twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:pbo02042]
D PACID_24520 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_04360 CBS domain membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_04370 Membrane transporter with CBS domains K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_14340 CBS domain-containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PACID_10440 Channel protein, hemolysin III family protein K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:pbo02022]
D PACID_08060 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D PACID_08070 phoB; Phosphate regulon transcriptional regulatory protein PhoB, Sensory transduction protein regX3 K07776 regX3; two-component system, OmpR family, response regulator RegX3
D PACID_29820 Osmosensitive K+ channel histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D PACID_29830 DNA-binding response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D PACID_32190 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D PACID_32180 Transcriptional regulatory protein, C-terminal domain-containing protein K07669 mprA; two-component system, OmpR family, response regulator MprA
D PACID_20260 Signal transduction histidine kinase K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D PACID_20270 Two component transcriptional regulator, winged helix family K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D PACID_01570 Sensor protein K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PACID_07050 Two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D PACID_07060 Two component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D PACID_30060 Putative transcriptional regulator K02483 K02483; two-component system, OmpR family, response regulator
D PACID_31540 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein K02483 K02483; two-component system, OmpR family, response regulator
D PACID_08710 Histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D PACID_01360 Response regulator receiver domain-containing protein, LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D PACID_08720 Response regulator receiver domain-containing protein K07693 desR; two-component system, NarL family, response regulator DesR
D PACID_19800 ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3]
D PACID_12980 Response regulator receiver domain-containing protein K22010 pdtaR; two-component system, response regulator PdtaR
C 02035 Bacterial motility proteins [BR:pbo02035]
D PACID_12320 hypothetical protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D PACID_29060 Helicase/secretion neighborhood ATPase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D PACID_01250 Type II/IV secretion system protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pbo04812]
D PACID_24980 MEMO_like multi-domain protein K06990 MEMO1; MEMO1 family protein
D PACID_12880 ftsZ; Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D PACID_18740 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein
D PACID_20810 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein K03496 parA; chromosome partitioning protein
D PACID_34260 Putative partitioning protein ParA K03496 parA; chromosome partitioning protein
D PACID_34250 ParB-like protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:pbo04147]
D PACID_07280 Fructose-1,6-bisphosphate aldolase K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
D PACID_01050 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_10000 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PACID_13190 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PACID_09730 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D PACID_13200 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PACID_12960 Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PACID_12350 Peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PACID_28720 Renal dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D PACID_20610 Putative secreted protein K07192 FLOT; flotillin
D PACID_24930 60 kDa chaperonin 2 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_09060 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PACID_07090 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D PACID_06420 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PACID_24900 IMP dehydrogenase family protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PACID_24910 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PACID_25830 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D PACID_20680 Histidine triad domain-containing protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PACID_00350 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_00390 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D PACID_22220 Sodium/bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D PACID_23190 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_23200 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_32400 AMP-binding enzyme K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_19490 Putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PACID_25430 kad; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PACID_17980 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PACID_20300 arlY; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PACID_30900 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PACID_31170 Alpha-1,3/4-fucosidase K01206 FUCA; alpha-L-fucosidase [EC:3.2.1.51]
D PACID_30820 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D PACID_26600 GHMP kinase, N-terminal domain-containing protein K00849 galK; galactokinase [EC:2.7.1.6]
D PACID_30710 Family 13 glycosyl hydrolase K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PACID_19160 glgB; 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PACID_33710 Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D PACID_11930 Glutamine synthetase type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_12010 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PACID_28200 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PACID_19890 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_31600 4-phosphoerythronate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_08240 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PACID_24620 Bifunctional purine biosynthesis protein purH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PACID_16890 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PACID_22670 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PACID_08280 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PACID_13210 Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PACID_08040 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D PACID_13140 Phosphoglycerate mutase family protein K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:pbo02048]
D PACID_29910 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D PACID_29920 CRISPR-associated protein cas2 K09951 cas2; CRISPR-associated protein Cas2
D PACID_29860 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D PACID_29870 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA
D PACID_29880 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC
D PACID_29890 CRISPR-associated protein, Cas5e family K19125 casD; CRISPR system Cascade subunit CasD
D PACID_29900 Cse3 family CRISPR-associated protein K19126 casE; CRISPR system Cascade subunit CasE
D PACID_07530 Type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D PACID_10570 HsdR family type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D PACID_17380 Type I restriction-modification system restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D PACID_07540 Restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D PACID_10560 Putative specificity protein s K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D PACID_07550 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D PACID_10550 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D PACID_17420 Type I restriction-modification system modification subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D PACID_23000 Eco57I restriction endonuclease K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D PACID_00950 Modification methylase NaeI K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D PACID_31460 mrr; Restriction system protein K07448 mrr; restriction system protein
D PACID_02610 PemK-like protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D PACID_27440 Toxin-antitoxin system, toxin component, MazF family K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D PACID_17610 PemK multi-domain protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D PACID_33030 Toxin-antitoxin system, toxin component, MazF family K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D PACID_13850 hypothetical protein K26983 mazE3; antitoxin MazE3
D PACID_17600 hypothetical protein K26987 mazE7; antitoxin MazE7
D PACID_33040 Antitoxin MazE9 K26989 mazE9; antitoxin MazE9
D PACID_14240 SpoVT_AbrB multi-domain protein K19156 prlF; antitoxin PrlF
D PACID_28950 Cytotoxic translational repressor of toxin-antitoxin stability system K06218 relE; mRNA interferase RelE/StbE
D PACID_02430 Plasmid stabilization system K06218 relE; mRNA interferase RelE/StbE
D PACID_02440 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D PACID_17110 HipA N-terminal domain-containing protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D PACID_17100 HTH_3 multi-domain protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D PACID_24850 PspC domain-containing protein K03973 pspC; phage shock protein C
D PACID_10690 Toxin-antitoxin system, toxin component, RelE family K07334 higB-1; toxin HigB-1
D PACID_10760 Toxin-antitoxin system, toxin component, RelE family K07334 higB-1; toxin HigB-1
D PACID_10770 Plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1
D PACID_11990 Plasmid maintenance system antidote protein K21498 higA-1; antitoxin HigA-1
D PACID_10700 Plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1
D PACID_27360 PilT protein domain-containing protein K19686 vapC; ribonuclease VapC [EC:3.1.-.-]
D PACID_27350 PSK_trans_fac multi-domain protein K19687 vapB; antitoxin VapB
D PACID_12880 ftsZ; Cell division protein ftsZ K03531 ftsZ; cell division protein FtsZ
D PACID_20770 Glutamyl-Q tRNA(Asp) synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_25780 Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PACID_19090 Aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:pbo04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:pbo04090]
C 01504 Antimicrobial resistance genes [BR:pbo01504]
D PACID_10930 Putative aminoglycoside 3'-phosphotransferase K00897 aphA; kanamycin kinase [EC:2.7.1.95]
D PACID_32300 23S ribosomal RNA methyltransferase ErmML K00561 ermC; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184]
D PACID_27530 Major facilitator superfamily (MFS) transporter K18833 cmr; MFS transporter, DHA3 family, multidrug efflux protein
D PACID_23490 putative chloramphenicol O-acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D PACID_06800 Major facilitator superfamily MFS_1 K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D PACID_28640 Beta-lactamase related protein K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D PACID_28620 D-amino-acid amidase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:pbo00537]
D PACID_28720 Renal dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pbo03100]
D PACID_13410 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_13420 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_09490 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_04520 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D PACID_30780 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_19730 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_09390 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_23260 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D PACID_18460 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PACID_18540 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D PACID_10080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PACID_27000 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D PACID_01850 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PACID_16410 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D PACID_20540 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PACID_09920 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D PACID_20530 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PACID_26970 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D PACID_06820 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_10100 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_16420 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_22810 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D PACID_23280 tRNA-His K14226 tRNA-His; tRNA His
D PACID_00250 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D PACID_23790 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_10040 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_12970 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_21060 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_06350 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D PACID_26930 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PACID_23740 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PACID_23710 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D PACID_14860 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_19950 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_19960 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_26050 tRNA-Met K14230 tRNA-Met; tRNA Met
D PACID_27010 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D PACID_17430 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PACID_29190 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PACID_23010 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D PACID_30790 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_06000 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_30870 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_30610 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D PACID_28790 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PACID_09010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PACID_26060 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D PACID_25990 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D PACID_26070 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D PACID_10090 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_16400 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_16430 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_20400 tRNA-Val K14237 tRNA-Val; tRNA Val
D PACID_10140 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_14500 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_10280 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_20950 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D PACID_10150 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_10290 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_20940 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_14510 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D PACID_10160 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_10300 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_20930 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D PACID_14520 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PACID_06460 Oxidoreductase, aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D PACID_31620 Oxidoreductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D PACID_15040 Oxidoreductase, aldo/keto reductase family protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D PACID_26420 Geranylgeranyl reductase family protein K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]
D PACID_02010 putative dinucleotide-binding enzyme K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D PACID_24290 Dihydrolipoamide dehydrogenase K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D PACID_11040 Alcohol dehydrogenase, zinc-binding protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PACID_05040 Zinc-binding alcohol dehydrogenase family protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D PACID_27840 Mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15]
D PACID_27300 Alkyl hydroperoxide reductase subunit F K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D PACID_10350 Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PACID_16370 msrB; Methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D PACID_02480 Acetyltransferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D PACID_02490 Glutathione transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D PACID_02500 Glutathione S-transferase domain-containing protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D PACID_02510 Glutathione transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D PACID_23780 Thiol peroxidase, Bcp-type K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PACID_11140 Thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PACID_27290 ahpC; Peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D PACID_17450 putative redox protein, regulator of disulfide bond formation K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D PACID_10060 Dyp-type peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D PACID_04490 Putative arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D PACID_00470 nrdG; Anaerobic ribonucleoside-triphosphate reductase-activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D PACID_25000 Radical SAM K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D PACID_23510 Protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D PACID_23290 tam; Trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D PACID_16960 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D PACID_04390 Putative acetyltransferase K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D PACID_31060 aat; Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D PACID_18220 Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D PACID_31520 Membrane-associated lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D PACID_33420 ApbE multi-domain protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D PACID_31590 Carbohydrate kinase, FGGY family protein K00862 eryA; erythritol kinase (D-erythritol 1-phosphate-forming) [EC:2.7.1.215]
D PACID_06990 Kinase-PPPase K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D PACID_11950 glnE; Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D PACID_28110 DNA integrity scanning protein DisA K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D PACID_26780 Phosphoenolpyruvate synthase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]
D PACID_08680 putative RNase III regulator YmdB K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D PACID_02840 Lactonase drp35 K02352 drp35; lactonase [EC:3.1.1.-]
D PACID_31960 Carboxylesterase type B K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D PACID_23180 Acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PACID_00340 Protein tyrosine/serine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D PACID_17850 Protein tyrosine/serine phosphatase K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D PACID_13400 Iojap-like protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D PACID_20170 PHP domain-containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D PACID_28560 Phosphoglycerate mutase family protein K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D PACID_03590 Choline-sulfatase K01133 betC; choline-sulfatase [EC:3.1.6.6]
D PACID_09870 Hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PACID_19280 hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-]
D PACID_16820 Endo-1,3(4)-beta-glucanase K01180 E3.2.1.6; endo-1,3(4)-beta-glucanase [EC:3.2.1.6]
D PACID_33780 Glycoside hydrolase family 43 K06113 abnA; arabinan endo-1,5-alpha-L-arabinosidase [EC:3.2.1.99]
D PACID_30190 hypothetical protein K27494 exoMA1; D-arabinan exo alpha-(1,3)/(1,5)-arabinofuranosidase (non-reducing end) [EC:3.2.1.225]
D PACID_31680 putative N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PACID_22170 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PACID_16440 Putative deacetylase (Putative secreted protein) K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D PACID_06230 Polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D PACID_03520 Putative hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D PACID_12750 ATPase family associated with various cellular activities (AAA) K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PACID_14890 ATPase family associated with various cellular activities (AAA) K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PACID_00610 ATPase family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D PACID_14480 Myosin-crossreactive antigen K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D PACID_25080 YjeF C-terminal domain family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D PACID_06600 rhaU; L-rhamnose 1-epimerase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D PACID_29380 Peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D PACID_24370 Respiratory-chain NADH dehydrogenase family protein K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D PACID_32270 ATPase, P-type (Transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D PACID_02370 copA; Copper-exporting ATPase CopA K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D PACID_00870 Cadmium-exporting ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D PACID_34130 iolH; IolH (Myo-inositol catabolism IolH protein) (Isomerase:epimerase) K06605 iolH; myo-inositol catabolism protein IolH
D PACID_05230 putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE K18928 lldE; L-lactate dehydrogenase complex protein LldE
D PACID_05240 Iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D PACID_05250 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D PACID_05530 FdrA family protein K02381 fdrA; FdrA protein
D PACID_22460 SUF system FeS assembly protein, NifU family K04488 iscU; nitrogen fixation protein NifU and related proteins
D PACID_03860 merA; Pyridine nucleotide-disulfide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D PACID_14930 Pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
D PACID_23090 Putative amino-acid acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D PACID_05140 Lipoprotein A-like protein K21688 rpfB; resuscitation-promoting factor RpfB
C 99987 Cofactor metabolism
D PACID_21820 ABC-1 domain-containing protein K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
D PACID_28840 DoxX protein K15977 K15977; putative oxidoreductase
D PACID_14140 DoxX protein K15977 K15977; putative oxidoreductase
D PACID_02150 Putative Acetate-CoA Ligase (ADP-forming) K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D PACID_08210 GutM domain-containing protein K02466 gutM; glucitol operon activator protein
D PACID_20100 cspA; Cold shock-like protein CspA K03704 cspA; cold shock protein
D PACID_09170 Cold-shock DNA-binding domain-containing protein K03704 cspA; cold shock protein
D PACID_15820 DNA-binding anti-repressor-like protein K07741 antB; anti-repressor protein
C 99974 Translation
D PACID_16750 Exonuclease of the beta-lactamase fold involved in RNA processing K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D PACID_23910 ATP-dependent Clp protease adapter protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PACID_22800 tig; Trigger factor K03545 tig; trigger factor
D PACID_20360 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D PACID_21250 Mg chelatase-like protein K07391 comM; magnesium chelatase family protein
D PACID_33910 OsmC-like protein K07397 yhfA; putative redox protein
D PACID_27950 ResB-like family protein K07399 resB; cytochrome c biogenesis protein
C 99976 Replication and repair
D PACID_12250 putative methylated DNA-protein cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D PACID_10490 DNA recombination RmuC-like protein K09760 rmuC; DNA recombination protein RmuC
D PACID_05990 HhH-GPD family protein K07457 K07457; endonuclease III related protein
D PACID_21260 TIGR00252 family protein K07460 yraN; putative endonuclease
D PACID_21240 DNA protecting protein DprA K04096 smf; DNA processing protein
D PACID_04200 Recombination factor protein RarA K07478 ycaJ; putative ATPase
D PACID_17840 Recombination factor protein RarA K07478 ycaJ; putative ATPase
D PACID_03840 Transposase IS3/IS911 K07483 K07483; transposase
D PACID_00740 Transposase K07493 K07493; putative transposase
D PACID_17400 Transposase, Mutator family protein K07493 K07493; putative transposase
D PACID_34270 Transposase, Mutator family protein K07493 K07493; putative transposase
D PACID_26730 Transposase, Mutator family K07493 K07493; putative transposase
D PACID_10870 Transposase K07493 K07493; putative transposase
D PACID_27660 Transposase, Mutator family protein K07493 K07493; putative transposase
D PACID_03320 Transposase, mutator family K07493 K07493; putative transposase
D PACID_03930 Transposase, mutator family K07493 K07493; putative transposase
D PACID_29930 Transposase, Mutator family protein K07493 K07493; putative transposase
D PACID_30140 Transposase, Mutator family protein K07493 K07493; putative transposase
D PACID_22590 Transposase, mutator family K07493 K07493; putative transposase
D PACID_22940 Transposase, mutator family K07493 K07493; putative transposase
D PACID_15790 Transposase, Mutator family protein K07493 K07493; putative transposase
D PACID_18890 integrase K07497 K07497; putative transposase
D PACID_04040 transposase K07497 K07497; putative transposase
D PACID_22870 transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D PACID_12170 PspA/IM30 family protein K03969 pspA; phage shock protein A
D PACID_06040 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D PACID_04060 Sugar (Glycoside-Pentoside-Hexuronide) transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D PACID_03900 Sodium:galactoside symporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D PACID_32750 Amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D PACID_07160 Amino acid permease K03293 TC.AAT; amino acid transporter, AAT family
D PACID_16830 Amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D PACID_23660 Amino acid permease-associated region K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D PACID_07070 Phosphate transporter family protein K03306 TC.PIT; inorganic phosphate transporter, PiT family
D PACID_30840 Sodium:solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D PACID_33640 Transporter, Sodium/bile acid symporter family K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D PACID_05610 Permease for cytosine/purines, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D PACID_11370 Permease, cytosine/purine, uracil, thiamine, allantoin family K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D PACID_07150 putative permease membrane region K07085 K07085; putative transport protein
C 99978 Cell growth
D PACID_34300 R3H domain-containing protein K06346 jag; spoIIIJ-associated protein
D PACID_10590 putative DNA recombinase K06400 spoIVCA; site-specific DNA recombinase
C 99993 Cell motility
C 99995 Signaling proteins
D PACID_16880 cstA; Carbon starvation protein K06200 cstA; carbon starvation protein
D PACID_27450 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D PACID_33410 ACT domain-containing protein K07166 K07166; ACT domain-containing protein
D PACID_14310 Phosphate starvation-inducible protein PhoH, predicted ATPase K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D PACID_10450 PhoH family protein K07175 phoH2; PhoH-like ATPase
D PACID_26080 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D PACID_31830 Glycosyl hydrolase family 25 K07273 acm; lysozyme
D PACID_03570 RND_mfp multi-domain protein K02005 ABC.CD.TX; HlyD family secretion protein
D PACID_22790 putative permease K11744 tqsA; AI-2 transport protein TqsA
C 99994 Others
D PACID_08050 Phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D PACID_06240 putative tellerium resistance protein K05794 terC; tellurite resistance protein TerC
D PACID_13090 TerC family membrane protein K05794 terC; tellurite resistance protein TerC
D PACID_09120 CutC family protein K06201 cutC; copper homeostasis protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PACID_22380 Acetyltransferase, GNAT family K02348 elaA; ElaA protein
D PACID_29770 chaB multi-domain protein K06197 chaB; cation transport regulator
D PACID_28920 Helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D PACID_27890 RND superfamily drug efflux protein K06994 K06994; putative drug exporter of the RND superfamily
D PACID_01950 MMPL family protein K06994 K06994; putative drug exporter of the RND superfamily
D PACID_26630 Phospholipase, patatin family K07001 K07001; NTE family protein
D PACID_22510 sufB; FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D PACID_22500 sufD; FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D PACID_29680 Putative tRNA processing ribonuclease BN K07058 K07058; membrane protein
D PACID_16660 Putative ribonuclease K07058 K07058; membrane protein
D PACID_06680 Membrane protein ribonuclease BN family protein K07058 K07058; membrane protein
D PACID_23670 Glyoxalase family protein K04750 phnB; PhnB protein
D PACID_07790 LemA family protein K03744 lemA; LemA protein
D PACID_30020 SNARE associated Golgi protein-like protein K03975 dedA; membrane-associated protein
D PACID_07930 SNARE-like protein K03975 dedA; membrane-associated protein
D PACID_12050 Membrane protein DedA family K03975 dedA; membrane-associated protein
D PACID_07450 YhgE/Pip C-terminal domain-containing protein K01421 yhgE; putative membrane protein
D PACID_01960 membrane associated protein K01421 yhgE; putative membrane protein
D PACID_06500 Bacterial membrane flanked domain-containing protein K08981 K08981; putative membrane protein
D PACID_07610 hypothetical protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D PACID_03580 putative arylsulfatase regulator K06871 K06871; uncharacterized protein
D PACID_10420 Thioredoxin K06888 K06888; uncharacterized protein
D PACID_21360 KH domain-containing protein K06960 K06960; uncharacterized protein
D PACID_02460 GCN5-related N-acetyltransferase K06975 K06975; uncharacterized protein
D PACID_06170 hypothetical protein K06975 K06975; uncharacterized protein
D PACID_21970 Acetyltransferase, GNAT family K06976 K06976; uncharacterized protein
D PACID_17260 Glyoxalase family protein K06996 K06996; uncharacterized protein
D PACID_21590 Pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D PACID_13570 Putative glyoxalase/bleomycin resistance protein K07032 K07032; uncharacterized protein
D PACID_08310 Metalloprotease-like protein K07054 K07054; uncharacterized protein
D PACID_22410 Membrane glycine rich protein K07054 K07054; uncharacterized protein
D PACID_00280 PilT protein domain-containing protein K07064 K07064; uncharacterized protein
D PACID_10860 hypothetical protein K07064 K07064; uncharacterized protein
D PACID_14230 hypothetical protein K07064 K07064; uncharacterized protein
D PACID_28290 TIGR01777 family protein K07071 K07071; uncharacterized protein
D PACID_01380 DNA polymerase K07075 K07075; uncharacterized protein
D PACID_21710 Nucleotidyltransferase domain-containing protein K07075 K07075; uncharacterized protein
D PACID_10810 putative nucleotidyltransferase K07075 K07075; uncharacterized protein
D PACID_01740 ytnM; YtnM protein K07090 K07090; uncharacterized protein
D PACID_05550 Integral membrane protein K07090 K07090; uncharacterized protein
D PACID_31470 Transport protein K07090 K07090; uncharacterized protein
D PACID_21880 Putative permease K07090 K07090; uncharacterized protein
D PACID_33230 Putative integral membrane protein K07090 K07090; uncharacterized protein
D PACID_29180 Ser/Thr protein phosphatase family protein K07098 K07098; uncharacterized protein
D PACID_11410 Phosphoribosyl transferase domain-containing protein K07101 K07101; uncharacterized protein
D PACID_33870 NAD-dependent epimerase/dehydratase K07118 K07118; uncharacterized protein
D PACID_27910 Oxidoreductase, short chain dehydrogenase/reductase family protein K07124 K07124; uncharacterized protein
D PACID_32430 Short chain dehydrogenase K07124 K07124; uncharacterized protein
D PACID_02470 putative ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D PACID_03360 AAA family ATPase K07133 K07133; uncharacterized protein
D PACID_11880 Zn-ribbon protein possibly nucleic acid-binding-like protein K07164 K07164; uncharacterized protein
D PACID_34320 hypothetical protein K08998 K08998; uncharacterized protein
D PACID_16640 hypothetical protein K08999 K08999; uncharacterized protein
D PACID_10020 hypothetical protein K09009 K09009; uncharacterized protein
D PACID_15050 GatB_Yqey, GatB/Yqey K09117 K09117; uncharacterized protein
D PACID_19980 integral membrane protein K09118 K09118; uncharacterized protein
D PACID_24990 AMMECR1 protein K09141 K09141; uncharacterized protein
D PACID_31720 Sensory box protein K09155 K09155; uncharacterized protein
D PACID_33400 hypothetical protein K09157 K09157; uncharacterized protein
D PACID_09640 hypothetical protein K09164 K09164; uncharacterized protein
D PACID_06510 Membrane-flanked domain-containing protein K09167 K09167; uncharacterized protein
D PACID_02360 hypothetical protein K09763 K09763; uncharacterized protein
D PACID_32240 YCII-related protein K09780 K09780; uncharacterized protein
D PACID_24010 hypothetical protein K09791 K09791; uncharacterized protein
D PACID_24950 LigA K09807 K09807; uncharacterized protein
D PACID_29370 hypothetical protein K09861 K09861; uncharacterized protein
D PACID_20220 hypothetical protein K09927 K09927; uncharacterized protein
D PACID_21170 hypothetical protein K09955 K09955; uncharacterized protein
D PACID_32110 hypothetical protein K09955 K09955; uncharacterized protein
D PACID_07030 Putative glycosyl hydrolase K09992 K09992; uncharacterized protein
D PACID_21840 hypothetical protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 26, 2024