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Transcription Machinery - Phanerochaete carnosa
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
E PHACADRAFT_246551 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
E PHACADRAFT_247866 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
E PHACADRAFT_258319 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
E PHACADRAFT_251231 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
D Pol II specific subunits
E PHACADRAFT_105721 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
E PHACADRAFT_175251 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E PHACADRAFT_160812 hypothetical protein K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
D Pol I, II, III common subunits
E PHACADRAFT_251606 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PHACADRAFT_152837 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PHACADRAFT_212353 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
E PHACADRAFT_258769 hypothetical protein K03122 TFIIA1; transcription initiation factor TFIIA large subunit
E PHACADRAFT_254362 hypothetical protein K03123 TFIIA2; transcription initiation factor TFIIA small subunit
D TFIIB
E PHACADRAFT_249341 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB
D TFIID
E PHACADRAFT_256913 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PHACADRAFT_24603 hypothetical protein K23358 TAF1; transcription initiation factor TFIID subunit 1, fungi type [EC:2.3.1.48]
E PHACADRAFT_156702 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E PHACADRAFT_180260 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E PHACADRAFT_262519 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E PHACADRAFT_105415 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E PHACADRAFT_177851 hypothetical protein K03135 TAF11; transcription initiation factor TFIID subunit 11
E PHACADRAFT_258595 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E PHACADRAFT_59222 hypothetical protein K03127 TAF13; transcription initiation factor TFIID subunit 13
D TFIIE
E PHACADRAFT_251430 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
E PHACADRAFT_176739 hypothetical protein K03137 TFIIE2; transcription initiation factor TFIIE subunit beta
D TFIIF
E PHACADRAFT_249234 hypothetical protein K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha
E PHACADRAFT_253017 hypothetical protein K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
D TFIIH
E PHACADRAFT_185111 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E PHACADRAFT_258371 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E PHACADRAFT_171015 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E PHACADRAFT_252066 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E PHACADRAFT_256068 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E PHACADRAFT_210756 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E PHACADRAFT_153133 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E PHACADRAFT_84769 hypothetical protein K06634 CCNH; cyclin H
C Mediator complex
D Head
E PHACADRAFT_250784 hypothetical protein K15134 SRB4; mediator of RNA polymerase II transcription subunit 17, fungi type
D Middle
E PHACADRAFT_200608 hypothetical protein K15146 MED4; mediator of RNA polymerase II transcription subunit 4
E PHACADRAFT_134473 hypothetical protein K15147 MED5; mediator of RNA polymerase II transcription subunit 5
E PHACADRAFT_134734 hypothetical protein K15148 MED7; mediator of RNA polymerase II transcription subunit 7
E PHACADRAFT_249193 hypothetical protein K15151 MED10; mediator of RNA polymerase II transcription subunit 10
E PHACADRAFT_246695 hypothetical protein K15152 MED21; mediator of RNA polymerase II transcription subunit 21
E PHACADRAFT_257810 hypothetical protein K15153 MED31; mediator of RNA polymerase II transcription subunit 31
D Tail
E PHACADRAFT_174499 hypothetical protein K15156 MED14; mediator of RNA polymerase II transcription subunit 14
D CDK-module
E PHACADRAFT_170622 hypothetical protein K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23]
E PHACADRAFT_136142 hypothetical protein K15161 CCNC; cyclin-C
E PHACADRAFT_196411 hypothetical protein K15163 SRB8; mediator of RNA polymerase II transcription subunit 12, fungi type
E PHACADRAFT_181524 hypothetical protein K15165 SSN2; mediator of RNA polymerase II transcription subunit 13, fungi type
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
E PHACADRAFT_258454 hypothetical protein K06062 PCAF; histone acetyltransferase [EC:2.3.1.48]
E PHACADRAFT_205724 hypothetical protein K08874 TRRAP; transformation/transcription domain-associated protein
E PHACADRAFT_88053 hypothetical protein K11313 SUPT3H; transcription initiation protein SPT3
E PHACADRAFT_47290 hypothetical protein K11359 SPT7; transcriptional activator SPT7
E PHACADRAFT_173464 hypothetical protein K11360 SPT8; transcriptional activator SPT8
E PHACADRAFT_213459 hypothetical protein K11361 SPT20; transcription factor SPT20
E PHACADRAFT_163214 hypothetical protein K11314 TADA2A; transcriptional adapter 2-alpha
E PHACADRAFT_196124 hypothetical protein K11315 TADA3; transcriptional adapter 3
E PHACADRAFT_156702 hypothetical protein K03128 TAF2; transcription initiation factor TFIID subunit 2
E PHACADRAFT_180260 hypothetical protein K03130 TAF5; transcription initiation factor TFIID subunit 5
E PHACADRAFT_262519 hypothetical protein K03131 TAF6; transcription initiation factor TFIID subunit 6
E PHACADRAFT_105415 hypothetical protein K03134 TAF10; transcription initiation factor TFIID subunit 10
E PHACADRAFT_258595 hypothetical protein K03126 TAF12; transcription initiation factor TFIID subunit 12
E PHACADRAFT_127078 hypothetical protein K11364 SGF29; SAGA-associated factor 29
E PHACADRAFT_264439 hypothetical protein K11365 SGF73; SAGA-associated factor 73
E PHACADRAFT_258377 hypothetical protein K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
E PHACADRAFT_140190 hypothetical protein K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12]
E PHACADRAFT_210427 hypothetical protein K12830 SF3B3; splicing factor 3B subunit 3
D BAF/PBAF complex
E PHACADRAFT_253961 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E PHACADRAFT_252171 hypothetical protein K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
E PHACADRAFT_100439 hypothetical protein K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
E PHACADRAFT_205920 hypothetical protein K11652 ACTL6B; actin-like protein 6B
D SWI/SNF complex
E PHACADRAFT_83217 hypothetical protein K11771 SWI1; SWI/SNF chromatin-remodeling complex subunit SWI1
E PHACADRAFT_179732 hypothetical protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
E PHACADRAFT_253961 hypothetical protein K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
E PHACADRAFT_263701 hypothetical protein K11768 ARP9; actin-related protein 9
D RSC complex
E PHACADRAFT_246748 hypothetical protein K11756 RSC1_2; chromatin structure-remodeling complex subunit RSC1/2
E PHACADRAFT_91191 hypothetical protein K11761 NPL6; chromatin structure-remodeling complex protein RSC7
E PHACADRAFT_111789 hypothetical protein K11763 RSC9; chromatin structure-remodeling complex subunit RSC9
E PHACADRAFT_263701 hypothetical protein K11768 ARP9; actin-related protein 9
E PHACADRAFT_261963 hypothetical protein K11770 SFH1; chromatin structure-remodeling complex subunit SFH1
E PHACADRAFT_179732 hypothetical protein K11786 STH1_SNF2; ATP-dependent helicase STH1/SNF2 [EC:5.6.2.-]
D Others
C Other transcription-related factors
D Transcription elongation factors
E PHACADRAFT_263043 hypothetical protein K03145 TFIIS; transcription elongation factor S-II
E PHACADRAFT_93212 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
E PHACADRAFT_255920 hypothetical protein K11292 SUPT6H; transcription elongation factor SPT6
D Transcription termination factor
E PHACADRAFT_61321 hypothetical protein K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
E PHACADRAFT_93103 hypothetical protein K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E PHACADRAFT_146128 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E PHACADRAFT_167242 hypothetical protein K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E PHACADRAFT_134399 hypothetical protein K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E PHACADRAFT_251967 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PHACADRAFT_247423 hypothetical protein K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E PHACADRAFT_200838 hypothetical protein K06100 SYMPK; symplekin
E PHACADRAFT_250223 hypothetical protein K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
E PHACADRAFT_69227 hypothetical protein K14845 RAI1; RAT1-interacting protein
E PHACADRAFT_199007 hypothetical protein K10706 SETX; senataxin [EC:5.6.2.-]
E PHACADRAFT_248153 hypothetical protein K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8]
D PAF1 complex
E PHACADRAFT_264766 hypothetical protein K15174 PAF1; RNA polymerase II-associated factor 1
E PHACADRAFT_145235 hypothetical protein K15175 CDC73; parafibromin
E PHACADRAFT_258943 hypothetical protein K15176 CTR9; RNA polymerase-associated protein CTR9
E PHACADRAFT_263737 hypothetical protein K15177 LEO1; RNA polymerase-associated protein LEO1
E PHACADRAFT_254665 hypothetical protein K15178 RTF1; RNA polymerase-associated protein RTF1
D NELF complex
D Super elongation complex (SEC)
E PHACADRAFT_210006 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
D Little elongation complex (LEC)
E PHACADRAFT_210006 hypothetical protein K15183 ELL; RNA polymerase II elongation factor ELL
D Brd4/P-TEFb complex
D BUR kinase complex
E PHACADRAFT_141194 hypothetical protein K15562 BUR1; serine/threonine-protein kinase BUR1 [EC:2.7.11.22 2.7.11.23]
D CTDK-I complex
E PHACADRAFT_262307 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E PHACADRAFT_99614 hypothetical protein K15565 CTK3; CTD kinase subunit gamma
D 7SK RNP complex
E PHACADRAFT_136674 hypothetical protein K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-]
D DBIRD complex
D Others
E PHACADRAFT_144887 hypothetical protein K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-]
E PHACADRAFT_250402 hypothetical protein K21751 DR1; down-regulator of transcription 1
E PHACADRAFT_263281 hypothetical protein K21752 DRAP1; Dr1-associated corepressor
E PHACADRAFT_170963 hypothetical protein K15193 SPTY2D1; protein SPT2
E PHACADRAFT_204575 hypothetical protein K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
E PHACADRAFT_162559 hypothetical protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E PHACADRAFT_146736 hypothetical protein K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16]
E PHACADRAFT_265533 hypothetical protein K20826 RPAP1; RNA polymerase II-associated protein 1
E PHACADRAFT_158921 hypothetical protein K23002 RPAP3; RNA polymerase II-associated protein 3
E PHACADRAFT_204723 hypothetical protein K23002 RPAP3; RNA polymerase II-associated protein 3
E PHACADRAFT_251884 hypothetical protein K06666 TUP1; general transcriptional corepressor TUP1
E PHACADRAFT_55115 hypothetical protein K06665 SSN6; general transcriptional corepressor CYC8
E PHACADRAFT_102406 hypothetical protein K12412 MCM1; pheromone receptor transcription factor
E PHACADRAFT_91337 hypothetical protein K24104 GPN; GPN-loop GTPase
E PHACADRAFT_137707 hypothetical protein K24104 GPN; GPN-loop GTPase
E PHACADRAFT_263524 hypothetical protein K24104 GPN; GPN-loop GTPase
E PHACADRAFT_202032 hypothetical protein K24104 GPN; GPN-loop GTPase
E PHACADRAFT_201728 hypothetical protein K24104 GPN; GPN-loop GTPase
B RNA polymerase III system
C RNA polymerase III
D Core subunits
E PHACADRAFT_169499 hypothetical protein K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
E PHACADRAFT_100019 hypothetical protein K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
E PHACADRAFT_161317 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PHACADRAFT_179740 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PHACADRAFT_116447 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol III specific subunits
E PHACADRAFT_121372 hypothetical protein K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3
E PHACADRAFT_213756 hypothetical protein K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4
E PHACADRAFT_110888 hypothetical protein K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5
E PHACADRAFT_117896 hypothetical protein K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6
E PHACADRAFT_251378 hypothetical protein K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7
E PHACADRAFT_263362 hypothetical protein K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8
E PHACADRAFT_212338 hypothetical protein K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11
D Pol I, II, III common subunits
E PHACADRAFT_251606 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PHACADRAFT_152837 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PHACADRAFT_212353 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D TFIIIA
E PHACADRAFT_133931 hypothetical protein K09191 GTF3A; general transcription factor IIIA
D TFIIIB
E PHACADRAFT_256913 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
E PHACADRAFT_144858 hypothetical protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
E PHACADRAFT_31958 hypothetical protein K15196 BRF1; transcription factor IIIB 90 kDa subunit
E PHACADRAFT_204514 hypothetical protein K15198 BDP1; transcription factor TFIIIB component B''
D TFIIIC
E PHACADRAFT_150922 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E PHACADRAFT_209176 hypothetical protein K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48]
E PHACADRAFT_205839 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
D TFIIIC, fungi type
E PHACADRAFT_205839 hypothetical protein K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
E PHACADRAFT_150922 hypothetical protein K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
E PHACADRAFT_161079 hypothetical protein K15205 TFC6; transcription factor C subunit 6
E PHACADRAFT_190138 hypothetical protein K15206 TFC7; transcription factor C subunit 7
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
E PHACADRAFT_96477 hypothetical protein K15210 SNAPC3; snRNA-activating protein complex subunit 3
D Octamer transcription factors
D Others
E PHACADRAFT_252689 hypothetical protein K25817 MAF1; repressor of RNA polymerase III transcription MAF1
B RNA polymerase I system
C RNA polymerase I
D Core subunits
E PHACADRAFT_115318 hypothetical protein K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
E PHACADRAFT_161317 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PHACADRAFT_179740 hypothetical protein K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1
E PHACADRAFT_116447 hypothetical protein K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2
D Pol I specific subunits
E PHACADRAFT_261280 hypothetical protein K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49
E PHACADRAFT_258586 hypothetical protein K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43
E PHACADRAFT_179818 hypothetical protein K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12
D Pol I, II, III common subunits
E PHACADRAFT_251606 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
E PHACADRAFT_152837 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
E PHACADRAFT_212353 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
C Basal transcription factors
D SL1/TIF-1B
E PHACADRAFT_256913 hypothetical protein K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein
C Other transcription-related factors
D UBF
D Transcription initiation factors
E PHACADRAFT_25394 hypothetical protein K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3
E PHACADRAFT_87096 hypothetical protein K15219 RRN7; RNA polymerase I-specific transcription initiation factor RRN7
E PHACADRAFT_85783 hypothetical protein K15222 RRN11; RNA polymerase I-specific transcription initiation factor RRN11
E PHACADRAFT_259812 hypothetical protein K15223 UAF30; upstream activation factor subunit UAF30
D Transcription elongation factors
E PHACADRAFT_93212 hypothetical protein K15172 SUPT5H; transcription elongation factor SPT5
D NoRC (nucleolar remodeling complex)
E PHACADRAFT_262623 hypothetical protein K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
E PHACADRAFT_248237 hypothetical protein K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
D CTDK-I complex
E PHACADRAFT_262307 hypothetical protein K15564 CTK2; CTD kinase subunit beta
E PHACADRAFT_99614 hypothetical protein K15565 CTK3; CTD kinase subunit gamma
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
D Sigma factors
C Other transcription-related factors
D RNA polymerase-associated proteins
D Transcription elongation factors
D Transcription termination factor
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
E PHACADRAFT_249341 hypothetical protein K03124 TFIIB; transcription initiation factor TFIIB
D TFE
E PHACADRAFT_251430 hypothetical protein K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024