+F Repair protein KO #

  DNA Repair and Recombination Proteins - Petrimonas mucosa

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E ING2E5A_1705 ung; Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00148} K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ING2E5A_3040 mutY; Adenine DNA glycosylase {ECO:0000303|PubMed:14961129, ECO:0000303|PubMed:25995449} K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ING2E5A_1590 nth; Endonuclease III {ECO:0000255|HAMAP-Rule:MF_00942} K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D ING2E5A_0175 NUDIX hydrolase {ECO:0000313|EMBL:ADQ78853,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ING2E5A_1735 putative protein {ECO:0000313|EMBL:CEA15861,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ING2E5A_0617 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000255|HAMAP-Rule:MF_00116} K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D ING2E5A_1722 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ING2E5A_1705 ung; Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00148} K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E ING2E5A_3040 mutY; Adenine DNA glycosylase {ECO:0000303|PubMed:14961129, ECO:0000303|PubMed:25995449} K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E ING2E5A_1590 nth; Endonuclease III {ECO:0000255|HAMAP-Rule:MF_00942} K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E ING2E5A_1466 nfo; putative endonuclease 4 {ECO:0000255|HAMAP-Rule:MF_00152} K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E ING2E5A_3045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E ING2E5A_0260 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E ING2E5A_0600 uvrA_1; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A E ING2E5A_2718 uvrA_3; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A E ING2E5A_1471 uvrB; UvrABC system protein B {ECO:0000255|HAMAP-Rule:MF_00204} K03702 uvrB; excinuclease ABC subunit B E ING2E5A_0253 uvrC; UvrABC system protein C {ECO:0000255|HAMAP-Rule:MF_00203} K03703 uvrC; excinuclease ABC subunit C E ING2E5A_2444 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ING2E5A_0260 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F ING2E5A_2441 rpoB; DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321} K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F ING2E5A_2442 rpoC; DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322} K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F ING2E5A_2347 rpoA; DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059} K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F ING2E5A_2467 mfd; Transcription-repair-coupling factor {ECO:0000255|HAMAP-Rule:MF_00969} K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E ING2E5A_2447 mutS_3; DNA mismatch repair protein MutS {ECO:0000255|HAMAP-Rule:MF_00096} K03555 mutS; DNA mismatch repair protein MutS E ING2E5A_1396 mutS2; Endonuclease MutS2 {ECO:0000255|HAMAP-Rule:MF_00092} K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E ING2E5A_3016 mutL; DNA mismatch repair protein MutL {ECO:0000255|HAMAP-Rule:MF_00149} K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E ING2E5A_0128 xseA; Exodeoxyribonuclease 7 large subunit {ECO:0000255|HAMAP-Rule:MF_00378} K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E ING2E5A_0130 Exodeoxyribonuclease 7 small subunit {ECO:0000256|SAAS:SAAS00198685} K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E ING2E5A_0035 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E ING2E5A_1229 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E ING2E5A_1712 DNA polymerase III, delta subunit {ECO:0000313|EMBL:EGK02935,1} K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E ING2E5A_1326 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E ING2E5A_0234 polC_1; DNA polymerase III PolC-type {ECO:0000255|HAMAP-Rule:MF_00356} K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ING2E5A_1230 polC_3; DNA polymerase III PolC-type {ECO:0000255|HAMAP-Rule:MF_00356} K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E ING2E5A_0396 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E ING2E5A_2444 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E ING2E5A_3041 ssb; Single-stranded DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_00984} K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E ING2E5A_2472 recA; Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268} K03553 recA; recombination protein RecA E ING2E5A_1695 ruvA; Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031} K03550 ruvA; holliday junction DNA helicase RuvA E ING2E5A_0644 ruvB; Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016} K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ING2E5A_1546 ruvC; Crossover junction endodeoxyribonuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034} K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E ING2E5A_3035 priA; Primosomal protein N' {ECO:0000255|HAMAP-Rule:MF_00983} K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E ING2E5A_2472 recA; Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268} K03553 recA; recombination protein RecA E ING2E5A_0006 radA; DNA repair protein RadA homolog K04485 radA; DNA repair protein RadA/Sms E ING2E5A_3070 recF; DNA replication and repair protein RecF {ECO:0000255|HAMAP-Rule:MF_00365} K03629 recF; DNA replication and repair protein RecF E ING2E5A_2555 recG5; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ING2E5A_0859 recG1; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E ING2E5A_3045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E ING2E5A_1763 recO; DNA repair protein RecO {ECO:0000255|HAMAP-Rule:MF_00201} K03584 recO; DNA repair protein RecO (recombination protein O) E ING2E5A_2526 recR; Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017} K06187 recR; recombination protein RecR E ING2E5A_2417 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E ING2E5A_1695 ruvA; Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031} K03550 ruvA; holliday junction DNA helicase RuvA E ING2E5A_0644 ruvB; Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016} K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E ING2E5A_1546 ruvC; Crossover junction endodeoxyribonuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034} K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E ING2E5A_2083 recB; RecBCD enzyme subunit RecB {ECO:0000255|HAMAP-Rule:MF_01485} K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Other HR factor E ING2E5A_0829 cas1-2; CRISPR-associated protein Cas1 2 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E ING2E5A_1356 yjgR; putative protein YjgR K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F ING2E5A_1688 gyrA; DNA gyrase subunit A {ECO:0000255|HAMAP-Rule:MF_01897} K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F ING2E5A_2217 gyrB; DNA gyrase subunit B {ECO:0000255|HAMAP-Rule:MF_01898} K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F ING2E5A_1751 topA; DNA topoisomerase 1 {ECO:0000255|HAMAP-Rule:MF_00952} K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F ING2E5A_0201 DNA-binding protein HRL18 K03530 hupB; DNA-binding protein HU-beta F ING2E5A_3039 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F ING2E5A_3045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F ING2E5A_1763 recO; DNA repair protein RecO {ECO:0000255|HAMAP-Rule:MF_00201} K03584 recO; DNA repair protein RecO (recombination protein O) F ING2E5A_2526 recR; Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017} K06187 recR; recombination protein RecR F ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F ING2E5A_3044 recQ3; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ING2E5A_2109 recQ1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F ING2E5A_0600 uvrA_1; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A F ING2E5A_2718 uvrA_3; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A F ING2E5A_1471 uvrB; UvrABC system protein B {ECO:0000255|HAMAP-Rule:MF_00204} K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D ING2E5A_1096 dinB2; DNA polymerase IV 2 K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D ING2E5A_0188 impB; Protein ImpB K03502 umuC; DNA polymerase V D ING2E5A_2168 umuC; Protein UmuC K03502 umuC; DNA polymerase V D ING2E5A_2169 umuD; Protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] D ING2E5A_0187 lexA; LexA repressor {ECO:0000255|HAMAP-Rule:MF_00015} K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D ING2E5A_2472 recA; Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268} K03553 recA; recombination protein RecA D ING2E5A_2417 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D ING2E5A_3041 ssb; Single-stranded DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_00984} K03111 ssb; single-strand DNA-binding protein D ING2E5A_0490 recX; Regulatory protein RecX {ECO:0000255|HAMAP-Rule:MF_01114} K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D ING2E5A_0175 NUDIX hydrolase {ECO:0000313|EMBL:ADQ78853,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ING2E5A_1735 putative protein {ECO:0000313|EMBL:CEA15861,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D ING2E5A_0617 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000255|HAMAP-Rule:MF_00116} K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D ING2E5A_1753 Vitamin B12-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D ING2E5A_3084 putative protein {ECO:0000313|EMBL:CEA17173,1} K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024