+F Repair protein KO
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DNA Repair and Recombination Proteins - Petrimonas mucosa
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
C BER (base exicision repair)
D DNA glycosylases
E ING2E5A_1705 ung; Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00148} K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ING2E5A_3040 mutY; Adenine DNA glycosylase {ECO:0000303|PubMed:14961129, ECO:0000303|PubMed:25995449} K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ING2E5A_1590 nth; Endonuclease III {ECO:0000255|HAMAP-Rule:MF_00942} K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D ING2E5A_0175 NUDIX hydrolase {ECO:0000313|EMBL:ADQ78853,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ING2E5A_1735 putative protein {ECO:0000313|EMBL:CEA15861,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ING2E5A_0617 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000255|HAMAP-Rule:MF_00116} K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D ING2E5A_1722 ada; Bifunctional transcriptional activator/DNA repair enzyme Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ING2E5A_1705 ung; Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00148} K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E ING2E5A_3040 mutY; Adenine DNA glycosylase {ECO:0000303|PubMed:14961129, ECO:0000303|PubMed:25995449} K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E ING2E5A_1590 nth; Endonuclease III {ECO:0000255|HAMAP-Rule:MF_00942} K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E ING2E5A_1466 nfo; putative endonuclease 4 {ECO:0000255|HAMAP-Rule:MF_00152} K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E ING2E5A_3045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E ING2E5A_0260 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E ING2E5A_0600 uvrA_1; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A
E ING2E5A_2718 uvrA_3; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A
E ING2E5A_1471 uvrB; UvrABC system protein B {ECO:0000255|HAMAP-Rule:MF_00204} K03702 uvrB; excinuclease ABC subunit B
E ING2E5A_0253 uvrC; UvrABC system protein C {ECO:0000255|HAMAP-Rule:MF_00203} K03703 uvrC; excinuclease ABC subunit C
E ING2E5A_2444 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ING2E5A_0260 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ING2E5A_2441 rpoB; DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321} K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ING2E5A_2442 rpoC; DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322} K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ING2E5A_2347 rpoA; DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059} K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F ING2E5A_2467 mfd; Transcription-repair-coupling factor {ECO:0000255|HAMAP-Rule:MF_00969} K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E ING2E5A_2447 mutS_3; DNA mismatch repair protein MutS {ECO:0000255|HAMAP-Rule:MF_00096} K03555 mutS; DNA mismatch repair protein MutS
E ING2E5A_1396 mutS2; Endonuclease MutS2 {ECO:0000255|HAMAP-Rule:MF_00092} K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E ING2E5A_3016 mutL; DNA mismatch repair protein MutL {ECO:0000255|HAMAP-Rule:MF_00149} K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E ING2E5A_0128 xseA; Exodeoxyribonuclease 7 large subunit {ECO:0000255|HAMAP-Rule:MF_00378} K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E ING2E5A_0130 Exodeoxyribonuclease 7 small subunit {ECO:0000256|SAAS:SAAS00198685} K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E ING2E5A_0035 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E ING2E5A_1229 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E ING2E5A_1712 DNA polymerase III, delta subunit {ECO:0000313|EMBL:EGK02935,1} K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E ING2E5A_1326 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E ING2E5A_0234 polC_1; DNA polymerase III PolC-type {ECO:0000255|HAMAP-Rule:MF_00356} K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ING2E5A_1230 polC_3; DNA polymerase III PolC-type {ECO:0000255|HAMAP-Rule:MF_00356} K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E ING2E5A_0396 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E ING2E5A_2444 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E ING2E5A_3041 ssb; Single-stranded DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_00984} K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E ING2E5A_2472 recA; Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268} K03553 recA; recombination protein RecA
E ING2E5A_1695 ruvA; Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031} K03550 ruvA; holliday junction DNA helicase RuvA
E ING2E5A_0644 ruvB; Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016} K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ING2E5A_1546 ruvC; Crossover junction endodeoxyribonuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034} K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E ING2E5A_3035 priA; Primosomal protein N' {ECO:0000255|HAMAP-Rule:MF_00983} K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E ING2E5A_2472 recA; Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268} K03553 recA; recombination protein RecA
E ING2E5A_0006 radA; DNA repair protein RadA homolog K04485 radA; DNA repair protein RadA/Sms
E ING2E5A_3070 recF; DNA replication and repair protein RecF {ECO:0000255|HAMAP-Rule:MF_00365} K03629 recF; DNA replication and repair protein RecF
E ING2E5A_2555 recG5; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ING2E5A_0859 recG1; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E ING2E5A_3045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E ING2E5A_1763 recO; DNA repair protein RecO {ECO:0000255|HAMAP-Rule:MF_00201} K03584 recO; DNA repair protein RecO (recombination protein O)
E ING2E5A_2526 recR; Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017} K06187 recR; recombination protein RecR
E ING2E5A_2417 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E ING2E5A_1695 ruvA; Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031} K03550 ruvA; holliday junction DNA helicase RuvA
E ING2E5A_0644 ruvB; Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016} K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E ING2E5A_1546 ruvC; Crossover junction endodeoxyribonuclease RuvC {ECO:0000255|HAMAP-Rule:MF_00034} K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E ING2E5A_2083 recB; RecBCD enzyme subunit RecB {ECO:0000255|HAMAP-Rule:MF_01485} K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E ING2E5A_0829 cas1-2; CRISPR-associated protein Cas1 2 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E ING2E5A_1356 yjgR; putative protein YjgR K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F ING2E5A_1688 gyrA; DNA gyrase subunit A {ECO:0000255|HAMAP-Rule:MF_01897} K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F ING2E5A_2217 gyrB; DNA gyrase subunit B {ECO:0000255|HAMAP-Rule:MF_01898} K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F ING2E5A_1751 topA; DNA topoisomerase 1 {ECO:0000255|HAMAP-Rule:MF_00952} K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F ING2E5A_0201 DNA-binding protein HRL18 K03530 hupB; DNA-binding protein HU-beta
F ING2E5A_3039 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F ING2E5A_3045 recJ; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F ING2E5A_1763 recO; DNA repair protein RecO {ECO:0000255|HAMAP-Rule:MF_00201} K03584 recO; DNA repair protein RecO (recombination protein O)
F ING2E5A_2526 recR; Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017} K06187 recR; recombination protein RecR
F ING2E5A_0649 ligA; DNA ligase {ECO:0000255|HAMAP-Rule:MF_01588} K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F ING2E5A_3044 recQ3; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F ING2E5A_2109 recQ1; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F ING2E5A_0600 uvrA_1; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A
F ING2E5A_2718 uvrA_3; UvrABC system protein A {ECO:0000255|HAMAP-Rule:MF_00205} K03701 uvrA; excinuclease ABC subunit A
F ING2E5A_1471 uvrB; UvrABC system protein B {ECO:0000255|HAMAP-Rule:MF_00204} K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D ING2E5A_1096 dinB2; DNA polymerase IV 2 K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D ING2E5A_0188 impB; Protein ImpB K03502 umuC; DNA polymerase V
D ING2E5A_2168 umuC; Protein UmuC K03502 umuC; DNA polymerase V
D ING2E5A_2169 umuD; Protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D ING2E5A_0187 lexA; LexA repressor {ECO:0000255|HAMAP-Rule:MF_00015} K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D ING2E5A_2472 recA; Protein RecA {ECO:0000255|HAMAP-Rule:MF_00268} K03553 recA; recombination protein RecA
D ING2E5A_2417 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D ING2E5A_3041 ssb; Single-stranded DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_00984} K03111 ssb; single-strand DNA-binding protein
D ING2E5A_0490 recX; Regulatory protein RecX {ECO:0000255|HAMAP-Rule:MF_01114} K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D ING2E5A_0175 NUDIX hydrolase {ECO:0000313|EMBL:ADQ78853,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ING2E5A_1735 putative protein {ECO:0000313|EMBL:CEA15861,1} K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D ING2E5A_0617 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000255|HAMAP-Rule:MF_00116} K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D ING2E5A_1753 Vitamin B12-dependent ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
D ING2E5A_3084 putative protein {ECO:0000313|EMBL:CEA17173,1} K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024