+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Stutzerimonas stutzeri A1501
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PST_1231 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
D PST_3620 putative serine kinases of RIO1 family K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D PST_3793 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C PST_1232 era; GTP-binding protein Era K03595 era; GTPase
C PST_0958 obg; GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PST_3289 dksA; suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor
C PST_3603 DnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor
C PST_3311 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
C PST_0839 nusB; NusB protein K03625 nusB; transcription antitermination protein NusB
C PST_0772 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PST_1261 probable pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PST_0726 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PST_0019 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PST_1116 rsmC; ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PST_3995 methyltransferase, putative K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PST_3945 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PST_4201 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PST_1074 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PST_1072 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PST_2739 SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
C 23S rRNA modification factors
D PST_2691 rrmA; rRNA methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PST_3658 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PST_2948 ftsJ; cell division protein FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D PST_3066 predicted SAM-dependent methyltransferase K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D PST_0932 nucleotide methyltransferase, putative K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D PST_3782 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PST_2866 predicted SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PST_4010 conserved hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PST_3301 predicted SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D PST_3869 protein involved in catabolism of external DNA K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D PST_2388 methylase, putative K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D PST_1847 predicted SAM-dependent methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D PST_3034 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PST_2231 predicted Fe-S-cluster redox enzyme K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PST_2670 ygcA; probable RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D PST_1422 rluA; pseudouridine synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PST_0857 pseudouridylate synthase, 23S RNA-specific K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PST_2326 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PST_2630 rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D PST_3642 rluD; pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PST_3719 probable pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D PST_1452 S4 domain protein K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
B ribosomal protein modification factors
C PST_3238 rimI; peptide n-acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C PST_0288 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C PST_1192 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
C PST_1747 putative FeS oxidoreductase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C PST_3275 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
C PST_2330 probable DNA methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
C PST_2307 conserved hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
B rRNA processing factors
C PST_1231 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PST_2631 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C PST_1020 cafA; cytoplasmic axial filament protein K08301 rng; ribonuclease G [EC:3.1.26.-]
C PST_3957 predicted endonuclease involved in recombination K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C PST_3905 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
C PST_2507 ATP-dependent RNA helicase, DEAD box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C PST_1232 era; GTP-binding protein Era K03595 era; GTPase
C PST_3795 ribosome-associated GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PST_3027 engA; GTP-binding protein EngA K03977 engA; GTPase
C PST_0958 obg; GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C PST_3667 hflX; GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C PST_0024 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PST_0459 spoT; guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PST_3309 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C PST_3312 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C PST_3783 iojap-related protein K09710 ybeB; ribosome-associated protein
C PST_3763 predicted metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C PST_3320 predicted RNA-binding protein containing KH domain, possibly ribosomal protein K07574 yhbY; RNA-binding protein
C PST_1025 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
C PST_2389 rmf; ribosome modulation factor-related protein K03812 rmf; ribosome modulation factor
C PST_1030 rpoX; sigma54 modulation protein K05808 hpf; ribosome hibernation promoting factor
C PST_3192 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C PST_2626 predicted metal-binding, possibly nucleic acid-binding protein K07040 yceD; DUF177 domain-containing protein
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024