+F Repair protein KO #

  DNA Repair and Recombination Proteins - Psychroflexus torquis

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D P700755_002915 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P700755_002916 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E P700755_000495 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P700755_001359 DNA-3-methyladenine glycosylase II Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E P700755_001331 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P700755_000121 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D P700755_001867 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P700755_001721 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D P700755_002915 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P700755_002916 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D P700755_002901 deoxyribodipyrimidine photo-lyase-like protein, DPRP superfamily K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E P700755_000495 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E P700755_001359 DNA-3-methyladenine glycosylase II Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E P700755_001331 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E P700755_002214 thiol-disulfide isomerase, TRX family K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E P700755_003012 formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E P700755_000121 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E P700755_001051 ExoIII family purinic/apyrimidinic (AP) endonuclease XthA-like protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E P700755_001962 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E P700755_002221 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E P700755_000124 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A E P700755_002234 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A E P700755_003901 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A E P700755_002538 excinuclease ABC helicase subunit B UvrB K03702 uvrB; excinuclease ABC subunit B E P700755_002066 excinuclease ABC subunit C UvrC K03703 uvrC; excinuclease ABC subunit C E P700755_002859 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P700755_002221 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7] E P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F P700755_002581 DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F P700755_002582 DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P700755_000990 DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F P700755_002024 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E P700755_002534 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E P700755_000496 DNA mismatch repair protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E P700755_003442 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E P700755_000450 exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E P700755_000449 exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E P700755_001668 DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P700755_003399 DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E P700755_003930 DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E P700755_001888 DNA polymerase III delta prime subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E P700755_000551 DNA polymerase III epsilon subunit related exonuclease DnaQ/UvrC-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E P700755_002613 DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E P700755_003472 DNA polymerase III subunits gamma and tau DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E P700755_002859 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P700755_001056 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein E P700755_001332 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E P700755_001342 DNA repair/recombination protein RecA K03553 recA; recombination protein RecA E P700755_002174 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P700755_002169 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P700755_000862 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E P700755_000416 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E P700755_001729 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P700755_003588 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P700755_001730 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E P700755_003589 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E P700755_001342 DNA repair/recombination protein RecA K03553 recA; recombination protein RecA E P700755_001548 DNA repair protein Sms (RadA) K04485 radA; DNA repair protein RadA/Sms E P700755_003438 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF E P700755_000901 transcriptional regulator with an ATP-binding domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P700755_002966 ATP binding protein with AAA and HATPase domains K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P700755_003396 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P700755_002841 ATP binding protein with AAA and HATPase domains K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P700755_001962 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E P700755_001979 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E P700755_003189 recombination protein RecR K06187 recR; recombination protein RecR E P700755_000565 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E P700755_002174 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P700755_002169 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P700755_000862 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E P700755_000295 CRISPR-associated protein Cas1, type II K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E P700755_001729 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P700755_003588 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P700755_001730 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E P700755_003589 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F P700755_003652 DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P700755_002627 DNA gyrase subunit B GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F P700755_000975 DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F P700755_001330 DNA-binding histone-like protein HU/HimA-like protein K03530 hupB; DNA-binding protein HU-beta F P700755_003703 DNA-binding histone-like protein HU/HimA-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F P700755_001962 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F P700755_001979 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F P700755_003189 recombination protein RecR K06187 recR; recombination protein RecR F P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F P700755_000474 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F P700755_003705 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F P700755_002599 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F P700755_000124 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A F P700755_002234 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A F P700755_003901 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A F P700755_002538 excinuclease ABC helicase subunit B UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D P700755_002279 DNA polymerase IV DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D P700755_003712 lesion bypass DNA polymerase V UmuC K03502 umuC; DNA polymerase V D P700755_003711 lesion bypass DNA polymerase V UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D P700755_001342 DNA repair/recombination protein RecA K03553 recA; recombination protein RecA D P700755_000565 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D P700755_001056 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D P700755_001332 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein D P700755_001328 recombination regulator RecX/OraA-like protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D P700755_002097 DEXH box helicase, DNA ligase-associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D P700755_001867 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D P700755_001721 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P700755_002044 ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P700755_002043 ribonucleotide reductase of class Ia (aerobic), beta subunit NrdF K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D P700755_000538 3'-to-5' oligoribonuclease A, putative K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024