+F Repair protein KO
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DNA Repair and Recombination Proteins - Psychroflexus torquis
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D P700755_002915 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P700755_002916 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E P700755_000495 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E P700755_001359 DNA-3-methyladenine glycosylase II Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E P700755_001331 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E P700755_000121 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D P700755_001867 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D P700755_001721 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D P700755_002915 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P700755_002916 deoxyribodipyrimidine photolyase PhrB-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D P700755_002901 deoxyribodipyrimidine photo-lyase-like protein, DPRP superfamily K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E P700755_000495 uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E P700755_001359 DNA-3-methyladenine glycosylase II Mpg K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E P700755_001331 A/G-specific adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E P700755_002214 thiol-disulfide isomerase, TRX family K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E P700755_003012 formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E P700755_000121 endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E P700755_001051 ExoIII family purinic/apyrimidinic (AP) endonuclease XthA-like protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E P700755_001962 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E P700755_002221 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E P700755_000124 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
E P700755_002234 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
E P700755_003901 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
E P700755_002538 excinuclease ABC helicase subunit B UvrB K03702 uvrB; excinuclease ABC subunit B
E P700755_002066 excinuclease ABC subunit C UvrC K03703 uvrC; excinuclease ABC subunit C
E P700755_002859 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E P700755_002221 DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
E P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F P700755_002581 DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F P700755_002582 DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F P700755_000990 DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F P700755_002024 transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E P700755_002534 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E P700755_000496 DNA mismatch repair protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E P700755_003442 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E P700755_000450 exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E P700755_000449 exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E P700755_001668 DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E P700755_003399 DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E P700755_003930 DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E P700755_001888 DNA polymerase III delta prime subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E P700755_000551 DNA polymerase III epsilon subunit related exonuclease DnaQ/UvrC-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E P700755_002613 DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E P700755_003472 DNA polymerase III subunits gamma and tau DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E P700755_002859 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E P700755_001056 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
E P700755_001332 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E P700755_001342 DNA repair/recombination protein RecA K03553 recA; recombination protein RecA
E P700755_002174 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E P700755_002169 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E P700755_000862 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E P700755_000416 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E P700755_001729 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E P700755_003588 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E P700755_001730 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E P700755_003589 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E P700755_001342 DNA repair/recombination protein RecA K03553 recA; recombination protein RecA
E P700755_001548 DNA repair protein Sms (RadA) K04485 radA; DNA repair protein RadA/Sms
E P700755_003438 DNA recombination and repair protein RecF K03629 recF; DNA replication and repair protein RecF
E P700755_000901 transcriptional regulator with an ATP-binding domain K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E P700755_002966 ATP binding protein with AAA and HATPase domains K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E P700755_003396 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E P700755_002841 ATP binding protein with AAA and HATPase domains K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E P700755_001962 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E P700755_001979 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E P700755_003189 recombination protein RecR K06187 recR; recombination protein RecR
E P700755_000565 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E P700755_002174 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E P700755_002169 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E P700755_000862 Holliday junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E P700755_000295 CRISPR-associated protein Cas1, type II K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E P700755_001729 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E P700755_003588 exonuclease complex subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E P700755_001730 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E P700755_003589 exonuclease complex subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F P700755_003652 DNA gyrase subunit A GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F P700755_002627 DNA gyrase subunit B GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F P700755_000975 DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F P700755_001330 DNA-binding histone-like protein HU/HimA-like protein K03530 hupB; DNA-binding protein HU-beta
F P700755_003703 DNA-binding histone-like protein HU/HimA-like protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F P700755_001962 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F P700755_001979 DNA recombination and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F P700755_003189 recombination protein RecR K06187 recR; recombination protein RecR
F P700755_000576 DNA ligase Lig K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F P700755_000474 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F P700755_003705 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F P700755_002599 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F P700755_000124 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
F P700755_002234 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
F P700755_003901 excinuclease ABC subunit A UvrA K03701 uvrA; excinuclease ABC subunit A
F P700755_002538 excinuclease ABC helicase subunit B UvrB K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D P700755_002279 DNA polymerase IV DinP K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D P700755_003712 lesion bypass DNA polymerase V UmuC K03502 umuC; DNA polymerase V
D P700755_003711 lesion bypass DNA polymerase V UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D P700755_001342 DNA repair/recombination protein RecA K03553 recA; recombination protein RecA
D P700755_000565 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D P700755_001056 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D P700755_001332 single-stranded DNA-binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D P700755_001328 recombination regulator RecX/OraA-like protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D P700755_002097 DEXH box helicase, DNA ligase-associated K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D P700755_001867 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D P700755_001721 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D P700755_002044 ribonucleotide reductase of class Ia (aerobic), alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D P700755_002043 ribonucleotide reductase of class Ia (aerobic), beta subunit NrdF K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D P700755_000538 3'-to-5' oligoribonuclease A, putative K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024