+F Repair protein KO #

  DNA Repair and Recombination Proteins - Plasmodium vivax

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PVX_080560 deoxyribodipyrimidine photolyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PVX_085700 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PVX_117110 DNA-3-methyladenine glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PVX_092090 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PVX_113875 endonuclease III homologue, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PVX_082560 apurinic/apyrimidinic endonuclease Apn1, putative K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2] D Long Patch-BER factors E DNA polymerase delta complex F PVX_001720 DNA polymerase delta catalytic subunit, putative K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] F PVX_119520 DNA polymerase delta small subunit, putative K02328 POLD2; DNA polymerase delta subunit 2 E DNA polymerase epsilon complex F PVX_114615 DNA polymerase epsilon, catalytic subunit a, putative K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7] F PVX_100665 hypothetical protein, conserved K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] F PVX_201290 DNA polymerase epsilon subunit B, truncated, putative K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] F PVX_206290 DNA polymerase epsilon subunit B, putative K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] F PVX_208290 DNA polymerase epsilon subunit B, putative K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] F PVX_200290 DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7] E PVX_115055 proliferating cell nuclear antigen, putative K04802 PCNA; proliferating cell nuclear antigen E PVX_123960 proliferating cell nuclear antigen, putative K04802 PCNA; proliferating cell nuclear antigen E PVX_000820 flap exonuclease, putative K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] E PVX_122045 DNA ligase 1 precursor, putative K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D Short Patch-BER factors D Other BER factors E PVX_115115 bifunctional polynucleotide phosphatase/kinase, putative K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex F PVX_094805 DNA repair protein RAD23, putative K10839 RAD23; UV excision repair protein RAD23 E Cul4-DDB2 complex F PVX_095280 RING-box protein HRT1, putative K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E NER4 complex F PVX_101435 DNA repair protein rhp16, putative K15083 RAD16; DNA repair protein RAD16 D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex F PVX_095320 DNA-directed RNA polymerase II largest subunit, putative K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] F PVX_002755 DNA-directed RNA polymerase II 135 kDa polypeptide, putative K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] F PVX_099560 DNA-directed RNA polymerase II, putative K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 F PVX_003705 DNA-directed RNA polymerase II 16 kDa subunit, putative K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 F PVX_115200 DNA-directed RNA polymerase II 23 kDa polypeptide, putative K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 F PVX_119290 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 F PVX_111350 DNA-directed RNA polymerase II, putative K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 F PVX_123375 RNA polymerase subunit 8c, putative K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 F PVX_136260 DNA-directed RNA polymerase 2 subunit, truncated K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 F PVX_087935 DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 F PVX_122080 DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 E Cul4-CSA complex F PVX_095280 RING-box protein HRT1, putative K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] E Other TCR factor F PVX_099155 hypothetical protein, conserved K25829 ELOF1; transcription elongation factor 1 D TFIIH complex E PVX_110880 DNA repair helicase, putative K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] E PVX_087010 DNA excision-repair helicase, putative K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] E PVX_122565 transcription factor, putative K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 E PVX_114665 hypothetical protein, conserved K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 E PVX_101110 hypothetical protein, conserved K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 E PVX_118395 REX1 DNA repair protein, putative K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit E PVX_094935 cyclin dependent kinase 7 (cdk7), putative K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] E PVX_117280 cyclin homologue, putative K06634 CCNH; cyclin H E PVX_080625 CDK-activating kinase assembly factor, putative K10842 MNAT1; CDK-activating kinase assembly factor MAT1 D RPA (replication factor A) E PVX_000765 replication factor a protein, putative K07466 RFA1; replication factor A1 E PVX_118385 hypothetical protein, conserved K10740 RPA3; replication factor A3 D Other NER factors E PVX_088055 DNA repair protein, putative K10847 XPA; DNA-repair protein complementing XP-A cells E PVX_003600 ERCC1 nucleotide excision repair protein, putative K10849 ERCC1; DNA excision repair protein ERCC-1 E PVX_115400 DNA repair endonuclease, putative K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] E PVX_003735 DNA repair endonuclease, putative K10846 ERCC5; DNA excision repair protein ERCC-5 E PVX_122045 DNA ligase 1 precursor, putative K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PVX_087875 DNA mismatch repair enzyme, putative K08735 MSH2; DNA mismatch repair protein MSH2 E PVX_085160 DNA mismatch repair enzyme, putative K08735 MSH2; DNA mismatch repair protein MSH2 E PVX_097835 DNA repair protein, putative K08737 MSH6; DNA mismatch repair protein MSH6 D MutL homologs E PVX_091525 DNA mismatch repair enzyme, putative K08734 MLH1; DNA mismatch repair protein MLH1 E PVX_081620 DNA mismatch repair protein PMS2, putative K10858 PMS2; DNA mismatch repair protein PMS2 D DNA polymerase delta complex E PVX_001720 DNA polymerase delta catalytic subunit, putative K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] E PVX_119520 DNA polymerase delta small subunit, putative K02328 POLD2; DNA polymerase delta subunit 2 D RPA (replication factor A) E PVX_000765 replication factor a protein, putative K07466 RFA1; replication factor A1 E PVX_118385 hypothetical protein, conserved K10740 RPA3; replication factor A3 D RFC (replication factor C) E PVX_002575 replication factor C subunit 1, putative K10754 RFC1; replication factor C subunit 1 E PVX_002640 replication factor C subunit 2, putative K10755 RFC2_4; replication factor C subunit 2/4 E PVX_100985 replication factor C subunit 4, putative K10755 RFC2_4; replication factor C subunit 2/4 E PVX_117300 replication factor C3, putative K10756 RFC3_5; replication factor C subunit 3/5 E PVX_091205 replication factor C subunit 5, putative K10756 RFC3_5; replication factor C subunit 3/5 D Other MMR factors E PVX_115055 proliferating cell nuclear antigen, putative K04802 PCNA; proliferating cell nuclear antigen E PVX_123960 proliferating cell nuclear antigen, putative K04802 PCNA; proliferating cell nuclear antigen E PVX_096090 hypothetical protein, conserved K10746 EXO1; exonuclease 1 [EC:3.1.-.-] E PVX_122045 DNA ligase 1 precursor, putative K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex E PVX_081385 DNA repair exonuclease, putative K10865 MRE11; double-strand break repair protein MRE11 D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex E PVX_081385 DNA repair exonuclease, putative K10865 MRE11; double-strand break repair protein MRE11 D BRCA complex E PVX_091045 DNA repair protein RAD51, putative K04482 RAD51; DNA repair protein RAD51 D RecA family proteins E PVX_091045 DNA repair protein RAD51, putative K04482 RAD51; DNA repair protein RAD51 D Rad52 family proteins D Rad54 family proteins E PVX_093575 DNA repair protein rhp54, putative K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] D RecQ family DNA helicases D Bloom's syndrome complex (BTR) E PVX_083255 DNA topoisomerase III alpha, putative K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D RPA (replication factor A) E PVX_000765 replication factor a protein, putative K07466 RFA1; replication factor A1 E PVX_118385 hypothetical protein, conserved K10740 RPA3; replication factor A3 D Protein phosphatase 4 E PVX_099825 serine/threonine protein phosphatase, putative K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] D AP-5 complex E PVX_094610 hypothetical protein K19024 AP5S1; AP-5 complex subunit sigma-1 D SMC5-SMC6 complex E PVX_091805 SMC family, C-terminal domain containing protein K22803 SMC5; structural maintenance of chromosomes protein 5 E PVX_079985 hypothetical protein, conserved K22804 SMC6; structural maintenance of chromosomes protein 6 E PVX_115375 hypothetical protein, conserved K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27] E PVX_117915 hypothetical protein, conserved K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-] D Other HR factors E PVX_096255 hypothetical protein, conserved K10881 SHFM1; 26 proteasome complex subunit DSS1 E PVX_100900 HD domain containing protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-] E PVX_000850 AAA family ATPase, putative K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-] E PVX_094690 hypothetical protein, conserved K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex E PVX_081385 DNA repair exonuclease, putative K10865 MRE11; double-strand break repair protein MRE11 D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) E PVX_083255 DNA topoisomerase III alpha, putative K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1] D FANCD2-I complex D Downstream FA components D Other FA pathway factors E PVX_091045 DNA repair protein RAD51, putative K04482 RAD51; DNA repair protein RAD51 C Other DSBR factors D Protein phosphatase 6 E PVX_119815 serine/threonine protein phosphatase, putative K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16] D Ubiquitin ligases D Others E PVX_117105 hypothetical protein, conserved K23314 WRAP53; telomerase Cajal body protein 1 E PVX_111050 WD domain, G-beta repeat domain containing protein K24752 WDR70; WD repeat-containing protein 70 B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group D PVX_123140 ubiquitin-conjugating enzyme E2, putative K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] D PVX_095270 ubiquitin-conjugating enzyme E2, putative K10574 UBE2B; ubiquitin-conjugating enzyme E2 B [EC:2.3.2.23] D PVX_083065 hypothetical protein, conserved K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-] D PVX_119410 ubiquitin-conjugating enzyme E2, putative K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant D PVX_079885 ubiquitin-conjugating enzyme E2, putative K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] C Other TLS factors D PVX_115055 proliferating cell nuclear antigen, putative K04802 PCNA; proliferating cell nuclear antigen D PVX_123960 proliferating cell nuclear antigen, putative K04802 PCNA; proliferating cell nuclear antigen B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex D PVX_002640 replication factor C subunit 2, putative K10755 RFC2_4; replication factor C subunit 2/4 D PVX_100985 replication factor C subunit 4, putative K10755 RFC2_4; replication factor C subunit 2/4 D PVX_117300 replication factor C3, putative K10756 RFC3_5; replication factor C subunit 3/5 D PVX_091205 replication factor C subunit 5, putative K10756 RFC3_5; replication factor C subunit 3/5 C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex D PVX_118565 hypothetical protein, conserved K23387 GET4; golgi to ER traffic protein 4 C Other check point factors D PVX_115063 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon D PVX_089505 suppressor of Ras1 3-9, putative K06630 YWHAE; 14-3-3 protein epsilon D PVX_117590 ATPase, putative K12196 VPS4; vacuolar protein-sorting-associated protein 4 B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D PVX_117530 hypothetical protein, conserved K17815 EXO5; exonuclease V [EC:3.1.-.-] C Helicases C PSO4 complex D PVX_119545 WD domain, G-beta repeat domain containing protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27] D PVX_111045 DNA binding protein Myb2, putative K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1 D PVX_113855 hypothetical protein, conserved K12861 BCAS2; pre-mRNA-splicing factor SPF27 D PVX_119245 splicing regulatory protein, putative K12862 PLRG1; pleiotropic regulator 1 C Modulation of nucleotide pools D PVX_091970 deoxyuridine 5'-triphosphate nucleotidohydrolase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PVX_084685 ribonucleoside-diphosphate reductase large chain, putative K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] D PVX_095010 ribonucleotide reductase small subunit, putative K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] D PVX_086155 ribonucleoside-diphosphate reductase small chain, putative K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PVX_080560 deoxyribodipyrimidine photolyase, putative K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PVX_085700 uracil-DNA glycosylase, putative K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PVX_117110 DNA-3-methyladenine glycosylase, putative K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E PVX_092090 A/G-specific adenine glycosylase, putative K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PVX_113875 endonuclease III homologue, putative K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D RecJ D DNA ligase D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E PVX_080535 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PVX_116845 DNA-directed RNA polymerase, alpha subunit, putative K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PVX_122210 hypothetical protein, conserved K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme D DNA ligase D Other MMR factors E PVX_080535 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PVX_098000 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins D RecFOR pathway proteins D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PVX_123795 DNA GyrAse a-subunit, putative K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PVX_100925 DNA gyrase subunit b, putative K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway E Facilitator E Supressor B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D PVX_098000 single-strand binding protein, putative K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D PVX_091970 deoxyuridine 5'-triphosphate nucleotidohydrolase, putative K01520 dut; dUTP diphosphatase [EC:3.6.1.23] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024