+D GENES KO #

  KEGG Orthology (KO) - Methanocella arvoryzae

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:rci00010] D RCIX333 gpi; putative glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RCIX1358 pfp; PPi-dependent 6-phosphofructokinase (PFK-A family) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RCIX768 fbaB-1; fructose-bisphosphate aldolase (class I) K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D RCIX1359 fbaA; fructose-bisphosphate aldolase (class II) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RRC153 aroF; putative 2-dehydro-3-deoxy-phosphoheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RCIX770 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D RCIX551 gap; glyceraldehyde-3-phosphate dehydrogenase K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D RCIX1778 pgk-1; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RRC531 pgk-2; 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RCIX2675 predicted phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX2144 gpmA-2; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX838 gpmA-1; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D LRC402 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D LRC283 pyk; pyruvate kinase (pyruvate phosphotransferase) K00873 PK; pyruvate kinase [EC:2.7.1.40] D RCIX1540 ppsA-2; phosphoenolpyruvate synthetase (PEP synthase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RRC128 pdhA; pyruvate dehydrogenase complex E1, transketolase alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRC126 pdhB; pyruvate dehydrogenase complex E1, transketolase beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRC124 pdhC; pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RCIX1692 acs-1; acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RRC211 acs-2; putative acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RCIX1774 acdA; acetyl-coa synthetase (ADP-forming), alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RCIX1773 acdB; acetyl-coa synthetase (ADP-forming), beta subunit K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D RCIX831 acdAB; acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] C 00020 Citrate cycle (TCA cycle) [PATH:rci00020] D RCIX1793 leuA-3; 2-isopropylmalate synthase K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3] D RCIX1801 icd; isocitrate dehydrogenase K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX2057 fumA; fumarate hydratase (fumarase), alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RCIX2056 fumB; fumarate hydratase (fumarase), beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RCIX750 pycA; putative pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D RCIX749 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D RRC128 pdhA; pyruvate dehydrogenase complex E1, transketolase alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRC126 pdhB; pyruvate dehydrogenase complex E1, transketolase beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRC124 pdhC; pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00030 Pentose phosphate pathway [PATH:rci00030] D RCIX333 gpi; putative glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D RCIX2363 gnd; putative 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D RCIX1835 rpi; ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D RCIX775 fae-hps; formaldehyde activating hexulose-6-phosphate synthase K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43] D RRC413 putative hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D RCIX1492 conserved hypothetical protein (orotidine 5\'-phosphate decarboxylase domain/dimethylmenaquinone methyltransferase domain) K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D RCIX563 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D RCIX2237 pfkB-1; putative ATP-dependent phosphofructokinase (PFK-B family) K00852 rbsK; ribokinase [EC:2.7.1.15] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RRC408 eif2b2; translation initiation factor 2B, subunit 2 K18237 K18237; ribose 1,5-bisphosphate isomerase [EC:5.3.1.29] D RCIX1327 prsA-1; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RCIX2406 prsA-2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RCIX1128 dhg; putative glucose 1-dehydrogenase (Zn-containing alcohol dehydrogenase superfamily) K22969 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D RCIX2090 aor-1; tungsten-containing aldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D RRC230 aor-2; putative tungsten-containing aldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D RCIX2676 ttuD; putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D RCIX768 fbaB-1; fructose-bisphosphate aldolase (class I) K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D RCIX1359 fbaA; fructose-bisphosphate aldolase (class II) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RRC153 aroF; putative 2-dehydro-3-deoxy-phosphoheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RCIX1358 pfp; PPi-dependent 6-phosphofructokinase (PFK-A family) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:rci00040] D RCIX2404 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RCIX919 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:rci00051] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RCIX300 rfbM; mannose-1-phosphate guanylyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RCIX362 nucleotidyltransferase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RCIX204 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D RCIX919 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RCIX1358 pfp; PPi-dependent 6-phosphofructokinase (PFK-A family) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RCIX768 fbaB-1; fructose-bisphosphate aldolase (class I) K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D RCIX1359 fbaA; fructose-bisphosphate aldolase (class II) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RRC153 aroF; putative 2-dehydro-3-deoxy-phosphoheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RCIX770 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 00052 Galactose metabolism [PATH:rci00052] D RCIX1322 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D RCIX1448 galE-2; putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LRC285 rfbB-3; dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RCIX1358 pfp; PPi-dependent 6-phosphofructokinase (PFK-A family) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00053 Ascorbate and aldarate metabolism D RCIX2404 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] C 00500 Starch and sucrose metabolism [PATH:rci00500] D LRC258 bglX; putative thermostable beta-glucosidase (glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RCIX1328 putative glycosyltransferase (group 1) K16150 K16150; glycogen synthase [EC:2.4.1.11] D RCIX1324 putative glycosyltransferase (group 1) K16150 K16150; glycogen synthase [EC:2.4.1.11] D RCIX1323 amyA; putative alpha-amylase K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RCIX333 gpi; putative glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rci00520] D RCIX1436 glmS; glutamine-fructose-6-phosphate amidotransferase,isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RCIX1437 pgm-1; phosphoglucomutase/phosphomannomutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D RCIX1438 rfbA-4; glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RCIX1961 NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D RCIX1930 wecB; UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RCIX2404 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D RCIX1322 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D RCIX1448 galE-2; putative UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D LRC285 rfbB-3; dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D RCIX333 gpi; putative glucose-6-phosphate isomerase K06859 pgi1; glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] D RCIX300 rfbM; mannose-1-phosphate guanylyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RCIX362 nucleotidyltransferase family protein K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D RCIX204 gmd; GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D RCIX1921 aminotransferase (DegT family) K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:rci00620] D RCIX1692 acs-1; acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RRC211 acs-2; putative acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC128 pdhA; pyruvate dehydrogenase complex E1, transketolase alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRC126 pdhB; pyruvate dehydrogenase complex E1, transketolase beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRC124 pdhC; pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D LRC283 pyk; pyruvate kinase (pyruvate phosphotransferase) K00873 PK; pyruvate kinase [EC:2.7.1.40] D RCIX552 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RCIX1774 acdA; acetyl-coa synthetase (ADP-forming), alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RCIX1773 acdB; acetyl-coa synthetase (ADP-forming), beta subunit K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D RCIX831 acdAB; acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RCIX2738 putative metallo-beta-lactamase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RCIX100 conserved hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RCIX44 conserved hypothetical protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D RCIX1757 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D RCIX750 pycA; putative pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D RCIX749 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D RCIX2057 fumA; fumarate hydratase (fumarase), alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RCIX2056 fumB; fumarate hydratase (fumarase), beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RCIX1540 ppsA-2; phosphoenolpyruvate synthetase (PEP synthase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RCIX673 leuA-2; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D RCIX2647 leuA-4; 2-isopropylmalate synthase K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rci00630] D RCIX1692 acs-1; acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RRC211 acs-2; putative acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RCIX1754 glcD-1; (S)-2-hydroxy-acid dehydrogenase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D RCIX2225 glcD-2; putative (S)-2-hydroxy-acid dehydrogenase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D RCIX619 katE; monofunctional large subunit heme catalase (type I, clade II) K03781 katE; catalase [EC:1.11.1.6] D RCIX2610 putative hydrolase (HAD superfamily) K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D RCIX953 gph; phosphoglycolate phosphatase K22223 pgp; phosphoglycolate phosphatase [EC:3.1.3.18] D RCIX222 rbcL; ribulose 1,5-bisphosphate carboxylase (RuBisCO),large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] D RCIX942 glnA-2; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX649 glnA-1; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX1736 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX2676 ttuD; putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D RCIX993 leuB-1; 3-isopropylmalate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] C 00640 Propanoate metabolism [PATH:rci00640] D RCIX1692 acs-1; acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RRC211 acs-2; putative acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RCIX1774 acdA; acetyl-coa synthetase (ADP-forming), alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RCIX1773 acdB; acetyl-coa synthetase (ADP-forming), beta subunit K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D RCIX831 acdAB; acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00650 Butanoate metabolism [PATH:rci00650] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RCIX993 leuB-1; 3-isopropylmalate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RCIX149 conserved hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D LRC534 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRC533 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RCIX2494 alsD; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] C 00660 C5-Branched dibasic acid metabolism [PATH:rci00660] D LRC534 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRC533 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D RCIX2494 alsD; alpha-acetolactate decarboxylase K01575 alsD; acetolactate decarboxylase [EC:4.1.1.5] D LRC535 leuA-1; 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21] D RCIX990 leuC-1; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RRC265 leuC-3; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RRC266 leuD-3; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RCIX991 leuD-1; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] C 00562 Inositol phosphate metabolism [PATH:rci00562] D RRC40 suhB; archaeal specific fructose-1,6-bisphosphatase/inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RCIX770 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:rci00190] D RCIX481 putative hydrogenase membrane component (EchB-like) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D RCIX2030 atpA; A(1)A(0)-type ATP synthase, subunit A K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D RCIX2032 atpB; A(1)A(0)-type ATP synthase, subunit B K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D RCIX2028 atpC; A(1)A(0)-type ATP synthase, subunit C K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D RCIX2034 atpD; A(1)A(0)-type ATP synthase, subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D RCIX2027 atpE; A(1)A(0)-type ATP synthase, subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D RCIX2029 atpF; A(1)A(0)-type ATP synthase, subunit F K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D RCIX2024 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D RCIX2025 atpI; A(1)A(0)-type ATP synthase, subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D RCIX2026 atpK; A(1)A(0)-type ATP synthase, subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes [PATH:rci00720] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RCIX1540 ppsA-2; phosphoenolpyruvate synthetase (PEP synthase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RCIX750 pycA; putative pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1] D RCIX749 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1] D RCIX2057 fumA; fumarate hydratase (fumarase), alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D RCIX2056 fumB; fumarate hydratase (fumarase), beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D RCIX1755 Fe-S cluster-binding oxidoreductase component (HdrD-like) K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1] D LRC216 predicted fumarate reductase/succinate dehydrogenase Fe-S cluster-binding component (HdrD-like) K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1] D LRC333 predicted Fe-S cluster-binding oxidoreductase K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1] D RCIX780 predicted Fe-S cluster-binding oxidoreductase K18210 tfrB; fumarate reductase (CoM/CoB) subunit B [EC:1.3.4.1] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRC463 cdhE; carbon monoxide dehydrogenase/acetyl-CoA synthase complex, corrinoid large subunit K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245] D LRC461 cdhD; carbon monoxide dehydrogenase/acetyl-CoA synthase complex, corrinoid small subunit K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245] D RCIX1692 acs-1; acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RRC211 acs-2; putative acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] C 00680 Methane metabolism [PATH:rci00680] D RCIX2285 fdh; NAD-dependent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] D RRC251 fdhA-4; formate dehydrogenase, alpha subunit K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D RCIX2378 fdhA-3; formate dehydrogenase, alpha subunit K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D RCIX2373 fdhA-2; formate dehydrogenase, alpha subunit K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D RCIX1628 fdhA-1; formate dehydrogenase, alpha subunit K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6] D RCIX2376 fdhB-3; formate dehydrogenase, beta subunit K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D RRC252 fdhB-4; formate dehydrogenase, beta subunit K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D RCIX2372 fdhB-2; formate dehydrogenase, beta subunit K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D RCIX1630 fdhB-1; formate dehydrogenase, beta subunit K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D LRC456 cdhA; carbon monoxide dehydrogenase/acetyl-CoA synthase complex, alpha subunit K00192 cdhA; anaerobic carbon-monoxide dehydrogenase, CODH/ACS complex subunit alpha [EC:1.2.7.4] D LRC458 cdhB; carbon monoxide dehydrogenase/acetyl-CoA synthase complex, epsilon subunit K00195 cdhB; anaerobic carbon-monoxide dehydrogenase, CODH/ACS complex subunit epsilon D LRC459 cdhC; carbon monoxide dehydrogenase/acetyl-CoA synthase complex, beta subunit K00193 cdhC; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit beta [EC:2.3.1.169] D LRC463 cdhE; carbon monoxide dehydrogenase/acetyl-CoA synthase complex, corrinoid large subunit K00197 cdhE; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit gamma [EC:2.1.1.245] D LRC461 cdhD; carbon monoxide dehydrogenase/acetyl-CoA synthase complex, corrinoid small subunit K00194 cdhD; acetyl-CoA decarbonylase/synthase, CODH/ACS complex subunit delta [EC:2.1.1.245] D RCIX1736 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RCIX2676 ttuD; putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D LRC402 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RCIX768 fbaB-1; fructose-bisphosphate aldolase (class I) K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D RCIX1359 fbaA; fructose-bisphosphate aldolase (class II) K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D RRC153 aroF; putative 2-dehydro-3-deoxy-phosphoheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RCIX1358 pfp; PPi-dependent 6-phosphofructokinase (PFK-A family) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D RRC413 putative hexulose-6-phosphate isomerase K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D RCIX775 fae-hps; formaldehyde activating hexulose-6-phosphate synthase K13812 fae-hps; bifunctional enzyme Fae/Hps [EC:4.2.1.147 4.1.2.43] D RCIX1492 conserved hypothetical protein (orotidine 5\'-phosphate decarboxylase domain/dimethylmenaquinone methyltransferase domain) K13831 hps-phi; 3-hexulose-6-phosphate synthase / 6-phospho-3-hexuloisomerase [EC:4.1.2.43 5.3.1.27] D RRC262 fwdA-2; tungsten formylmethanofuran dehydrogenase,subunit A K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12] D RCIX600 fwdA-1; tungsten formylmethanofuran dehydrogenase,subunit A K00200 fwdA; formylmethanofuran dehydrogenase subunit A [EC:1.2.7.12] D RCIX599 fwdB-1; tungsten formylmethanofuran dehydrogenase,subunit B K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12] D RRC261 fwdB-2; tungsten formylmethanofuran dehydrogenase,subunit B K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12] D RCIX1641 fmdB; predicted molybdenum formylmethanofuran dehydrogenase, subunit B K00201 fwdB; formylmethanofuran dehydrogenase subunit B [EC:1.2.7.12] D RCIX601 fwdC-1; tungsten formylmethanofuran dehydrogenase,subunit C K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12] D RRC263 fwdC-2; tungsten formylmethanofuran dehydrogenase,subunit C K00202 fwdC; formylmethanofuran dehydrogenase subunit C [EC:1.2.7.12] D RRC260 fwdD-2; tungsten formylmethanofuran dehydrogenase,subunit D K00203 fwdD; formylmethanofuran dehydrogenase subunit D [EC:1.2.7.12] D RCIX1642 fmdD; molybdenum formylmethanofuran dehydrogenase,subunit D K00203 fwdD; formylmethanofuran dehydrogenase subunit D [EC:1.2.7.12] D RCIX598 fwdD-1; tungsten formylmethanofuran dehydrogenase,subunit D K00203 fwdD; formylmethanofuran dehydrogenase subunit D [EC:1.2.7.12] D RRC254 fwdF-2; tungsten formylmethanofuran dehydrogenase,subunit F K00205 fwdF; 4Fe-4S ferredoxin D RCIX592 fwdF-1; tungsten formylmethanofuran dehydrogenase,subunit F K00205 fwdF; 4Fe-4S ferredoxin D RRC253 fwdG-2; tungsten formylmethanofuran dehydrogenase,subunit G K11260 fwdG; 4Fe-4S ferredoxin D RCIA24 fwdG-1; tungsten formylmethanofuran dehydrogenase,subunit G K11260 fwdG; 4Fe-4S ferredoxin D RCIX1639 fmdE; putative molybdenum formylmethanofuran dehydrogenase, subunit E K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12] D RCIX1392 fwdE; tungsten formylmethanofuran dehydrogenase,subunit E K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12] D RCIX1003 hypothetical protein similar to formylmethanofuran dehydrogenase, subunit E K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12] D LRC202 ftr; formylmethanofuran--tetrahydromethanopterin formyltransferase K00672 ftr; formylmethanofuran--tetrahydromethanopterin N-formyltransferase [EC:2.3.1.101] D LRC191 mch-1; N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] D RCIX2742 mch-2; N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase K01499 mch; methenyltetrahydromethanopterin cyclohydrolase [EC:3.5.4.27] D RCIX2230 mtd; coenzyme F420-dependent N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase K00319 mtd; methylenetetrahydromethanopterin dehydrogenase [EC:1.5.98.1] D RCIX2138 frhA-2; coenzyme F420-reducing hydrogenase, alpha subunit K00440 frhA; coenzyme F420 hydrogenase subunit alpha [EC:1.12.98.1] D RCIX2388 frhA-1; coenzyme F420-reducing hydrogenase, alpha subunit K00440 frhA; coenzyme F420 hydrogenase subunit alpha [EC:1.12.98.1] D RCIX2759 frhB-4; coenzyme F420-reducing hydrogenase, beta subunit K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D RCIX2391 frhB-1; coenzyme F420-reducing hydrogenase, beta subunit K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D RCIX2136 frhB-2; coenzyme F420-reducing hydrogenase, beta subunit K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D RCIX1471 frhB-3; putative coenzyme F420 hydrogenase, beta subunit K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1] D RCIA172 frhD-1; coenzyme F420-reducing hydrogenase, delta subunit (maturation peptidase) K00442 frhD; coenzyme F420 hydrogenase subunit delta D RCIX2137 frhG-2; coenzyme F420-reducing hydrogenase, gamma subunit K00443 frhG; coenzyme F420 hydrogenase subunit gamma [EC:1.12.98.1] D RCIX2390 frhG-1; coenzyme F420-reducing hydrogenase, gamma subunit K00443 frhG; coenzyme F420 hydrogenase subunit gamma [EC:1.12.98.1] D RCIX1876 fae; putative formaldehyde-activating enzyme K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147] D RCIX564 mer; N(5),N(10)-methylenetetrahydromethanopterin reductase K00320 mer; 5,10-methylenetetrahydromethanopterin reductase [EC:1.5.98.2] D RCIX2068 mtrA-1; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit A K00577 mtrA; tetrahydromethanopterin S-methyltransferase subunit A [EC:7.2.1.4] D RCIX2069 mtrA-2; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit A K00577 mtrA; tetrahydromethanopterin S-methyltransferase subunit A [EC:7.2.1.4] D RCIX2067 mtrB; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit B K00578 mtrB; tetrahydromethanopterin S-methyltransferase subunit B [EC:7.2.1.4] D RCIX2066 mtrC; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit C K00579 mtrC; tetrahydromethanopterin S-methyltransferase subunit C [EC:7.2.1.4] D RCIX2065 mtrD; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit D K00580 mtrD; tetrahydromethanopterin S-methyltransferase subunit D [EC:7.2.1.4] D RCIX2064 mtrE; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit E K00581 mtrE; tetrahydromethanopterin S-methyltransferase subunit E [EC:7.2.1.4] D RCIX2070 mtrG; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit G K00583 mtrG; tetrahydromethanopterin S-methyltransferase subunit G [EC:7.2.1.4] D RCIX2071 mtrH; N(5)-methyltetrahydromethanopterin-coenzyme M methyltransferase, subunit H K00584 mtrH; tetrahydromethanopterin S-methyltransferase subunit H [EC:7.2.1.4] D RCIX2063 mcrA; methyl-coenzyme M reductase, alpha subunit K00399 mcrA; methyl-coenzyme M reductase alpha subunit [EC:2.8.4.1] D LRC527 ABC-type transport system, ATPase component K00400 K00400; methyl coenzyme M reductase system, component A2 D LRC166 ABC-type transport system, ATPase component K00400 K00400; methyl coenzyme M reductase system, component A2 D RCIX2059 mcrB; methyl-coenzyme M reductase, beta subunit K00401 mcrB; methyl-coenzyme M reductase beta subunit [EC:2.8.4.1] D RCIX2062 mcrG; methyl-coenzyme M reductase, gamma subunit K00402 mcrG; methyl-coenzyme M reductase gamma subunit [EC:2.8.4.1] D RCIX2061 mcrC; methyl-coenzyme M reductase, operon protein C K03421 mcrC; methyl-coenzyme M reductase subunit C D RCIX2060 mcrD-1; methyl-coenzyme M reductase, operon protein D K03422 mcrD; methyl-coenzyme M reductase subunit D D RCIX962 mcrD-2; methyl-coenzyme M reductase operon protein D K03422 mcrD; methyl-coenzyme M reductase subunit D D LRC437 hdrA-1; putative heterodisulfide reductase, subunit A K22480 hdrA1; heterodisulfide reductase subunit A1 [EC:1.8.7.3] D LRC438 hdrB-1; putative heterodisulfide reductase, subunit B K22481 hdrB1; heterodisulfide reductase subunit B1 [EC:1.8.7.3] D LRC439 hdrC-1; putative heterodisulfide reductase, subunit C K22482 hdrC1; heterodisulfide reductase subunit C1 [EC:1.8.7.3] D RCIX596 hdrA-2; heterodisulfide reductase, subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RRC258 hdrA-3; heterodisulfide reductase, subunit A K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RRC257 hdrB-3; heterodisulfide reductase, subunit B K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RCIX595 hdrB-2; heterodisulfide reductase, subunit B K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RRC256 hdrC-3; heterodisulfide reductase, subunit C K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RCIX594 hdrC-2; heterodisulfide reductase, subunit C K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D RCIX597 mvhD-1; coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D RRC259 mvhD-2; coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D RCIX590 mvhA-2; coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), alpha subunit K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5] D RCIX473 mvhA-1; coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), alpha subunit K14126 mvhA; F420-non-reducing hydrogenase large subunit [EC:1.12.99.- 1.8.98.5] D RCIX591 mvhG-2; coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), gamma subunit K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5] D RCIX474 mvhG-1; coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing hydrogenase), gamma subunit K14128 mvhG; F420-non-reducing hydrogenase small subunit [EC:1.12.99.- 1.8.98.5] D RCIX1692 acs-1; acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RRC211 acs-2; putative acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RCIX1540 ppsA-2; phosphoenolpyruvate synthetase (PEP synthase) K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D RCIX2675 predicted phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX2144 gpmA-2; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX838 gpmA-1; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX1538 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RCIX1735 serB-2; putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D RCIX1974 mtaB; methanol:cobalamin methyltransferase, subunit B K04480 mtaB; methanol---5-hydroxybenzimidazolylcobamide Co-methyltransferase [EC:2.1.1.90] D RCIX1973 mtaC; methanol:cobalamin methyltransferase, subunit C K14081 mtaC; methanol corrinoid protein D RCIX630 comB; putative 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] D LRC441 comD; sulfopyruvate decarboxylase, alpha chain K24393 comDE; sulfopyruvate decarboxylase [EC:4.1.1.79] D RCIX460 cofH-1; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, subunit 2 K11781 cofH; 5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase [EC:2.5.1.147] D RCIX459 cofH-2; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, subunit 2 K11781 cofH; 5-amino-6-(D-ribitylamino)uracil---L-tyrosine 4-hydroxyphenyl transferase [EC:2.5.1.147] D RCIX461 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, subunit 1 K11780 cofG; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase [EC:4.3.1.32] D RCIX464 conserved hypothetical protein K14941 cofC; 2-phospho-L-lactate/phosphoenolpyruvate guanylyltransferase [EC:2.7.7.68 2.7.7.105] D RRC453 cofD; LPPG:Fo 2-phopspho-L-lactate transferase K11212 cofD; LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] D RRC379 cofE; putative coenzyme F420-0:gamma-glutamyl ligase K12234 cofE; coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] D RCIX2647 leuA-4; 2-isopropylmalate synthase K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-] D RCIX2646 leuC-2; 3-isopropylmalate dehydratase, large subunit K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114] D RCIX2645 leuD-2; 3-isopropylmalate dehydratase, small subunit K16793 aksE; methanogen homoaconitase small subunit [EC:4.2.1.114] D RCIX2644 leuB-2; 2-isopropylmalate dehydrogenase K10978 aksF; methanogen homoisocitrate dehydrogenase [EC:1.1.1.87 1.1.1.-] D RCIX1543 mfnA; pyridoxal-dependent L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D RCIX2220 conserved hypothetical protein K06914 mfnD; tyramine---L-glutamate ligase [EC:6.3.4.24] D RCIX681 conserved hypothetical protein K09733 mfnB; (5-formylfuran-3-yl)methyl phosphate synthase [EC:4.2.3.153] D RCIX2105 putative amino acid kinase K07144 mfnE; 5-(aminomethyl)-3-furanmethanol phosphate kinase [EC:2.7.4.31] D RCIX2219 conserved hypothetical protein K07072 mfnF; (4-(4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl)furan-2-yl)methanamine synthase [EC:2.5.1.131] C 00910 Nitrogen metabolism [PATH:rci00910] D RCIX1611 nifD; nitrogenase molybdenum-iron protein, subunit alpha (dinitrogenase) K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D RCIX1613 nifK; nitrogenase molybdenum-iron protein, subunit beta (dinitrogenase) K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D RCIX1606 nifH-1; nitrogenase iron protein (nitrogenase reductase) K02588 nifH; nitrogenase iron protein NifH D RCIX1699 prismane protein (hybrid cluster protein) K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D LRC422 gdh-2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D LRC421 gdh-1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D RCIX942 glnA-2; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX649 glnA-1; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RRC282 gltD; NADPH-dependent glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D RCIX2375 cah-1; putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D RCIX2393 cah-2; putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:rci00920] D RCIX447 ssuA; putative ABC-type sulfonate import system,periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D RCIX445 ssuC; putative ABC-type sulfonate import system,permease component K15554 ssuC; sulfonate transport system permease protein D RCIX444 ssuB; putative ABC-type sulfonate import system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RRC481 sat; sulfate adenylyltransferase (sulfurylase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D RRC41 cysC; putative adenylylsulfate kinase (APS kinase) K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RCIX1979 cysH-1; putative 3\'-phosphoadenosine 5\'-phosphosulfate sulfotransferase (PAPS reductase) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D RRC23 cysH-2; putative 3\'-phosphoadenosine 5\'-phosphosulfate sulfotransferase (PAPS reductase) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D RCIX1556 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:rci00071] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:rci00561] D RCIX2676 ttuD; putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D RCIX1060 putative glycosyltransferase (group 1) K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] C 00564 Glycerophospholipid metabolism [PATH:rci00564] D LRC43 predicted glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D LRC217 predicted fumarate reductase/succinate dehydrogenase component K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D RCIX2417 glpQ; putative glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D RCIX1904 putative CDP-alcohol phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D RCIX1388 gldA; glycerol-1-phosphate dehydrogenase (NAD[P]) K00096 araM; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261] D RCIX581 conserved hypothetical protein (PcrB-like) K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D RCIX582 conserved hypothetical protein (PcrB-like) K17104 E2.5.1.41; phosphoglycerol geranylgeranyltransferase [EC:2.5.1.41] D LRC477 ubiA-1; putative 4-hydroxybenzoate octaprenyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D RCIX579 ubiA-2; putative 4-hydroxybenzoate octaprenyltransferase K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D RCIX497 putative prenyltransferase (UbiA family) K17105 E2.5.1.42; geranylgeranylglycerol-phosphate geranylgeranyltransferase [EC:2.5.1.42] D RCIX520 conserved hypothetical protein K19664 carS; CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase [EC:2.7.7.67] D RCIX2051 bchP; putative geranylgeranyl reductase K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] D RCIX2708 predicted FAD-dependent oxidoreductase K17830 GGR; digeranylgeranylglycerophospholipid reductase [EC:1.3.1.101 1.3.7.11] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:rci00230] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RCIX1327 prsA-1; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D RCIX2406 prsA-2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D LRC233 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RCIX513 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D RCIX1405 phosphoribosylglycinamide formyltransferase K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D LRC114 purQ; putative phosphoribosylformylglycinamidine synthase, glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D LRC115 purL; putative phosphoribosylformylglycinamidine synthase, synthetase domain K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3] D RCIX1823 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D RCIX236 phosphoribosylaminoimidazole carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D RCIX2420 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RCIX2374 purP; predicted 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl5\'-monophosphate synthetase K06863 purP; 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.23] D RCIX491 purO; IMP cyclohydrolase K11176 purO; IMP cyclohydrolase [EC:3.5.4.10] D RCIX1545 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RCIX2221 surE; nucleoside 5\'-monophosphate phosphohydrolase (survival protein) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RCIX683 guaB-1; inosine-5\'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D LRC143 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RCIX1099 conserved hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73] D RCIX834 nucleoside-triphosphatase (Ham1-like) K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D RCIX404 guaA-1; GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RCIX1576 guaA-2; GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RCIX705 nrdD; anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent) K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D LRC530 dgt; putative deoxyguanosinetriphosphate (dGTP) triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D LRC431 cyaB; adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D RCIX1751 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RCIX1126 deoA; putative thymidine phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D RCIX2570 adk-2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RCIX2459 adk-1; putative adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D RRC41 cysC; putative adenylylsulfate kinase (APS kinase) K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] D RRC481 sat; sulfate adenylyltransferase (sulfurylase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:rci00240] D RCIX1369 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RCIX1367 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D RCIX1029 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RCIX1028 pyrI; aspartate carbamoyltransferase, regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D RCIX288 pyrC; dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D LRC390 pyrD; dihydroorotate dehydrogenase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D LRC391 pyrK; predicted dihydroorotate dehydrogenase, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D RCIX518 pyrE-1; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D RRC356 pyrF; orotidine 5\'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D RCIX1856 pyrH; putative uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D LRC143 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RCIX1748 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D RCIX2574 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D RCIX2221 surE; nucleoside 5\'-monophosphate phosphohydrolase (survival protein) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RCIX1126 deoA; putative thymidine phosphorylase K18931 deoA; AMP phosphorylase [EC:2.4.2.57] D RCIX2492 codA; putative cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RCIX705 nrdD; anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent) K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D RCIX305 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D RCIX1311 tmk-1; putative thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RCIX2044 tmk-2; putative thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D RCIX1986 dut; putative dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D LRC337 thyA; putative thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:rci00250] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RCIX1956 asnB-1; asparagine synthetase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RCIX2428 asnB-2; putative asparagine synthetase,glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RCIX1588 arcB; ornithine cyclodeaminase K19244 ala; alanine dehydrogenase [EC:1.4.1.1] D RCIX1377 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RCIX271 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RCIX1751 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D RCIX2420 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D RCIX1029 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D RCIX1028 pyrI; aspartate carbamoyltransferase, regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D RRC282 gltD; NADPH-dependent glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D LRC422 gdh-2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D LRC421 gdh-1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D RCIX942 glnA-2; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX649 glnA-1; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX1369 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D RCIX1367 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D LRC114 purQ; putative phosphoribosylformylglycinamidine synthase, glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RCIX1436 glmS; glutamine-fructose-6-phosphate amidotransferase,isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D LRC233 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:rci00260] D RCIX1827 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RCIX722 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LRC427 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RCIX2142 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D LRC583 thrC-3; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D LRC376 thrC-1; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RCIX1736 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D RCIX2676 ttuD; putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D RCIX2675 predicted phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX2144 gpmA-2; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX838 gpmA-1; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D RCIX1538 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RCIX1735 serB-2; putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX91 gabD; succinate-semialdehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8] D RCIX2438 predicted SAM-dependent methyltransferase K18896 gsmt; glycine/sarcosine N-methyltransferase [EC:2.1.1.156] D RCIX793 trpA; tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RCIX794 trpB; tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RCIX2635 tryptophan synthase, beta chain-like K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:rci00270] D RRC88 metE; putative methylcobalamin:homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RCIX2255 mat; archaeal S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RRC334 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RRC11 predicted chlorohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D RCIX2368 putative purine phosphorylase (family 2) K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D RCIX2264 eif2b1; translation initiation factor 2B, subunit 1 K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D RCIX2529 dcm; C-5 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RRC46 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RCIX1827 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RCIX722 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D LRC427 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RCIX1241 conserved hypothetical protein K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16] D RCIX1242 2(4Fe-4S) ferredoxin-domain protein K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin D RCIX1556 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D RCIX1554 metY; O-acetyl-L-homoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D RCIX558 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RCIX1538 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:rci00280] D RCIX558 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRC500 hibD; putative 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RCIX149 conserved hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rci00290] D LRC535 leuA-1; 2-isopropylmalate synthase K09011 cimA; (R)-citramalate synthase [EC:2.3.3.21] D RCIX990 leuC-1; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RRC265 leuC-3; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D RRC266 leuD-3; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D RCIX991 leuD-1; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D LRC534 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRC533 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D LRC519 ilvC; alpha-keto-beta-hydroxylacil reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RCIX238 ilvD-1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RCIX1841 ilvD-2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RCIX558 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RCIX673 leuA-2; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:rci00300] D LRC427 thrA; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D RCIX1827 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RCIX722 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RCIX736 dapA-1; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RCIX2091 dapA-2; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RCIX734 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D RCIX1575 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RCIX1964 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RCIX1962 aat-3; putative aspartate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D RCIX1963 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D RCIX2647 leuA-4; 2-isopropylmalate synthase K10977 aksA; methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-] D RCIX2646 leuC-2; 3-isopropylmalate dehydratase, large subunit K16792 aksD; methanogen homoaconitase large subunit [EC:4.2.1.114] D RCIX2645 leuD-2; 3-isopropylmalate dehydratase, small subunit K16793 aksE; methanogen homoaconitase small subunit [EC:4.2.1.114] D RCIX2644 leuB-2; 2-isopropylmalate dehydrogenase K10978 aksF; methanogen homoisocitrate dehydrogenase [EC:1.1.1.87 1.1.1.-] D RRC4 putative aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] C 00310 Lysine degradation [PATH:rci00310] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RRC148 conserved hypothetical protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis [PATH:rci00220] D RCIX2167 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D RCIX1377 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RCIX271 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D LRC523 argI-1; arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D RCIX2268 argI-2; putative arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D LRC114 purQ; putative phosphoribosylformylglycinamidine synthase, glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RCIX942 glnA-2; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX649 glnA-1; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D LRC422 gdh-2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D LRC421 gdh-1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D LRC66 argJ; arginine biosynthesis bifunctional protein (glutamate N-acetyltransferase, EC 2.3.1.35/ornithine acetyltransferase, EC 2.3.1.1) K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D RRC322 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D LRC63 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D RCIX1777 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D RCIX1575 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RCIX906 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:rci00330] D RCIX2492 codA; putative cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D RRC25 speA; pyruvoyl-dependent arginine decarboxylase 1 K02626 pdaD; arginine decarboxylase [EC:4.1.1.19] D LRC54 speB; agmatine ureohydrolase K01480 speB; agmatinase [EC:3.5.3.11] D RCIX762 putative amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D LRC523 argI-1; arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D RCIX2268 argI-2; putative arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:rci00340] D RCIX583 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D RCIX2673 hisE; phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D RCIX21 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D RCIX677 hisA-1; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D RRC389 hisA-2; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D RCIX1927 hisH-1; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D RCIX1980 hisH-2; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D RCIX1928 hisF-1; imidazole glycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D RCIX2038 hisF-2; imidazole glycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D RRC390 hisB; putative imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D RCIX2460 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RCIX41 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:rci00350] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RCIX2460 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RCIX1543 mfnA; pyridoxal-dependent L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00360 Phenylalanine metabolism [PATH:rci00360] D LRC13 paaK-2; putative phenylacetate--coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D LRC7 paaK-1; putative phenylacetate--coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D LRC14 paaK-3; putative phenylacetate--coenzyme A ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D LRC474 paaI; putative phenylacetic acid degradation protein K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RCIX2460 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism [PATH:rci00380] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RCIX619 katE; monofunctional large subunit heme catalase (type I, clade II) K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rci00400] D RRC153 aroF; putative 2-dehydro-3-deoxy-phosphoheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D RRC152 aroB; putative 3-dehydroquinate synthase K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24] D RCIX1512 aroD; putative 3-dehydroquinate dehydratase (class I) K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10] D RCIX1312 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D RCIX1316 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D RCIX508 aroA; putative 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D RCIX509 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D RCIX797 trpE; anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RCIX796 trpGD; anthranilate synthase, component II (including glutamine amidotransferase, EC 2.4.2.18) K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18] D RCIX795 trpF; N-(5\'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D RCIX799 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D RCIX793 trpA; tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D RCIX794 trpB; tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RCIX2635 tryptophan synthase, beta chain-like K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D RCIX1315 aroQ; chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5] D RCIX1314 tyrA; putative prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D RRC474 pheA; putative prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RCIX2460 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:rci00410] D RCIX1543 mfnA; pyridoxal-dependent L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] D RCIX860 conserved hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] C 00430 Taurine and hypotaurine metabolism [PATH:rci00430] D RCIX1588 arcB; ornithine cyclodeaminase K19244 ala; alanine dehydrogenase [EC:1.4.1.1] D LRC422 gdh-2; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D LRC421 gdh-1; glutamate dehydrogenase K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] C 00440 Phosphonate and phosphinate metabolism D RCIX2248 putative metallo-beta-lactamase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:rci00450] D RRC88 metE; putative methylcobalamin:homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D RCIX2151 nifS; putative cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D RRC321 trxB-2; NADPH:thioredoxin reductase (TrxR) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D RRC481 sat; sulfate adenylyltransferase (sulfurylase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D RRC417 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:rci00460] D LRC258 bglX; putative thermostable beta-glucosidase (glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21] D RCIX1736 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:rci00470] D LRC114 purQ; putative phosphoribosylformylglycinamidine synthase, glutamine amidotransferase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D RCIX1964 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D RCIX1963 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism D RCIX2363 gnd; putative 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis C 00550 Peptidoglycan biosynthesis C 00552 Teichoic acid biosynthesis [PATH:rci00552] D RCIX1060 putative glycosyltransferase (group 1) K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:rci00730] D RCIX99 thiC-1; thiamine biosynthesis protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D RCIX1833 thiD; putative phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D RCIX1570 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX1562 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX1548 thiI-2; putative thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RCIX732 thiI-1; putative thiamine biosynthesis ATP pyrophosphatase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RCIX2677 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D RCIX2678 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D RRC167 thiL-2; putative thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D RCIX961 putative GTPase (EngC family) K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RCIX2570 adk-2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:rci00740] D LRC156 ribD; 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase (riboflavin-specific deaminase) K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D RRC489 predicted riboflavin specific deaminase K14654 RIB7; 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase [EC:1.1.1.302] D RCIX632 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D RRC57 ribH; riboflavin synthase, beta subunit K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D RRC56 ribC; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D RCIX631 conserved hypothetical protein K07732 rfk; riboflavin kinase, archaea type [EC:2.7.1.161] D LRC62 taqD; glycerol-3-phosphate cytidyltransferase K14656 ribL; FAD synthetase [EC:2.7.7.2] D RCIX2677 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D RRC449 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:rci00750] D LRC583 thrC-3; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D LRC376 thrC-1; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D RRC68 pdxS; putative pyridoxal biosynthesis lyase K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D LRC426 pdxT; glutamine amidotransferase, glutaminase subunit K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:rci00760] D RCIX226 nadX; putative aspartate dehydrogenase K06989 nadX; aspartate dehydrogenase [EC:1.4.1.21] D RCIX1383 nadA; quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D RCIX225 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D RCIX2221 surE; nucleoside 5\'-monophosphate phosphohydrolase (survival protein) K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D RCIX2287 nadR; nicotinamide-nucleotide adenylyltransferase K00952 nadM; nicotinamide-nucleotide adenylyltransferase [EC:2.7.7.1] D RCIX358 nadE; NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D LRC51 ppnK; NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:rci00770] D LRC534 ilvB; acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D LRC533 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D LRC519 ilvC; alpha-keto-beta-hydroxylacil reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D RCIX238 ilvD-1; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RCIX1841 ilvD-2; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D RCIX2330 apbA; putative 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D RCIX620 predicted archaea-specific kinase (GHMP-like family) K06982 pok; pantoate kinase [EC:2.7.1.169] D RCIX860 conserved hypothetical protein K09722 K09722; 4-phosphopantoate---beta-alanine ligase [EC:6.3.2.36] D RCIX622 dfp; DNA/pantothenate metabolism flavoprotein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D RCIX1100 coaD; putative phosphopantetheine adenylyltransferase K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D RCIX625 conserved hypothetical protein K09735 dpck; GTP-dependent dephospho-CoA kinase [EC:2.7.1.237] D RCIX558 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RCIX1543 mfnA; pyridoxal-dependent L-tyrosine decarboxylase K18933 mfnA; tyrosine decarboxylase / aspartate 1-decarboxylase [EC:4.1.1.25 4.1.1.11] C 00780 Biotin metabolism [PATH:rci00780] D RCIX1760 birA; biotin--(acetyl-CoA-carboxylase) synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:rci00785] D RRC130 lipA; putative lipoate synthetase (pyruvate dehydrogenase cofactor) K03644 lipA; lipoyl synthase [EC:2.8.1.8] D RRC120 lipoate-protein ligase A, N-terminal fragment K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D RRC121 lipoate-protein ligase A, C-terminal fragment K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RRC128 pdhA; pyruvate dehydrogenase complex E1, transketolase alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D RRC126 pdhB; pyruvate dehydrogenase complex E1, transketolase beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D RRC124 pdhC; pyruvate dehydrogenase complex E2,dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00790 Folate biosynthesis [PATH:rci00790] D RCIX32 ptpS; putative 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RCIX33 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RCIX36 exsB; succinoglycan biosynthesis regulator K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RCIX633 conserved hypothetical protein K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39] D LRC194 conserved hypothetical protein K17488 mptA; GTP cyclohydrolase IV [EC:3.5.4.39] D RCIX1526 conserved hypothetical protein K09739 mptD; dihydroneopterin aldolase [EC:4.1.2.25] D RCIX381 conserved hypothetical protein K07142 mptE; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D LRC185 predicted archaea-specific kinase (GHMP family) K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D LRC387 predicted archaea-specific kinase (GHMP family) K06984 K06984; beta-ribofuranosylaminobenzene 5'-phosphate synthase [EC:2.4.2.54] D RCIX2724 putative metallo-beta-lactamase K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D RRC38 2(4Fe-4S) ferredoxin-domain protein K18853 dmrX; dihydromethanopterin reductase (acceptor) [EC:1.5.99.15] D RCIX1842 moeA-5; putative molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RCIX2358 moaC; molybdopterin biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RCIX2408 mobB; molybdopterin-guanine dinucleotide biosynthesis protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RCIX901 moaB; molybdopterin biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D RCIX661 moeA-1; molybdopterin biosynthesis protein A K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RCIX662 moeA-2; molybdopterin biosynthesis protein A K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RCIX1627 moeA-3; molybdopterin biosynthesis protein A K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RCIX1645 moeA-4; molybdopterin biosynthesis protein A K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D RCIX886 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:rci00670] D RCIX1736 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D LRC337 thyA; putative thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:rci00860] D LRC306 gluS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RCIX911 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D RCIX913 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RCIX912 hemB; delta-aminolevulinic acid dehydratase (porphobilinogen synthase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RCIX914 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D RCIX916 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D RCIX1909 hemG; putative protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D RCIX915 cysG; uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D RCIX909 putative bifunctional precorrin-2 oxidase/ferrochelatase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D RRC53 predicted cobalamin biosynthesis protein (CbiX-like) K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D RCIX2006 cbiX-1; putative sirohydrochlorin cobaltochelatase K22011 cfbA; sirohydrochlorin cobalto/nickelchelatase [EC:4.99.1.3 4.99.1.11] D RCIX825 cbiA-2; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D RCIX2662 cobQ; cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D RCIX2654 cbiB; adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D RCIX826 hypothetical protein similar to adenosylcobinamide amidohydrolase (CbiZ, EC 3.5.1.90) K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90] D RCIX2651 putative nucleotidyltransferase K19712 cobY; adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.7.62] D RCIX2652 cobS; cobalamin-5-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D RCIX2655 cobD; putative L-threonine-O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D RCIX2001 cbiA-1; cobyrinic acid a,c-diamide synthase K22012 cfbB; Ni-sirohydrochlorin a,c-diamide synthase [EC:6.3.5.12] D RCIX2002 nifH-2; nitrogenase iron protein (nitrogenase reductase) K21610 cfbC; Ni-sirohydrochlorin a,c-diamide reductive cyclase subunit CfbC [EC:6.3.3.7] D RCIX2003 conserved hypothetical nitrogenase-related protein K21611 cfbD; Ni-sirohydrochlorin a,c-diamide reductive cyclase subunit CfbD [EC:6.3.3.7] D RCIX2005 murD; putative UDP-N-acetylmuramoylalanine-D-glutamate ligase K21612 cfbE; coenzyme F430 synthetase [EC:6.4.1.9] D RCIX1053 bfr; putative bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rci00130] D RRC449 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D RCIX2436 menA-1; putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D RCIX2657 menA-2; putative 1,4-dihydroxy-2-naphtoate octaprenyl transferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D RCIX1586 predicted redox-active protein (CxxC motif) K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D LRC129 predicted methyltransferase (UbiE/COQ5 family) K18534 K18534; MPBQ/MSBQ methyltransferase [EC:2.1.1.295] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:rci00900] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RCIX149 conserved hypothetical protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10] D RCIX1027 hmgA; 3-hydroxy-3-methylglutaryl-coenzyme a reductase (hmg-coa reductase) K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] D RCIX376 hmgA; 3-hydroxy-3-methylglutaryl-coenzyme A reductase K00054 mvaA; hydroxymethylglutaryl-CoA reductase [EC:1.1.1.88] D LRC399 mvk; mevalonate kinase K00869 MVK; mevalonate kinase [EC:2.7.1.36] D LRC398 amino acid kinase K06981 ipk; isopentenyl phosphate kinase [EC:2.7.4.26] D LRC243 conserved hypothetical protein K25517 acnX1; phosphomecalonate degydratase large subunit [EC:4.2.1.182] D LRC241 conserved hypothetical protein K09128 acnX2; phosphomecalonate degydratase small subunit [EC:4.2.1.182] D RRC445 4-hydroxybenzoate decarboxylase K25518 E4.1.1.126; anhydromevalonate phosphate decarboxylase [EC:4.1.1.126] D RRC449 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D LRC397 fni; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D RCIX2437 crtE; putative farnesyltranstransferase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RCIX1254 putative polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RCIX1132 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RCIX889 uppS-1; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RRC441 uppS-2; putative undecaprenyl pyrophosphate synthetase K15888 uppS; tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:rci00523] D RCIX198 rfbA-1; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LRC555 rfbA-2; putative glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RCIX1434 rfbA-3; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RCIX1438 rfbA-4; glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RCIX200 rfbB-1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LRC553 rfbB-2; putative dTDP-glucose 4-6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RCIX202 rfbC; dTDP-4-dehydrorhamnose 3,5 epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RCIX199 rfbD-1; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D LRC21 rfbD-2; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D RCIX200 rfbB-1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LRC553 rfbB-2; putative dTDP-glucose 4-6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids [PATH:rci00946] D LRC258 bglX; putative thermostable beta-glucosidase (glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:rci00261] D RRC481 sat; sulfate adenylyltransferase (sulfurylase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D RCIX1827 lysC; aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D RCIX722 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D RCIX736 dapA-1; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RCIX2091 dapA-2; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D RCIX734 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:rci00521] D RCIX2409 pgm-2; phosphoglucomutase/phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D RRC40 suhB; archaeal specific fructose-1,6-bisphosphatase/inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D RCIX198 rfbA-1; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LRC555 rfbA-2; putative glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RCIX1434 rfbA-3; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RCIX1438 rfbA-4; glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RCIX200 rfbB-1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LRC553 rfbB-2; putative dTDP-glucose 4-6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D RCIX202 rfbC; dTDP-4-dehydrorhamnose 3,5 epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D RCIX199 rfbD-1; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D LRC21 rfbD-2; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis C 00525 Acarbose and validamycin biosynthesis [PATH:rci00525] D RCIX198 rfbA-1; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D LRC555 rfbA-2; putative glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RCIX1434 rfbA-3; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D RCIX1438 rfbA-4; glucose-1-phosphate thymidylyltransferase K23144 K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276] D RCIX200 rfbB-1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D LRC553 rfbB-2; putative dTDP-glucose 4-6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:rci00401] D RCIX1314 tyrA; putative prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RCIX2460 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:rci00405] D RRC1 putative phenazine biosynthesis protein (PhzC/PhzF family) K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D RCIX797 trpE; anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics C 00999 Biosynthesis of various plant secondary metabolites [PATH:rci00999] D RCIX2255 mat; archaeal S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RRC334 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D RCIX1312 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D LRC258 bglX; putative thermostable beta-glucosidase (glycoside hydrolase family 3) K05349 bglX; beta-glucosidase [EC:3.2.1.21] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:rci00362] D RCIX982 putative hydrolase (alpha/beta fold family) K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D RCIX321 dmpI-1; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D RCIX959 dmpI-3; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D RCIX875 dmpI-2; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D RRC209 cmd-3; putative carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:rci00627] D RCIX552 acyP; acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D RRC449 putative aromatic acid decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:rci00625] D RCIX1613 nifK; nitrogenase molybdenum-iron protein, subunit beta (dinitrogenase) K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D RCIX1606 nifH-1; nitrogenase iron protein (nitrogenase reductase) K02588 nifH; nitrogenase iron protein NifH D RCIX1611 nifD; nitrogenase molybdenum-iron protein, subunit alpha (dinitrogenase) K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D RCIX2285 fdh; NAD-dependent formaldehyde dehydrogenase K00148 fdhA; glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation D RCIX321 dmpI-1; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D RCIX959 dmpI-3; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D RCIX875 dmpI-2; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00633 Nitrotoluene degradation [PATH:rci00633] D RRC510 predicted FMN oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-] D RCIX489 porA-1; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RRC107 porA-2; pyruvate:ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1] D RCIX490 porB-1; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC106 porB-2; pyruvate:ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1] D RRC109 porC-2; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX486 porC-1; pyruvate:ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1] D RCIX488 porD-1; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] D RRC110 porD-2; pyruvate:ferredoxin oxidoreductase, delta subunit K00171 porD; pyruvate ferredoxin oxidoreductase delta subunit [EC:1.2.7.1] C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation D RCIX321 dmpI-1; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D RCIX959 dmpI-3; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D RCIX875 dmpI-2; putative 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] C 00626 Naphthalene degradation C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:rci03020] D LRC356 rpoB2; DNA-directed RNA polymerase, subunit B2 K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] D LRC354 rpoB1; DNA-directed RNA polymerase, subunit B1 K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6] D LRC357 rpoA1; DNA-directed RNA polymerase, subunit A1 K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D LRC358 rpoA2; DNA-directed RNA polymerase, subunit A2 K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D RCIX2583 rpoD; DNA-directed RNA polymerase, subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D LRC270 rpoL; DNA-directed RNA polymerase, subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D RCIX2017 rpoE; DNA-directed RNA polymerase, subunit E K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D RCIX2350 rpoF; DNA-directed RNA polymerase, subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D LRC403 rpoK; DNA-directed RNA polymerase, subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D LRC404 rpoN; DNA-directed RNA polymerase, subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D RCIX2127 rpoP; DNA-directed RNA polymerase, subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] C 03022 Basal transcription factors [PATH:rci03022] D RCIX2108 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D RCIX1238 tbpE; TATA-box binding protein E K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D LRC274 tfeA; transcription initiation factor IIE, alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D RCIX2277 repD; putative ATP-dependent DNA-repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RCIX2394 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome D RRC101 small nuclear riboprotein-like protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 B B 09122 Translation C 03010 Ribosome [PATH:rci03010] D LRC401 rps2p; 30S ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D RCIX2548 rps3p; 30S ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D RCIX2581 rps4p; 30S ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D RCIX2566 rps5p; 30S ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D LRC363 rps7p; 30S ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D RCIX2561 rps8p; 30S ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D LRC405 rps9p; 30S ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D LRC366 rps10p; 30S ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D RCIX2582 rps11p; 30S ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D LRC361 rps12p; 30S ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D RCIX2580 rps13p; putative 30S ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D RCIX2559 rps14p; 30S ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D LRC56 rps15p; 30S ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D RCIX2553 rps17p; 30S ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D RCIX2545 rps19p; 30S ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D RCIX2276 rps3ae; 30S ribosomal protein S3AE K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D RCIX2557 rps4e; 30S ribosomal protein S4E K02987 RP-S4e; small subunit ribosomal protein S4e D LRC420 rps6e; 30S ribosomal protein S6E K02991 RP-S6e; small subunit ribosomal protein S6e D RCIX2682 rps8e; 30S ribosomal protein S8E K02995 RP-S8e; small subunit ribosomal protein S8e D RCIX737 rps17e; 30s ribosomal protein S17E K02962 RP-S17e; small subunit ribosomal protein S17e D RCIX1047 rps19e; 30S ribosomal protein S19E K02966 RP-S19e; small subunit ribosomal protein S19e D LRC296 rps27e; 30S ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e D RCIX627 rps27ae; 30S ribosomal protein S27AE K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D LRC144 rps28e; 30S ribosomal protein S28E K02979 RP-S28e; small subunit ribosomal protein S28e D LRC26 rpl1p; 50S ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D RCIX2544 rpl2p; 50S ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D RCIX2540 rpl3p; 50S ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D RCIX2558 rpl5p; 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D RCIX2562 rpl6p; 50S ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D LRC25 rpl10e; 50S ribosomal protein L10E K02864 RP-L10; large subunit ribosomal protein L10 D LRC27 rpl11p; 50S ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D LRC24 rpl12p; putative 50S ribosomal protein L12P K02869 RP-L12; large subunit ribosomal protein L12 D LRC406 rpl13p; 50S ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D RCIX2554 rpl14p; 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D RCIX2568 rpl15p; 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D RCIX2565 rpl18p; 50S ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D RCIX2546 rpl22p; 50S ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D RCIX2543 rpl23p; 50S ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D RCIX2556 rpl24p; 50S ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D RCIX2549 rpl29p; 50S ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D RCIX2567 rpl30p; 50S ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D RCIX2542 rpl4p; 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e D LRC145 rpl7ae; 50S ribosomal protein L7AE K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D RCIX1996 rpl10e; 50S ribosomal protein L10E K02866 RP-L10e; large subunit ribosomal protein L10e D RCIX2117 rpl15e; 50S ribosomal protein L15E K02877 RP-L15e; large subunit ribosomal protein L15e D LRC407 rpl18e; 50S ribosomal protein L18E K02883 RP-L18e; large subunit ribosomal protein L18e D RCIX2564 rpl19e; 50S ribosomal protein L19E K02885 RP-L19e; large subunit ribosomal protein L19e D RCIX2349 rpl21e; 50S ribosomal protein L21E K02889 RP-L21e; large subunit ribosomal protein L21e D LRC359 rpl30e; 50S ribosomal protein L30E K02908 RP-L30e; large subunit ribosomal protein L30e D RCIX1043 rpl31e; 50S ribosomal protein L31E K02910 RP-L31e; large subunit ribosomal protein L31e D RCIX2563 rpl32e; putative 50S ribosomal protein L32E K02912 RP-L32e; large subunit ribosomal protein L32e D RCIX2126 rpl37ae; 50S ribosomal protein L37AE K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D RCIX1433 rpl40e; 50S ribosomal protein L40E K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D LRC297 rpl44e; 50S ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e D RCIX1041 rplX; 50S ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D 16S_rRNA-1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 16S_rRNA-3 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 16S_rRNA-2 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 23S_rRNA-1 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-3 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 5S_rRNA-1 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D 5S_rRNA-3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D 5S_rRNA-2 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:rci00970] D tRNA-Ala-2 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Ala-1 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Ala-3 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Ala-4 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Arg-1 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-2 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-3 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-4 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-5 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Asn tRNA-Asn; tRNA-Asn K14220 tRNA-Asn; tRNA Asn D tRNA-Asp tRNA-Asp; tRNA-Asp K14221 tRNA-Asp; tRNA Asp D tRNA-Cys-2 tRNA-Cys; tRNA-Cys K14222 tRNA-Cys; tRNA Cys D tRNA-Cys-1 tRNA-Cys; tRNA-Cys K14222 tRNA-Cys; tRNA Cys D tRNA-Gln-1 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Gln-2 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Glu-2 tRNA-Glu; tRNA-Glu K14224 tRNA-Glu; tRNA Glu D tRNA-Glu-1 tRNA-Glu; tRNA-Glu K14224 tRNA-Glu; tRNA Glu D tRNA-Gly-1 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-2 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-3 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-4 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-His tRNA-His; tRNA-His K14226 tRNA-His; tRNA His D tRNA-Ile-1 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Ile-2 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Leu-1 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-3 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-4 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-2 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-5 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Lys-1 tRNA-Lys; tRNA-Lys K14229 tRNA-Lys; tRNA Lys D tRNA-Lys-2 tRNA-Lys; tRNA-Lys K14229 tRNA-Lys; tRNA Lys D tRNA-Met-2 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-1 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-3 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Phe tRNA-Phe; tRNA-Phe K14231 tRNA-Phe; tRNA Phe D tRNA-Pro-2 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Pro-1 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Pro-3 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Ser-3 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-1 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-2 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-4 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Thr-3 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-4 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-2 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-1 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Trp tRNA-Trp; tRNA-Trp K14235 tRNA-Trp; tRNA Trp D tRNA-Tyr tRNA-Tyr; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D tRNA-Val-1 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val D tRNA-Val-2 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val D tRNA-Val-3 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val D LRC306 gluS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RCIX2430 gatA; glutamyl-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RCIX2431 gatB-1; glutamyl-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RCIX2429 gatC; glutamyl-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D RCIX272 ansB; asparaginase K09482 gatD; glutamyl-tRNA(Gln) amidotransferase subunit D [EC:6.3.5.7] D RCIX273 gatB-2; glutamyl-tRNA(Gln) amidotransferase, subunit B K03330 gatE; glutamyl-tRNA(Gln) amidotransferase subunit E [EC:6.3.5.7] D RCIX939 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RRC497 alanyl-tRNS synthetase-related protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RCIX42 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RCIX1877 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RCIX1267 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RCIX1693 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LRC224 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RRC273 conserved PheS-like protein K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27] D RCIX2270 conserved hypothetical protein K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] D RCIX1553 predicted archaea-specific pyridoxal phosphate-dependent enzyme K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] D RRC371 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RRC417 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D LRC303 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RCIX858 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RCIX379 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RCIX1106 lysS; lysyl-tRNA synthetase (lysine--tRNA ligase) (LysRS) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RCIX568 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RRC469 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D LRC67 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RRC220 pheS; phenylalanyl-tRNA synthetase, alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RRC225 pheT; phenylalanyl-tRNA synthetase, beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RCIX2415 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RRC219 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:rci03060] D RCIX2569 secY; protein translocase, subunit Y K03076 secY; preprotein translocase subunit SecY D RCIX1306 predicted protein secretion system (SecD/SecF family) K03072 secD; preprotein translocase subunit SecD D RCIX1307 predicted protein secretion system (SecD/SecF family) K03074 secF; preprotein translocase subunit SecF D RCIX2337 srp54; signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RCIX1038 ftsY; putative signal recognition particle K03110 ftsY; fused signal recognition particle receptor D LRC29 secE; putative preprotein translocase, subunit E K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D RCIX2112 srp19; signal recognition particle K03105 SRP19; signal recognition particle subunit SRP19 D RCIX1503 tatA; sec-independent protein translocase (twin-arginine translocation protein) K03116 tatA; sec-independent protein translocase protein TatA D LRC383 putative sec-independent protein translocase (TatA-like) K03116 tatA; sec-independent protein translocase protein TatA D RCIX1260 tatC-2; sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC D RCIX879 tatC-1; putative sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC D RCIX1015 signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RCIX752 signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RCIX1120 putative signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RCIX1118 putative signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:rci04122] D RCIX1570 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX1562 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX2408 mobB; molybdopterin-guanine dinucleotide biosynthesis protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D RCIX1842 moeA-5; putative molybdopterin biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D RCIX1567 ThiS/MoaD sulfur transfer protein K03636 moaD; sulfur-carrier protein D RCIX2088 ThiS/MoaD sulfur transfer protein K03636 moaD; sulfur-carrier protein D RCIX1566 ThiF/MoeB sulfur transfer protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D RRC447 ThiF/MoeB sulfur transfer protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D RRC316 conserved hypothetical protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D RCIX2358 moaC; molybdopterin biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D RCIX901 moaB; molybdopterin biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D RCIX1548 thiI-2; putative thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RCIX732 thiI-1; putative thiamine biosynthesis ATP pyrophosphatase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RCIX2153 predicted ThiS sulfur transfer protein K03154 thiS; sulfur carrier protein D RRC67 predicted protease (Mov34 family) K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6] C 03050 Proteasome [PATH:rci03050] D RCIX2455 pan-2; 26s proteasome, regulatory subunit (proteasome-activating nucleotidase) K03420 psmR; proteasome regulatory subunit D RCIX1184 pan-1; 26S proteasome regulatory subunit (proteasome-activating nucleotidase) K03420 psmR; proteasome regulatory subunit D RCIX2121 psmA; 20S proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RCIX2364 psmB; 20S proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] C 03018 RNA degradation [PATH:rci03018] D LRC269 conserved hypothetical protein K07573 CSL4; exosome complex component CSL4 D RCIX2123 conserved hypothetical protein K03679 RRP4; exosome complex component RRP4 D RCIX2125 rrp42p; putative exosome complex exonuclease 2 K12589 RRP42; exosome complex component RRP42 D RCIX2124 rrp41p; putative exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D RRC101 small nuclear riboprotein-like protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 D LRC402 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RCIX2731 rnb; putative exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1] D LRC345 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RRC430 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RCIX1772 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RCIX2412 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RCIX566 metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D LRC95 predicted metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D LRC396 metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D LRC471 dnaK; chaperonin Hsp70 K04043 dnaK; molecular chaperone DnaK B B 09124 Replication and repair C 03030 DNA replication [PATH:rci03030] D RCIX283 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RCIX2511 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RCIX928 rnh; ribonuclease H (RNase H) K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RRC383 polB-4; DNA-directed DNA polymerase B K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D RCIX2734 polB-3; putative DNA-directed DNA polymerase B K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D LRC154 polB-1; DNA-directed DNA polymerase B K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D RCIX1121 pol2a; DNA-directed DNA polymerase D, small subunit K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D RCIX896 pol2b; DNA-directed DNA polymerase D, large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D RCIX2243 mcm; putative DNA replication licensing factor K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D LRC299 priA; DNA primase, small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D RCIX2295 priB; DNA primase, large subunit K18882 priL; DNA primase large subunit D RCIX2293 pcn; putative DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen D LRC39 rfcS; replication factor C (clamp loader), small subunit K04801 rfcS; replication factor C small subunit D RCIX1805 rfcL; replication factor C, large subunit K04800 rfcL; replication factor C large subunit D RCIX607 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RRC227 lig; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03410 Base excision repair [PATH:rci03410] D RRC63 predicted endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RCIX927 predicted endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RCIX2536 putative DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RCIX1098 mpg; putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RCIX2293 pcn; putative DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen D RCIX607 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RRC227 lig; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D RCIX276 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RRC526 predicted uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RCIX1223 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RCIX2501 predicted endonuclease/exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RRC305 nfo; putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D LRC22 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RCIX2741 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2021 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2102 recJ; putative single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRC57 putative single-stranded DNA-specific exonuclease (RecJ-like) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] C 03420 Nucleotide excision repair [PATH:rci03420] D RRC360 uvrA-2; excinuclease ABC, ATPase subunit K03701 uvrA; excinuclease ABC subunit A D LRC310 pcrA; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RCIX2277 repD; putative ATP-dependent DNA-repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RCIX2394 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RCIX2293 pcn; putative DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen D RRC227 lig; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03430 Mismatch repair [PATH:rci03430] D LRC5 mutSb; putative DNA mismatch repair protein, N-terminal fragment K07456 mutS2; DNA mismatch repair protein MutS2 D LRC6 mutSa; putative DNA mismatch repair protein, C-terminal fragment K07456 mutS2; DNA mismatch repair protein MutS2 D LRC310 pcrA; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D RCIX2741 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2021 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2102 recJ; putative single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRC57 putative single-stranded DNA-specific exonuclease (RecJ-like) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRC316 dam; N6 adenine-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D RCIX2293 pcn; putative DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen D RRC227 lig; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] C 03440 Homologous recombination [PATH:rci03440] D RCIX2741 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2021 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2102 recJ; putative single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRC57 putative single-stranded DNA-specific exonuclease (RecJ-like) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2629 ruvA; holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA D RCIX2631 ruvB; holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RCIX2628 ruvC; holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] C 03450 Non-homologous end-joining [PATH:rci03450] D RCIX1966 conserved hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D RCIX607 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 D RCIX624 rpoE2; putative DNA-directed RNA polymerase, subunit E2 K15171 SUPT4H1; transcription elongation factor SPT4 D LRC28 rpl26e; 50S ribosomal protein L26E K15172 SUPT5H; transcription elongation factor SPT5 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:rci02010] D LRC334 ABC-type transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein D RCIX664 ABC-type transport system, permease component K05773 tupB; tungstate transport system permease protein D RCIX666 ABC-type transport system, ATPase component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D RCIX447 ssuA; putative ABC-type sulfonate import system,periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D RCIX445 ssuC; putative ABC-type sulfonate import system,permease component K15554 ssuC; sulfonate transport system permease protein D RCIX444 ssuB; putative ABC-type sulfonate import system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RCIX1621 modA; ABC-type molybdenum import system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein D RCIX1623 modB; ABC-type molybdenum import system, permease component K02018 modB; molybdate transport system permease protein D RCIX1625 modC; putative ABC-type molybdenum import system,ATPase component, N-terminal fragment K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D RCIX2749 pstS; high-affinity phosphate ABC-type import system,periplasmic component K02040 pstS; phosphate transport system substrate-binding protein D RCIX2751 pstC; high-affinity phosphate ABC-type import system,permease component 2 K02037 pstC; phosphate transport system permease protein D RCIX2753 pstA; high-affinity phosphate ABC-type import system,permease component 1 K02038 pstA; phosphate transport system permease protein D RCIX2754 pstB; high-affinity phosphate ABC-type import system,ATPase component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RRC171 cbiM-1b; cobalamin biosynthesis protein, C-terminal fragment K02009 cbiN; cobalt/nickel transport protein D RRC172 cbiM-1a; cobalamin biosynthesis protein, N-terminal fragment K02007 cbiM; cobalt/nickel transport system permease protein D LRC579 cbiM-2; putative cobalamin biosyntheis protein M K02007 cbiM; cobalt/nickel transport system permease protein D RRC176 cbiQ-1; putative ABC-type cobalt import system, permease component K02008 cbiQ; cobalt/nickel transport system permease protein D LRC577 putative ABC-type cobalt transport system,permease coponent K02008 cbiQ; cobalt/nickel transport system permease protein D RRC174 cbiO-1; putative ABC-type cobalt import system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RCIX1775 ABC-type transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D LRC578 putative ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RCIX1763 bioY; biotin synthesis protein Y K03523 bioY; biotin transport system substrate-specific component D RCIX1768 cbiQ-3; putative ABC-type cobalt import system, permease component K16785 ecfT; energy-coupling factor transport system permease protein D LRC327 cbiQ-2; putative ABC-type cobalt import system, permease component K16785 ecfT; energy-coupling factor transport system permease protein D RCIX1764 cbiO-3; putative ABC-type cobalt import system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RCIX1766 cbiO-4; putative ABC-type cobalt import system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RCIX217 putative ABC-type transport system, permease component (ABC-2 family) K09690 wzm; homopolymeric O-antigen transport system permease protein D RCIX216 putative ABC-type transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D RCIX1830 ABC-type transport system, permease component (ABC-2 family) (NodJ-like) K09694 nodJ; lipooligosaccharide transport system permease protein D RCIX1829 ABC-type transport system, ATPase component K09695 nodI; lipooligosaccharide transport system ATP-binding protein D RCIX1071 conserved hypothetical protein K16905 K16905; fluoroquinolone transport system permease protein D RCIX1070 conserved hypothetical protein K16906 K16906; fluoroquinolone transport system permease protein D RCIX1069 ABC-type transport system, ATPase component K16907 K16907; fluoroquinolone transport system ATP-binding protein [EC:7.6.2.-] C 02060 Phosphotransferase system (PTS) C 03070 Bacterial secretion system [PATH:rci03070] D RCIX1306 predicted protein secretion system (SecD/SecF family) K03072 secD; preprotein translocase subunit SecD D RCIX1307 predicted protein secretion system (SecD/SecF family) K03074 secF; preprotein translocase subunit SecF D RCIX2569 secY; protein translocase, subunit Y K03076 secY; preprotein translocase subunit SecY D RCIX1038 ftsY; putative signal recognition particle K03110 ftsY; fused signal recognition particle receptor D RCIX2337 srp54; signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RCIX1503 tatA; sec-independent protein translocase (twin-arginine translocation protein) K03116 tatA; sec-independent protein translocase protein TatA D LRC383 putative sec-independent protein translocase (TatA-like) K03116 tatA; sec-independent protein translocase protein TatA D RCIX1260 tatC-2; sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC D RCIX879 tatC-1; putative sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:rci02020] D RCIX2749 pstS; high-affinity phosphate ABC-type import system,periplasmic component K02040 pstS; phosphate transport system substrate-binding protein D RCIX1595 putative trypsin-like protease K04771 degP; serine protease Do [EC:3.4.21.107] D RCIX443 putative response regulator (CheY-like) K07668 vicR; two-component system, OmpR family, response regulator VicR D RRC404 predicted triphosphoribosyl-dephospho-CoA protein K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52] D RRC433 putative nitrogen regulator (P-II family) K04751 glnB; nitrogen regulatory protein P-II 1 D RCIX942 glnA-2; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX649 glnA-1; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D LRC584 cheR; chemotaxis MCP methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D RCIX1656 putative signal transduction histidine kinase K03406 mcp; methyl-accepting chemotaxis protein D RCIX191 tlpC; chemotaxis signal transducer K03406 mcp; methyl-accepting chemotaxis protein D RCIX655 cheW; chemotaxis signal transducer K03408 cheW; purine-binding chemotaxis protein CheW D LRC571 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRC569 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RRC476 putative response regulator (CheY-like) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RCIX2509 predicted response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRC570 cheB; chemotaxis methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RCIX1961 NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336] D RRC477 putative signal transduction histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis D LRC523 argI-1; arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] D RCIX2268 argI-2; putative arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:rci02024] D RCIX797 trpE; anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D RRC1 putative phenazine biosynthesis protein (PhzC/PhzF family) K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D LRC377 putative ABC-type peptide transport system,periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D LRC378 putative ABC-type peptide transport system,permease component 1 K02033 ABC.PE.P; peptide/nickel transport system permease protein D LRC379 putative ABC-type peptide transport system,permease component 2 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D LRC380 putative ABC-type peptide transport system,ATPase component 1 K02031 ddpD; peptide/nickel transport system ATP-binding protein D LRC381 putative ABC-type peptide transport system,ATPase component 2 K02032 ddpF; peptide/nickel transport system ATP-binding protein D RCIX2569 secY; protein translocase, subunit Y K03076 secY; preprotein translocase subunit SecY D RCIX1038 ftsY; putative signal recognition particle K03110 ftsY; fused signal recognition particle receptor D RCIX2337 srp54; signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:rci02030] D RCIX1656 putative signal transduction histidine kinase K03406 mcp; methyl-accepting chemotaxis protein D RCIX191 tlpC; chemotaxis signal transducer K03406 mcp; methyl-accepting chemotaxis protein D LRC571 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RCIX655 cheW; chemotaxis signal transducer K03408 cheW; purine-binding chemotaxis protein CheW D LRC569 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RRC476 putative response regulator (CheY-like) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RCIX2509 predicted response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RCIX2603 predicted chemotaxis protein (CheW/CheC-like) K03410 cheC; chemotaxis protein CheC D LRC572 cheC; chemotaxis MCP methylation-inhibitor K03410 cheC; chemotaxis protein CheC D LRC570 cheB; chemotaxis methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D LRC573 cheD; chemotaxis MCP methylation-stimulator K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D LRC584 cheR; chemotaxis MCP methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] C 02040 Flagellar assembly C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D LRC402 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance C 01502 Vancomycin resistance C 01503 Cationic antimicrobial peptide (CAMP) resistance D RCIX1595 putative trypsin-like protease K04771 degP; serine protease Do [EC:3.4.21.107] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:rci01000] C 01001 Protein kinases [BR:rci01001] D RCIX2234 gcp-b; O-sialoglycoprotein endopeptidase, C-terminal fragment K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D LRC287 putative serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D RRC337 predicted protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D LRC571 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RRC477 putative signal transduction histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D LRC113 predicted signal transduction histidine kinase K19694 chiS; two-component system, sensor histidine kinase ChiS C 01009 Protein phosphatases and associated proteins [BR:rci01009] D RCIX2244 eif2b-2; translation initiation factor 2, beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D RCIX1995 eif2b-1; translation initiation factor 2, beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D RRC46 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D RCIX1735 serB-2; putative phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:rci01002] D RCIX2250 predicted peptidase (A24 family) K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D RCIX1854 vhtD; putative coenzyme F420-nonreducing hydrogenase,subunit D (maturation factor) K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D RCIX554 frhD-2; coenzyme F420-reducing hydrogenase, delta subunit (maturation peptidase) K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51] D RCIX404 guaA-1; GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D RCIX1576 guaA-2; GMP synthase, glutamine-hydrolyzing K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D LRC233 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D RCIX1436 glmS; glutamine-fructose-6-phosphate amidotransferase,isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D RCIX1956 asnB-1; asparagine synthetase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RCIX2428 asnB-2; putative asparagine synthetase,glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D RCIX948 intracellular protease (C56 family) K05520 yhbO; deglycase [EC:3.5.1.124] D RCIX2680 conserved hypothetical protein K24447 artA; archaeosortase A [EC:3.4.22.-] D RCIX2642 hypothetical protein K07052 K07052; CAAX protease family protein D RCIX844 predicted CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D RCIX1504 conserved hypothetical protein K07052 K07052; CAAX protease family protein D RCIX2611 hypothetical protein K07052 K07052; CAAX protease family protein D RCIX1702 conserved hypothetical protein K07052 K07052; CAAX protease family protein D RRC16 map-2; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RCIX2452 map-1; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D RRC18 pepP; putative proline aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D RCIX872 putative aminopeptidase (M28 family) K19701 ywaD; aminopeptidase YwaD [EC:3.4.11.6 3.4.11.10] D RRC250 conserved hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D LRC41 conserved hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D RCIX108 ampS; putative leucyl aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D RCIX543 putative Zn-dependend thermostable carboxypeptidase (M32 family) K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19] D RCIX24 htpX; Zn-dependent chaperonin protease K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D RRC286 putative peptidase (M48 family) K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D RCIX257 putative acetyltransferase (GNAT family) K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D RCIX2160 conserved hypothetical protein K06974 amzA; archaemetzincin [EC:3.4.-.-] D RCIX756 hypothetical protein K24131 prsW; protease PrsW [EC:3.4.-.-] D RCIX1595 putative trypsin-like protease K04771 degP; serine protease Do [EC:3.4.21.107] D LRC18 putative proteinase K17734 aprX; serine protease AprX [EC:3.4.21.-] D RRC199 predicted alkaline serine protease K17734 aprX; serine protease AprX [EC:3.4.21.-] D RCIX267 putative alkaline serine protease K17734 aprX; serine protease AprX [EC:3.4.21.-] D RCIX438 lonB; ATP-dependent protease La K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D RCIX1015 signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RCIX752 signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RCIX1120 putative signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RCIX1118 putative signal sequence peptidase K13280 SEC11; signal peptidase I [EC:3.4.21.89] D RCIX312 putative periplasmic serine protease K04773 sppA; protease IV [EC:3.4.21.-] D RRC354 putative protease IV K04773 sppA; protease IV [EC:3.4.21.-] D RCIX1707 conserved hypothetical protein K07059 K07059; rhomboid family protein D RCIX2121 psmA; 20S proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RCIX2364 psmB; 20S proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RCIX434 putative peptidase (U62 family) K03592 pmbA; PmbA protein D RCIX2700 predicted peptidase (U62 family) K03592 pmbA; PmbA protein D RCIX2701 putative peptidase (U62 family) K03568 tldD; TldD protein D RCIX435 putative peptidase (U62 family) K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:rci01003] D LRC537 glycosyltransferase (family 2) K23684 aglJ; dolichol-phosphate hexosyltransferase [EC:2.4.1.-] D LRC541 transmembrane oligosaccharyltransferase K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase [EC:2.4.99.18] D LRC558 putative oligosaccharyltransferase K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21] D LRC539 transmembrane oligosaccharyltransferase K21306 aglB; dolichyl-phosphooligosaccharide-protein glycotransferase [EC:2.4.99.21] D RCIX2422 putative glycosyltransferase (family 2) K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] D RCIX1060 putative glycosyltransferase (group 1) K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D RCIX1328 putative glycosyltransferase (group 1) K16150 K16150; glycogen synthase [EC:2.4.1.11] D RCIX1324 putative glycosyltransferase (group 1) K16150 K16150; glycogen synthase [EC:2.4.1.11] C 01005 Lipopolysaccharide biosynthesis proteins [BR:rci01005] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rci01011] D RCIX2680 conserved hypothetical protein K24447 artA; archaeosortase A [EC:3.4.22.-] C 01004 Lipid biosynthesis proteins [BR:rci01004] D RCIX1692 acs-1; acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RRC211 acs-2; putative acetyl-CoA synthetase (AMP-forming) K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D RCIX1774 acdA; acetyl-coa synthetase (ADP-forming), alpha subunit K01905 acdA; acetate---CoA ligase (ADP-forming) subunit alpha [EC:6.2.1.13] D RCIX1773 acdB; acetyl-coa synthetase (ADP-forming), beta subunit K22224 acdB; acetate---CoA ligase (ADP-forming) subunit beta [EC:6.2.1.13] D RCIX831 acdAB; acetyl-CoA synthetase (ADP-forming), alpha and beta subunit fusion K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D RRC116 fadD; putative long chain fatty-acid CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:rci01006] D RCIX2437 crtE; putative farnesyltranstransferase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RCIX1254 putative polyprenyl synthetase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29] D RCIX1132 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D RCIX889 uppS-1; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D RCIX2436 menA-1; putative 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D RCIX2657 menA-2; putative 1,4-dihydroxy-2-naphtoate octaprenyl transferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] C 01007 Amino acid related enzymes [BR:rci01007] D RCIX1106 lysS; lysyl-tRNA synthetase (lysine--tRNA ligase) (LysRS) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D LRC306 gluS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RCIX2415 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RRC219 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RRC371 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D RCIX568 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RRC417 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RCIX379 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D LRC303 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D RCIX858 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RCIX1877 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RCIX42 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D LRC67 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RCIX1267 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D LRC224 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RRC469 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RCIX1693 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D RCIX939 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RRC497 alanyl-tRNS synthetase-related protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RRC273 conserved PheS-like protein K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27] D RRC220 pheS; phenylalanyl-tRNA synthetase, alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RRC225 pheT; phenylalanyl-tRNA synthetase, beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D LRC221 aat-1; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RRC58 aat-5; putative aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D RCIX1962 aat-3; putative aspartate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D RCIX1738 aat-2; putative aspartate aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-] D RCIX2460 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D RCIX1575 argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D RCIX913 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D RCIX558 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D RCIX1921 aminotransferase (DegT family) K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:rci00194] B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:rci03000] D RCIX2529 dcm; C-5 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RCIX1238 tbpE; TATA-box binding protein E K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D RRC9 putative transcription regulator (TetR family) K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D LRC109 transcription regulator (Lrp/AsnC family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RCIX105 transcription regulator (AsnC/Lrp family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RCIX103 transcription regulator (AsnC/Lrp family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RCIX1508 transcription regulator (AsnC/Lrp family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RCIX2247 putative transcription regulator (AsnC/Lrp family) K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D RRC234 transcription regulator (AsnC/Lrp family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RRC47 putative transcriptional regulator (AsnC/Lrp family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RCIX1230 putative transcription regulator (MarR family) K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D RCIX413 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RCIX310 hypothetical protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D RRC76 putative transcription regulator (ArsR family) K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RCIX2336 putative transcription regulator (ArsR family) K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D RCIX684 putative transcription regulator (ArsR family) K07721 K07721; ArsR family transcriptional regulator D RCIX2196 putative transcription regulator (PadR family) K10947 K10947; PadR family transcriptional regulator D RCIX1292 putative transcription regulator (PadR-like family) K10947 K10947; PadR family transcriptional regulator D RCIX1376 putative transcription regulator (PadR-like family) K10947 K10947; PadR family transcriptional regulator D RCIX1349 Fe-dependent transcription repressor (FeoA family) K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D LRC575 putative Fe-dependent transcription repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D RCIX1760 birA; biotin--(acetyl-CoA-carboxylase) synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RCIX1747 conserved hypothetical protein K09720 nrpRI; HTH-type transcriptional regulator, global nitrogen regulator NrpRI D RCIX1790 transcription regulator (TrmB family) K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RCIX1189 putative transcription regulator (TrmB family) K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RCIX1785 putative transcription regulator (TrmB family) K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RCIX90 hypothetical protein K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D LRC304 putative transcription regulator (TrmB family) K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D RCIX1640 conserved hypothetical protein K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator D RCIX571 predicted transcription regulator K09714 tfx; HTH-type transcriptional regulator, fmd operon transcriptional regulator D RCIX2284 pyrE-2; putative orotate phosphoribosyltransferase K26599 gfcR; HTH-type transcriptional regulator, activator of D-glucose/D-fructose catabolism D RCIX1430 predicted transcription regulator K07728 K07728; putative transcriptional regulator D RCIX125 putative transcription regulator K07729 K07729; putative transcriptional regulator D RCIX1527 putative transcription regulator K07729 K07729; putative transcriptional regulator D RCIX1140 transcription regulator (Crp family) K07730 K07730; putative transcriptional regulator D RCIX148 predicted transcription regulator K07731 K07731; putative transcriptional regulator D RRC178 predicted transcription regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D RCIX1458 parB; putative chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 03021 Transcription machinery [BR:rci03021] D RCIX2108 tfb; transcription initiation factor IIB K03124 TFIIB; transcription initiation factor TFIIB D RCIX1238 tbpE; TATA-box binding protein E K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein D LRC274 tfeA; transcription initiation factor IIE, alpha subunit K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha D RCIX2277 repD; putative ATP-dependent DNA-repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RCIX2394 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RCIX624 rpoE2; putative DNA-directed RNA polymerase, subunit E2 K15171 SUPT4H1; transcription elongation factor SPT4 D LRC28 rpl26e; 50S ribosomal protein L26E K15172 SUPT5H; transcription elongation factor SPT5 D LRC360 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D LRC357 rpoA1; DNA-directed RNA polymerase, subunit A1 K03041 rpoA1; DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] D LRC358 rpoA2; DNA-directed RNA polymerase, subunit A2 K03042 rpoA2; DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] D LRC356 rpoB2; DNA-directed RNA polymerase, subunit B2 K03044 rpoB1; DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] D LRC354 rpoB1; DNA-directed RNA polymerase, subunit B1 K03045 rpoB2; DNA-directed RNA polymerase subunit B" [EC:2.7.7.6] D RCIX2583 rpoD; DNA-directed RNA polymerase, subunit D K03047 rpoD; DNA-directed RNA polymerase subunit D [EC:2.7.7.6] D RCIX2017 rpoE; DNA-directed RNA polymerase, subunit E K03049 rpoE1; DNA-directed RNA polymerase subunit E' [EC:2.7.7.6] D RCIX2350 rpoF; DNA-directed RNA polymerase, subunit F K03051 rpoF; DNA-directed RNA polymerase subunit F [EC:2.7.7.6] D LRC403 rpoK; DNA-directed RNA polymerase, subunit K K03055 rpoK; DNA-directed RNA polymerase subunit K [EC:2.7.7.6] D LRC270 rpoL; DNA-directed RNA polymerase, subunit L K03056 rpoL; DNA-directed RNA polymerase subunit L [EC:2.7.7.6] D LRC404 rpoN; DNA-directed RNA polymerase, subunit N K03058 rpoN; DNA-directed RNA polymerase subunit N [EC:2.7.7.6] D RCIX2127 rpoP; DNA-directed RNA polymerase, subunit P K03059 rpoP; DNA-directed RNA polymerase subunit P [EC:2.7.7.6] D RCIX2292 tfs; archaeal transcription factor S K03057 tfs; transcription factor S C 03019 Messenger RNA biogenesis [BR:rci03019] D RCIX624 rpoE2; putative DNA-directed RNA polymerase, subunit E2 K15171 SUPT4H1; transcription elongation factor SPT4 D LRC28 rpl26e; 50S ribosomal protein L26E K15172 SUPT5H; transcription elongation factor SPT5 D RCIX691 cdc48-2; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX685 cdc48-1; putative cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX1130 cdc48-3; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX613 pelA; cell division protein pelota K06965 PELO; protein pelota D RCIX567 erf1; translation termination factor K03265 ETF1; peptide chain release factor subunit 1 D LRC365 tuf-1; translation elongation factor 1, alpha subunit K03231 EEF1A; elongation factor 1-alpha D RCIX2739 conserved GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D RRC101 small nuclear riboprotein-like protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 D LRC269 conserved hypothetical protein K07573 CSL4; exosome complex component CSL4 D RCIX2123 conserved hypothetical protein K03679 RRP4; exosome complex component RRP4 D RCIX2124 rrp41p; putative exosome complex exonuclease 1 K11600 RRP41; exosome complex component RRP41 D RCIX2125 rrp42p; putative exosome complex exonuclease 2 K12589 RRP42; exosome complex component RRP42 D RCIX566 metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D LRC95 predicted metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D LRC396 metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D RCIX2731 rnb; putative exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1] D LRC345 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RRC430 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RCIX1772 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RCIX2412 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D LRC402 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RRC499 pfkA; ATP-dependent 6-phosphofructokinase (PFK-A family) K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D LRC471 dnaK; chaperonin Hsp70 K04043 dnaK; molecular chaperone DnaK D RCIX1135 putative ATP-dependent DNA helicase K03725 K03725; putative ATP-dependent RNA helicase [EC:5.6.2.-] C 03041 Spliceosome [BR:rci03041] D RRC101 small nuclear riboprotein-like protein K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 C 03011 Ribosome [BR:rci03011] D RCIX2276 rps3ae; 30S ribosomal protein S3AE K02984 RP-S3Ae; small subunit ribosomal protein S3Ae D RCIX2557 rps4e; 30S ribosomal protein S4E K02987 RP-S4e; small subunit ribosomal protein S4e D LRC420 rps6e; 30S ribosomal protein S6E K02991 RP-S6e; small subunit ribosomal protein S6e D RCIX2682 rps8e; 30S ribosomal protein S8E K02995 RP-S8e; small subunit ribosomal protein S8e D RCIX737 rps17e; 30s ribosomal protein S17E K02962 RP-S17e; small subunit ribosomal protein S17e D RCIX1047 rps19e; 30S ribosomal protein S19E K02966 RP-S19e; small subunit ribosomal protein S19e D LRC296 rps27e; 30S ribosomal protein S27E K02978 RP-S27e; small subunit ribosomal protein S27e D RCIX627 rps27ae; 30S ribosomal protein S27AE K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D LRC144 rps28e; 30S ribosomal protein S28E K02979 RP-S28e; small subunit ribosomal protein S28e D RCIX2542 rpl4p; 50S ribosomal protein L4P K02930 RP-L4e; large subunit ribosomal protein L4e D LRC145 rpl7ae; 50S ribosomal protein L7AE K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D RCIX1996 rpl10e; 50S ribosomal protein L10E K02866 RP-L10e; large subunit ribosomal protein L10e D RCIX2117 rpl15e; 50S ribosomal protein L15E K02877 RP-L15e; large subunit ribosomal protein L15e D LRC407 rpl18e; 50S ribosomal protein L18E K02883 RP-L18e; large subunit ribosomal protein L18e D RCIX2564 rpl19e; 50S ribosomal protein L19E K02885 RP-L19e; large subunit ribosomal protein L19e D RCIX2349 rpl21e; 50S ribosomal protein L21E K02889 RP-L21e; large subunit ribosomal protein L21e D LRC359 rpl30e; 50S ribosomal protein L30E K02908 RP-L30e; large subunit ribosomal protein L30e D RCIX1043 rpl31e; 50S ribosomal protein L31E K02910 RP-L31e; large subunit ribosomal protein L31e D RCIX2563 rpl32e; putative 50S ribosomal protein L32E K02912 RP-L32e; large subunit ribosomal protein L32e D RCIX2126 rpl37ae; 50S ribosomal protein L37AE K02921 RP-L37Ae; large subunit ribosomal protein L37Ae D RCIX1433 rpl40e; 50S ribosomal protein L40E K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D LRC297 rpl44e; 50S ribosomal protein L44E K02929 RP-L44e; large subunit ribosomal protein L44e D LRC401 rps2p; 30S ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D RCIX2548 rps3p; 30S ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D RCIX2581 rps4p; 30S ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D RCIX2566 rps5p; 30S ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D LRC363 rps7p; 30S ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D RCIX2561 rps8p; 30S ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D LRC405 rps9p; 30S ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D LRC366 rps10p; 30S ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D RCIX2582 rps11p; 30S ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D LRC361 rps12p; 30S ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D RCIX2580 rps13p; putative 30S ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D RCIX2559 rps14p; 30S ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D LRC56 rps15p; 30S ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D RCIX2553 rps17p; 30S ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D RCIX2545 rps19p; 30S ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D LRC26 rpl1p; 50S ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D RCIX2544 rpl2p; 50S ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D RCIX2540 rpl3p; 50S ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D RCIX2558 rpl5p; 50S ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D RCIX2562 rpl6p; 50S ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D LRC25 rpl10e; 50S ribosomal protein L10E K02864 RP-L10; large subunit ribosomal protein L10 D LRC27 rpl11p; 50S ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D LRC406 rpl13p; 50S ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D RCIX2554 rpl14p; 50S ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D RCIX2568 rpl15p; 50S ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D RCIX2565 rpl18p; 50S ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D RCIX2546 rpl22p; 50S ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D RCIX2543 rpl23p; 50S ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D RCIX2556 rpl24p; 50S ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D RCIX2549 rpl29p; 50S ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D RCIX2567 rpl30p; 50S ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D LRC24 rpl12p; putative 50S ribosomal protein L12P K02869 RP-L12; large subunit ribosomal protein L12 D RCIX1041 rplX; 50S ribosomal protein LX K02944 RP-LX; large subunit ribosomal protein LX D 5S_rRNA-1 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D 5S_rRNA-3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D 5S_rRNA-2 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D 16S_rRNA-1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 16S_rRNA-3 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 16S_rRNA-2 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 23S_rRNA-1 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-3 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:rci03009] D LRC385 flpA; fibrillarin-like pre-rRNA processing protein K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-] D LRC386 Nop56-like pre-mRNA processing protein K14564 NOP56; nucleolar protein 56 D RCIX2575 truB; putative tRNA pseudouridine synthase B K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D LRC289 conserved hypothetical protein K06961 KRR1; ribosomal RNA assembly protein D LRC287 putative serine/threonine protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] D RRC337 predicted protein kinase K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1] D RCIX2459 adk-1; putative adenylate kinase K18532 AK6; adenylate kinase [EC:2.7.4.3] D RCIX578 conserved hypothetical protein K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157] D RCIX1210 RNase L inhibitor K06174 ABCE1; ATP-binding cassette, sub-family E, member 1 D RCIX1018 conserved hypothetical GTP-binding protein K06943 NOG1; nucleolar GTP-binding protein D RCIX2552 rnp1; putative RNase P, component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D RCIX2120 rnp2; putative RNase P, component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D RCIX2119 rnp3; putative RNase P, component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D RRC355 conserved hypothetical protein K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] D RCIX1042 eif6; translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D RCIX1354 predicted nonsense mediated mRNA decay protein K07562 NMD3; 60S ribosomal export protein NMD3 D RCIX2122 conserved hypothetical protein K14574 SDO1; ribosome maturation protein SDO1 D RCIX691 cdc48-2; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX685 cdc48-1; putative cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX1130 cdc48-3; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D LRC159 conserved hypothetical protein K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 D RCIX1862 conserved GTP-binding protein (Ras family) K03595 era; GTPase D LRC145 rpl7ae; 50S ribosomal protein L7AE K02936 RP-L7Ae; large subunit ribosomal protein L7Ae D RCIX2110 conserved hypothetical protein K07569 gar1; RNA-binding protein D LRC360 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA D RCIX2352 ksgA; putative dimethyladenosine rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D RCIX61 putative ribosomal RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D RCIX2745 ftsJ; 23S rRNA methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D RCIX281 predicted acetyltransferase (GNAT family) K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D RCIX39 putative acetyltransferase (GNAT family) K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D RCIX845 putative acetyltransferase (GNAT family) K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] D LRC345 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RRC430 ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D RCIX961 putative GTPase (EngC family) K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D RCIX2332 conserved GTP-binding protein K03665 hflX; GTPase D RCIX2453 putative translation factor (YrdC family) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RCIX2671 conserved hypothetical protein K07574 yhbY; RNA-binding protein D RCIX2622 conserved GTP-binding protein K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:rci03016] D RCIX2552 rnp1; putative RNase P, component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D RCIX2120 rnp2; putative RNase P, component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D RCIX2119 rnp3; putative RNase P, component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D RCIX609 rnp4; putative RNase P, component 4 K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5] D RCIX719 rnz; RNase Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D LRC484 conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] D LRC485 conserved hypothetical protein K24956 ZBTB8OS; protein archease D LRC365 tuf-1; translation elongation factor 1, alpha subunit K03231 EEF1A; elongation factor 1-alpha D RCIX2739 conserved GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D LRC306 gluS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RRC469 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D RCIX379 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D RCIX858 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RRC417 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D RCIX568 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RCIX939 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RRC497 alanyl-tRNS synthetase-related protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D RCIX1877 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D RCIX1267 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RCIX1693 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D LRC224 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D RRC371 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D LRC303 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D LRC67 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D RRC220 pheS; phenylalanyl-tRNA synthetase, alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D RRC225 pheT; phenylalanyl-tRNA synthetase, beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D RCIX2415 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RRC219 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D RCIX2058 miaB; putative 2-methylthioadenine synthetase K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5] D RCIX2707 trm1; N(2),N(2)-dimethylguanosine tRNA methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] D RCIX1287 conserved hypothetical protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RRC515 putative SAM-dependent methyltransferase K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D RCIX1025 pimT; putative tRNA (1-methyladenosine) methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D RCIX1620 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D RRC421 predicted redox-active protein (CxxC motives) K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44] D RCIX1355 conserved hypothetical protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114] D RCIX2227 truA; tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D RCIX2712 truD; putative tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27] D RCIX2348 conserved hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25] D RCIX1570 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX1562 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX2234 gcp-b; O-sialoglycoprotein endopeptidase, C-terminal fragment K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1] D RCIX2232 gcp-a; O-sialoglycoprotein endopeptidase, N-terminal fragment K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] D RRC19 hat; histone acetyltransferase K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311] D RCIX2453 putative translation factor (YrdC family) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D RCIX455 conserved hypothetical protein K10761 THG1; tRNA(His) guanylyltransferase [EC:2.7.7.79] D RCIX1175 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] D RRC215 endA; tRNA-splicing endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16] D RCIX1176 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D RCIX2148 kptA; putative RNA 2\'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-] D RCIX1106 lysS; lysyl-tRNA synthetase (lysine--tRNA ligase) (LysRS) K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D RCIX42 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D RRC273 conserved PheS-like protein K07587 sepRS; O-phosphoseryl-tRNA synthetase [EC:6.1.1.27] D RCIX2270 conserved hypothetical protein K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] D RCIX1553 predicted archaea-specific pyridoxal phosphate-dependent enzyme K06868 sepcysS; Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73] D RCIX2178 predicted SAM-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-] D RCIX2338 conserved hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257] D LRC157 putative tRNA/rRNA cytosine-C5-methylase (Nop2/Sun family) K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-] D RCIX1177 putative RNA methyltransferase K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256] D RCIX421 trmL; N2-methylguanosine tRNA methyltransferase K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] D LRC271 conserved hypothetical protein K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206] D RCIX574 conserved hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121 D RCIX2128 conserved hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1 D RCIX36 exsB; succinoglycan biosynthesis regulator K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D RCIX32 ptpS; putative 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D RCIX33 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D RCIX1816 4Fe-4S ferredoxin-domain protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D RCIX81 4Fe-4S ferredoxin-domain protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D RCIX2688 tgt-2; archaeosine tRNA-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48] D RCIX1548 thiI-2; putative thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RCIX732 thiI-1; putative thiamine biosynthesis ATP pyrophosphatase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4] D RCIX1429 conserved hypothetical protein K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22] D RCIX2731 rnb; putative exoribonuclease II K12573 rnr; ribonuclease R [EC:3.1.13.1] C 03012 Translation factors [BR:rci03012] D NRC12 eif1a-2; translation initiation factor 1A K03236 EIF1A; translation initiation factor 1A D LRC350 eif1a-1; translation initiation factor 1A K03236 EIF1A; translation initiation factor 1A D RCIX1091 eif1a-3; translation initiation factor 1A K03236 EIF1A; translation initiation factor 1A D RCIX2550 translation initiation factor (SUI1 family) K03113 EIF1; translation initiation factor 1 D RRC313 translation initiation factor (SUI1 family) K03113 EIF1; translation initiation factor 1 D LRC294 eif2a; translation initiation factor 2, alpha subunit K03237 EIF2S1; translation initiation factor 2 subunit 1 D RCIX2244 eif2b-2; translation initiation factor 2, beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D RCIX1995 eif2b-1; translation initiation factor 2, beta subunit K03238 EIF2S2; translation initiation factor 2 subunit 2 D RCIX2020 eif2g; translation initiation factor 2, gamma subunit K03242 EIF2S3; translation initiation factor 2 subunit 3 D LRC52 eif5a; translation initiation factor 5A K03263 EIF5A; translation initiation factor 5A D LRC142 aif2; translation initiation factor 2 K03243 EIF5B; translation initiation factor 5B D RCIX1042 eif6; translation initiation factor 6 K03264 EIF6; translation initiation factor 6 D LRC365 tuf-1; translation elongation factor 1, alpha subunit K03231 EEF1A; elongation factor 1-alpha D RCIX2739 conserved GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D RCIX1379 ef1b; translation elongation factor 1, beta subunit K03232 EEF1B; elongation factor 1-beta D LRC364 fusA; translation elongation factor 2 K03234 EEF2; elongation factor 2 D RRC214 dph2; putative diphthamide synthesis protein K07561 DPH1; 2-(3-amino-3-carboxypropyl)histidine synthase [EC:2.5.1.108] D RRC12 conserved hypothetical protein K06927 DPH6; diphthine-ammonia ligase [EC:6.3.1.14] D RCIX567 erf1; translation termination factor K03265 ETF1; peptide chain release factor subunit 1 D RCIX2353 protoporphyrinogen oxidase-related protein (HemK-like) K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D RCIX2710 pth; peptidyl-tRNA hydrolase K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] C 03110 Chaperones and folding catalysts [BR:rci03110] D LRC471 dnaK; chaperonin Hsp70 K04043 dnaK; molecular chaperone DnaK D RCIX1971 hsp60-2; chaperonin Hsp60 (GroEL-like) K22447 cct; archaeal chaperonin D RM7 hsp60-4; chaperonin Hsp60 (GroEL-like) K22447 cct; archaeal chaperonin D RCIX2097 hsp60-3; chaperonin Hsp60 (GroEL-like) K22447 cct; archaeal chaperonin D LRC245 hsp60-1; chaperonin Hsp60 (GroEL-like) K22447 cct; archaeal chaperonin D LRC468 dnaJ; chaperonin Hsp40 K03686 dnaJ; molecular chaperone DnaJ D RCIX1138 predicted protein interacting with DnaK (DnaJ-like) K03686 dnaJ; molecular chaperone DnaJ D LRC472 grpE; DnaK co-chaperonin (Hsp70 cofactor) K03687 GRPE; molecular chaperone GrpE D RCIX1977 hypothetical protein K03687 GRPE; molecular chaperone GrpE D RCIX298 hsp20-1; chaperonin Hsp20 K13993 HSP20; HSP20 family protein D RCIX1409 hsp20-3; chaperonin Hsp20 K13993 HSP20; HSP20 family protein D RCIX687 hsp20-2; chaperonin Hsp20 K13993 HSP20; HSP20 family protein D RCIX1040 pfdA; putative chaperonin cofactor prefoldin, alpha subunit K04797 pfdA; prefoldin alpha subunit D RCIX2129 pfdB; chaperonin cofactor prefoldin, beta subunit K04798 pfdB; prefoldin beta subunit D RCIX1595 putative trypsin-like protease K04771 degP; serine protease Do [EC:3.4.21.107] D RCIX523 hypA; hydrogenase expression/formation protein (maturation factor) K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D RCIX2114 hypB; hydrogenase expression/formation protein (maturation factor) K04652 hypB; hydrogenase nickel incorporation protein HypB D RCIX757 ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin type) K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D LRC433 ppi-1; peptidyl-prolyl cis-trans isomerase (FKBP-type) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] D RCIX1080 trxA-2; thioredoxin K03671 TXN; thioredoxin D RCIX1079 trxA-1; thioredoxin K03671 TXN; thioredoxin D RCIX360 thioredoxin-like protein K03671 TXN; thioredoxin D RRC231 glutaredoxin-like protein K03676 grxC; glutaredoxin 3 C 04131 Membrane trafficking [BR:rci04131] D LRC143 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D RCIX691 cdc48-2; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX685 cdc48-1; putative cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX1130 cdc48-3; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D LRC29 secE; putative preprotein translocase, subunit E K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D LRC283 pyk; pyruvate kinase (pyruvate phosphotransferase) K00873 PK; pyruvate kinase [EC:2.7.1.40] D LRC365 tuf-1; translation elongation factor 1, alpha subunit K03231 EEF1A; elongation factor 1-alpha D RCIX2739 conserved GTP-binding protein K03231 EEF1A; elongation factor 1-alpha C 04121 Ubiquitin system [BR:rci04121] D RCIX1433 rpl40e; 50S ribosomal protein L40E K02927 RP-L40e; ubiquitin-large subunit ribosomal protein L40e D RCIX627 rps27ae; 30S ribosomal protein S27AE K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae C 03051 Proteasome [BR:rci03051] D RCIX2121 psmA; 20S proteasome, alpha subunit K03432 psmA; proteasome alpha subunit [EC:3.4.25.1] D RCIX2364 psmB; 20S proteasome, beta subunit K03433 psmB; proteasome beta subunit [EC:3.4.25.1] D RCIX2455 pan-2; 26s proteasome, regulatory subunit (proteasome-activating nucleotidase) K03420 psmR; proteasome regulatory subunit D RCIX1184 pan-1; 26S proteasome regulatory subunit (proteasome-activating nucleotidase) K03420 psmR; proteasome regulatory subunit C 03032 DNA replication proteins [BR:rci03032] D RCIX2511 hypothetical protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D RCIX2293 pcn; putative DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen D RCIX607 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RRC227 lig; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D RCIX2529 dcm; C-5 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RCIX2575 truB; putative tRNA pseudouridine synthase B K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-] D RCIX283 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D RCIX1117 cdc6-1; cell division cycle protein 6 K10725 cdc6A; archaeal cell division control protein 6 D RCIX1846 cdc6-2; cell division cycle protein 6 K10725 cdc6A; archaeal cell division control protein 6 D RCIX2243 mcm; putative DNA replication licensing factor K10726 mcm; replicative DNA helicase Mcm [EC:5.6.2.3] D LRC299 priA; DNA primase, small subunit K02683 priS; DNA primase small subunit [EC:2.7.7.102] D RCIX2295 priB; DNA primase, large subunit K18882 priL; DNA primase large subunit D LRC298 hypothetical protein K09723 ginS; DNA replication factor GINS D RCIX928 rnh; ribonuclease H (RNase H) K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D RRC383 polB-4; DNA-directed DNA polymerase B K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D RCIX2734 polB-3; putative DNA-directed DNA polymerase B K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D LRC154 polB-1; DNA-directed DNA polymerase B K02319 pol; DNA polymerase, archaea type [EC:2.7.7.7] D RCIX896 pol2b; DNA-directed DNA polymerase D, large subunit K02322 polC; DNA polymerase II large subunit [EC:2.7.7.7] D RCIX1121 pol2a; DNA-directed DNA polymerase D, small subunit K02323 polB; DNA polymerase II small subunit [EC:2.7.7.7] D RCIX1805 rfcL; replication factor C, large subunit K04800 rfcL; replication factor C large subunit D LRC39 rfcS; replication factor C (clamp loader), small subunit K04801 rfcS; replication factor C small subunit D LRC316 dam; N6 adenine-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D RCIX58 gyrA; type II DNA topoisomerase II (gyrase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RCIX59 gyrB; type II DNA topoisomerase II (gyrase), subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D LRC137 top6A-1; type II DNA topoisomerase VI, subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D RCIX1077 top6A-2; type II DNA topoisomerase VI, subunit A K03166 top6A; DNA topoisomerase VI subunit A [EC:5.6.2.2] D LRC138 top6B-1; type II DNA topoisomerase VI, subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D RCIX1075 top6B-2; type II DNA topoisomerase VI, subunit B K03167 top6B; DNA topoisomerase VI subunit B [EC:5.6.2.2] D RCIX2309 topA-1; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RCIX2432 topA-2; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:rci03036] D RCIX2529 dcm; C-5 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RCIX2328 hmfA; archaeal histone A K24450 hmf; DNA-binding protein D RRC234 transcription regulator (AsnC/Lrp family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RRC47 putative transcriptional regulator (AsnC/Lrp family) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RCIX2259 smc; chromosome segregation/partition protein K03529 smc; chromosome segregation protein D RCIX2257 scpA; putative chromosome segregation/condensation protein A K05896 scpA; segregation and condensation protein A D RCIX2256 scpB; putative chromosome segregation/condensation protein B K06024 scpB; segregation and condensation protein B D LRC30 ftsZ-3; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D LRC17 ftsZ-2; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D RCIX2758 ftsZ-1; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D RCIX1255 putative ATPase involved in chromosome partitioning K03609 minD; septum site-determining protein MinD D RCIX468 putative chromosome partitioning ATPase (MinD family) K03609 minD; septum site-determining protein MinD D RCIX1458 parB; putative chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RRC221 integrase K04763 xerD; integrase/recombinase XerD D RRC132 integrase K04763 xerD; integrase/recombinase XerD D RCIX2187 integrase K04763 xerD; integrase/recombinase XerD D LRC526 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning D RCIX1520 predicted cell division protein (Fic family) K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] C 03400 DNA repair and recombination proteins [BR:rci03400] D RCIA88 predicted 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RCIX1098 mpg; putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D RCIX2536 putative DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D RRC63 predicted endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RCIX927 predicted endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D RCIX2293 pcn; putative DNA polymerase sliding clamp (proliferating cell nuclear antigen) K04802 PCNA; proliferating cell nuclear antigen D RCIX607 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RRC227 lig; ATP-dependent DNA ligase K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] D RCIX2277 repD; putative ATP-dependent DNA-repair helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RCIX2394 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D LRC132 conserved hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-] D RCIX2092 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D LRC494 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RCIX1986 dut; putative dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RRC526 predicted uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D RCIX276 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D RCIX1223 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RCIX2501 predicted endonuclease/exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RRC305 nfo; putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D LRC22 hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RRC272 nfi; putative endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RCIX2741 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2021 putative phosphoesterase K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RCIX2102 recJ; putative single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D LRC57 putative single-stranded DNA-specific exonuclease (RecJ-like) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D RRC360 uvrA-2; excinuclease ABC, ATPase subunit K03701 uvrA; excinuclease ABC subunit A D LRC310 pcrA; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D LRC5 mutSb; putative DNA mismatch repair protein, N-terminal fragment K07456 mutS2; DNA mismatch repair protein MutS2 D LRC6 mutSa; putative DNA mismatch repair protein, C-terminal fragment K07456 mutS2; DNA mismatch repair protein MutS2 D LRC316 dam; N6 adenine-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D RCIX2629 ruvA; holliday junction resolvasome, DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA D RCIX2631 ruvB; holliday junction resolvasome, helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D RCIX2628 ruvC; holliday junction resolvasome, endonuclease subunit K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RRC96 predicted DNA repair ATPase (Rad50-like) K03546 sbcC; DNA repair protein SbcC/Rad50 D RRC95 predicted DNA repair exonuclease (Rad32/Mre11-like) K03547 sbcD; DNA repair protein SbcD/Mre11 D RCIX12 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D RCIX1153 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D RCIX978 radA; DNA repair/recombination protein A K04483 radA; DNA repair protein RadA D RCIX702 radB; DNA repair/recombination protein B K04484 radB; DNA repair protein RadB D RCIX575 putative ski2-type helicase K03726 helS; ATP-dependent DNA helicase [EC:5.6.2.4] D RCIX1966 conserved hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D RCIX58 gyrA; type II DNA topoisomerase II (gyrase), subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D RCIX59 gyrB; type II DNA topoisomerase II (gyrase), subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D RCIX2309 topA-1; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RCIX2432 topA-2; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D RCIX1772 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RCIX2412 hypothetical protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D RCIX1179 polX; DNA-directed DNA polymerase X K02347 polX; DNA polymerase (family X) D RCIX869 Lhr-like RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D RCIX231 ATP-dependent RNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D RCIX529 conserved hypothetical protein K22585 nreA; DNA repair protein NreA D RRC440 conserved hypothetical protein K22585 nreA; DNA repair protein NreA C 03029 Mitochondrial biogenesis [BR:rci03029] D RCIX2552 rnp1; putative RNase P, component 1 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5] D RCIX2120 rnp2; putative RNase P, component 2 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5] D RCIX2119 rnp3; putative RNase P, component 3 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5] D RCIX1862 conserved GTP-binding protein (Ras family) K03595 era; GTPase D RCIX2415 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D RCIX858 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D RCIX1267 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D RCIX568 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D RCIX2430 gatA; glutamyl-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D RCIX2431 gatB-1; glutamyl-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D RCIX2429 gatC; glutamyl-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D LRC471 dnaK; chaperonin Hsp70 K04043 dnaK; molecular chaperone DnaK D LRC472 grpE; DnaK co-chaperonin (Hsp70 cofactor) K03687 GRPE; molecular chaperone GrpE D RCIX1977 hypothetical protein K03687 GRPE; molecular chaperone GrpE D LRC468 dnaJ; chaperonin Hsp40 K03686 dnaJ; molecular chaperone DnaJ D RCIX1138 predicted protein interacting with DnaK (DnaJ-like) K03686 dnaJ; molecular chaperone DnaJ D RCIX1570 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX1562 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D LRC526 conserved hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:rci02000] D RCIX1621 modA; ABC-type molybdenum import system, periplasmic component K02020 modA; molybdate transport system substrate-binding protein D RCIX1623 modB; ABC-type molybdenum import system, permease component K02018 modB; molybdate transport system permease protein D RCIX1625 modC; putative ABC-type molybdenum import system,ATPase component, N-terminal fragment K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D LRC334 ABC-type transport system, permease component K05772 tupA; tungstate transport system substrate-binding protein D RCIX664 ABC-type transport system, permease component K05773 tupB; tungstate transport system permease protein D RCIX666 ABC-type transport system, ATPase component K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D RCIX447 ssuA; putative ABC-type sulfonate import system,periplasmic component K15553 ssuA; sulfonate transport system substrate-binding protein D RCIX445 ssuC; putative ABC-type sulfonate import system,permease component K15554 ssuC; sulfonate transport system permease protein D RCIX444 ssuB; putative ABC-type sulfonate import system, ATPase component K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D RCIX1565 predicted ABC-type sulfonate transport system,periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D RCIX2132 predicted ABC-type transport system, permease component K02069 STAR2; UDP-glucose/iron transport system permease protein D RCIX2133 ABC-type transport system, ATPase component K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D RCIX2749 pstS; high-affinity phosphate ABC-type import system,periplasmic component K02040 pstS; phosphate transport system substrate-binding protein D RCIX2751 pstC; high-affinity phosphate ABC-type import system,permease component 2 K02037 pstC; phosphate transport system permease protein D RCIX2753 pstA; high-affinity phosphate ABC-type import system,permease component 1 K02038 pstA; phosphate transport system permease protein D RCIX2754 pstB; high-affinity phosphate ABC-type import system,ATPase component K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D RCIX143 gluH; ABC-type glutamate import system, periplasmic component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D RCIX145 gluP; ABC-type glutamate import system, permease component K02029 ABC.PA.P; polar amino acid transport system permease protein D RCIX147 gluQ; ABC-type glutamate import system, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D LRC377 putative ABC-type peptide transport system,periplasmic component K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D LRC378 putative ABC-type peptide transport system,permease component 1 K02033 ABC.PE.P; peptide/nickel transport system permease protein D LRC379 putative ABC-type peptide transport system,permease component 2 K02034 ABC.PE.P1; peptide/nickel transport system permease protein D LRC380 putative ABC-type peptide transport system,ATPase component 1 K02031 ddpD; peptide/nickel transport system ATP-binding protein D LRC381 putative ABC-type peptide transport system,ATPase component 2 K02032 ddpF; peptide/nickel transport system ATP-binding protein D RCIX2660 ABC-type transport system, periplasmic component K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D RCIX2659 ABC-type transport system, permease component K02015 ABC.FEV.P; iron complex transport system permease protein D RCIX2658 ABC-type transport system, ATPase component K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D RCIX829 ABC-type transport system, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein D RRC301 putative ABC-type transport system, permease component K25027 btuC; cobalamin transport system permease protein D RRC303 ABC-type transport system, ATPase component K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D RRC171 cbiM-1b; cobalamin biosynthesis protein, C-terminal fragment K02009 cbiN; cobalt/nickel transport protein D RRC176 cbiQ-1; putative ABC-type cobalt import system, permease component K02008 cbiQ; cobalt/nickel transport system permease protein D LRC577 putative ABC-type cobalt transport system,permease coponent K02008 cbiQ; cobalt/nickel transport system permease protein D RRC172 cbiM-1a; cobalamin biosynthesis protein, N-terminal fragment K02007 cbiM; cobalt/nickel transport system permease protein D LRC579 cbiM-2; putative cobalamin biosyntheis protein M K02007 cbiM; cobalt/nickel transport system permease protein D RRC174 cbiO-1; putative ABC-type cobalt import system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RCIX1775 ABC-type transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D LRC578 putative ABC-type cobalt transport system, ATPase component K02006 cbiO; cobalt/nickel transport system ATP-binding protein D RCIX1763 bioY; biotin synthesis protein Y K03523 bioY; biotin transport system substrate-specific component D RCIX1768 cbiQ-3; putative ABC-type cobalt import system, permease component K16785 ecfT; energy-coupling factor transport system permease protein D LRC327 cbiQ-2; putative ABC-type cobalt import system, permease component K16785 ecfT; energy-coupling factor transport system permease protein D RCIX1764 cbiO-3; putative ABC-type cobalt import system, ATPase component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RCIX1766 cbiO-4; putative ABC-type cobalt import system, ATPase component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D LRC326 cbiO-2; putative ABC-type cobalt import system, ATPase component K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D RCIX1000 predicted ABC-type transport system, periplasmic component K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D RCIX1001 putative ABC-type transport system, permease component (ABC-3 family) K02075 ABC.ZM.P; zinc/manganese transport system permease protein D RCIX1002 ABC-type transport system, ATPase component K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D RCIX217 putative ABC-type transport system, permease component (ABC-2 family) K09690 wzm; homopolymeric O-antigen transport system permease protein D RCIX216 putative ABC-type transport system, ATPase component K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D RCIX1830 ABC-type transport system, permease component (ABC-2 family) (NodJ-like) K09694 nodJ; lipooligosaccharide transport system permease protein D RCIX1829 ABC-type transport system, ATPase component K09695 nodI; lipooligosaccharide transport system ATP-binding protein D RCIX2242 ABC-type transport system, permease component K25147 berB; beta-exotoxin I transport system permease protein D RCIX2241 ABC-type transport system, ATPase component K25148 berA; beta-exotoxin I transport system ATP-binding protein D RCIX1071 conserved hypothetical protein K16905 K16905; fluoroquinolone transport system permease protein D RCIX1070 conserved hypothetical protein K16906 K16906; fluoroquinolone transport system permease protein D RCIX1069 ABC-type transport system, ATPase component K16907 K16907; fluoroquinolone transport system ATP-binding protein [EC:7.6.2.-] D LRC215 putative ABC-type transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D LRC209 predicted ABC-type transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX1725 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX783 predicted ABC-type transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX788 putative ABC-type transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D LRC321 ABC-type multidrug transport system, permease component (ABC-2 family) K01992 ABC-2.P; ABC-2 type transport system permease protein D RRC83 ABC-type transport system, permease component (ABC-2 family) K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX1583 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX1416 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX1414 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX1338 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX937 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX936 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX805 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX494 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX87 putative ABC-type transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX50 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX493 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX1581 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RRC70 predicted ABC-type transport system, permease component K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX817 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX815 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX806 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX1337 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D LRC127 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D LRC125 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D RCIX2599 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LRC212 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX89 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX51 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RRC72 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX1727 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX1411 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX802 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX787 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX1899 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RRC81 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LRC208 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D LRC320 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RRC164 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX782 ABC-type transport system, ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D RCIX2314 ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RCIX1298 predicted ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RCIX1296 predicted ABC-type transport system, permease component K02004 ABC.CD.P; putative ABC transport system permease protein D RCIX1294 ABC-type transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RCIX2315 ABC-type transport system, ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D RCIX1574 putative Fe-S cluster assembly protein (SufC-like) K09013 sufC; Fe-S cluster assembly ATP-binding protein D RRC10 permease (major facilitator superfamily) K08155 SLC18A1_2; MFS transporter, DHA1 family, solute carrier family 18 (vesicular amine transporter), member 1/2 D RRC507 putative permease (major facilitator superfamily) K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D RCIX653 putative permease (major facilitator superfamily) K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein D RCIX715 putative permease (major facilitator superfamily) K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D RCIX712 putative permease (major facilitator superfamily) K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D RRC514 aqpM; putative aquaporin K02440 glpF; glycerol uptake facilitator D RCIX2727 predicted voltage-dependent K(+) channel K10716 kch; voltage-gated potassium channel D RRC432 amt; ammonium antiporter K03320 amt; ammonium transporter, Amt family D RCIX2379 fdhC; putative formate transporter K21993 fdhC; formate transporter D RCIX2683 mscL; large-conductance mechanosensitive ion channel K03282 mscL; large conductance mechanosensitive channel D RRC391 mscS-4; putative small-conductance mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D LRC408 mscS-1; putative small-conductance mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel D RRC528 mscS-5; putative small-conductance mechanosensitive ion channel K16052 ynaI; MscS family membrane protein D RCIX1870 mscS-3; putative small-conductance mechanosensitive ion channel K16052 ynaI; MscS family membrane protein D RCIX998 mgtE; Mg(2+) transporter K06213 mgtE; magnesium transporter D LRC110 predicted cation transporter K06213 mgtE; magnesium transporter D RCIX153 corA; Mg(2+) and Co(2+) transporter K03284 corA; magnesium transporter D RRC285 hypothetical protein K03284 corA; magnesium transporter D RRC275 crcB-1; putative camphor resistance protein K06199 crcB; fluoride exporter D RRC276 crcB-2; putative camphor resistance protein K06199 crcB; fluoride exporter D RCIX1155 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D RCIX322 conserved hypothetical protein K07238 TC.ZIP; zinc transporter, ZIP family D RRC320 lldP-3; putative L-lactate permease K03303 lutP; lactate permease D RCIX2235 putative Na(+)/Ca(2+) antiporter K07301 yrbG; cation:H+ antiporter D LRC341 putative sodium/calcium antiporter K07301 yrbG; cation:H+ antiporter D RCIX136 actP; putative acetate permease (Na(+)/solute symporter family) K14393 actP; cation/acetate symporter D RRC459 putative Na(+)/H(+) antiporter K11105 cvrA; potassium/hydrogen antiporter D RRC456 putative Na(+)/H(+) antiporter K03316 nhaP; Na+:H+ antiporter D RRC462 putative Na(+)/H(+) antiporter K26735 KEA4_5_6; K+:H+ antiporter D RRC61 predicted glutathione-regulated K(+) efflux system protein K26735 KEA4_5_6; K+:H+ antiporter D RRC455 putative Na(+)/H(+) antiporter K26730 napA; Na+:H+ antiporter D RCIX163 putative K(+) uptake system, membrane component K03498 trkH; trk/ktr system potassium uptake protein D RRC145 putative K(+) uptake system, membrane component K03498 trkH; trk/ktr system potassium uptake protein D RRC457 putative K(+) uptake system, membrane component K03498 trkH; trk/ktr system potassium uptake protein D RCIX162 putative K(+) uptake system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D RRC458 putative K(+) uptake system, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein D RCIX2209 putative permease (xanthine/uracil/vitamin C family) K06901 pbuG; adenine/guanine/hypoxanthine permease D RCIX1703 putative Na(+)/phosphate symporter K03324 yjbB; phosphate:Na+ symporter D RRC475 putative transporter (arsenical pump membrane protein family) K03893 arsB; arsenical pump membrane protein D RCIX1647 arsB; arsenite efflux transporter K03325 ACR3; arsenite transporter D RCIX557 predicted oxidoreductase integral membrane component (CooM/NuoL-like) K05565 mnhA; multicomponent Na+:H+ antiporter subunit A D RRC386 conserved hypothetical protein K24180 mleP; malate permease and related proteins D LRC449 putative lysine exporter (LysE family) K06895 lysE; L-lysine exporter family protein LysE/ArgO D RCIX1839 putative multiple antibiotic resistance protein (MarC-related family) K05595 marC; multiple antibiotic resistance protein D RCIX1240 conserved integral membrane protein (MarC family) K05595 marC; multiple antibiotic resistance protein D RCIX2304 conserved hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein D LRC423 conserved hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein D RCIX317 ppa; membrane-bound H(+)-translocating inorganic pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D LRC228 putative cytochrome c biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D RCIX1347 feoB; Fe(II) import system, GTP-binding protein B K04759 feoB; ferrous iron transport protein B C 02044 Secretion system [BR:rci02044] D LRC514 flaB-1; putative flagellin precursor K07325 flaB; archaeal flagellin FlaB D LRC515 flaB-2; putative flagellin precursor K07325 flaB; archaeal flagellin FlaB D LRC500 conserved hypothetical protein K07329 flaF; archaeal flagellar protein FlaF D LRC501 conserved hypothetical protein K07329 flaF; archaeal flagellar protein FlaF D LRC505 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC509 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC507 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC506 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC499 conserved hypothetical protein K07331 flaH; archaeal flagellar protein FlaH D RCIX113 gsp-5; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D LRC498 gsp-2; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX2217 gsp-10; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX949 gsp-8; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX637 gsp-6; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX2216 gsp-9; putative bacterial type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D RCIX112 gsp-4; putative bacterial type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D LRC497 gsp-1; putative bacterial type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D RCIX640 gsp-7b; putative bacterial type II secretion system protein, C-terminal fragment K07333 flaJ; archaeal flagellar protein FlaJ D RCIX2250 predicted peptidase (A24 family) K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] D RCIX305 dCMP deaminase K01493 comEB; dCMP deaminase [EC:3.5.4.12] D RCIX2398 predicted metallo-beta-lactamase (ComE-like) K02238 comEC; competence protein ComEC D RCIX1306 predicted protein secretion system (SecD/SecF family) K03072 secD; preprotein translocase subunit SecD D RCIX1307 predicted protein secretion system (SecD/SecF family) K03074 secF; preprotein translocase subunit SecF D RCIX2569 secY; protein translocase, subunit Y K03076 secY; preprotein translocase subunit SecY D RCIX2337 srp54; signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D RCIX1038 ftsY; putative signal recognition particle K03110 ftsY; fused signal recognition particle receptor D LRC29 secE; putative preprotein translocase, subunit E K07342 SEC61G; protein transport protein SEC61 subunit gamma and related proteins D RCIX2112 srp19; signal recognition particle K03105 SRP19; signal recognition particle subunit SRP19 D RCIX1503 tatA; sec-independent protein translocase (twin-arginine translocation protein) K03116 tatA; sec-independent protein translocase protein TatA D LRC383 putative sec-independent protein translocase (TatA-like) K03116 tatA; sec-independent protein translocase protein TatA D RCIX1260 tatC-2; sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC D RCIX879 tatC-1; putative sec-independent periplasmic protein translocase K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:rci02042] D RCIX1155 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family C 02022 Two-component system [BR:rci02022] D RCIX443 putative response regulator (CheY-like) K07668 vicR; two-component system, OmpR family, response regulator VicR D LRC571 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D LRC569 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RRC476 putative response regulator (CheY-like) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RCIX2509 predicted response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D LRC570 cheB; chemotaxis methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D RRC477 putative signal transduction histidine kinase K20974 K20974; two-component system, sensor histidine kinase [EC:2.7.13.3] D LRC113 predicted signal transduction histidine kinase K19694 chiS; two-component system, sensor histidine kinase ChiS C 02035 Bacterial motility proteins [BR:rci02035] D LRC571 cheA; chemotaxis histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D RCIX655 cheW; chemotaxis signal transducer K03408 cheW; purine-binding chemotaxis protein CheW D RCIX2603 predicted chemotaxis protein (CheW/CheC-like) K03410 cheC; chemotaxis protein CheC D LRC572 cheC; chemotaxis MCP methylation-inhibitor K03410 cheC; chemotaxis protein CheC D LRC573 cheD; chemotaxis MCP methylation-stimulator K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D LRC584 cheR; chemotaxis MCP methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D LRC570 cheB; chemotaxis methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D LRC569 cheY; chemotaxis response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RRC476 putative response regulator (CheY-like) K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RCIX2509 predicted response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D RCIX1656 putative signal transduction histidine kinase K03406 mcp; methyl-accepting chemotaxis protein D RCIX191 tlpC; chemotaxis signal transducer K03406 mcp; methyl-accepting chemotaxis protein D LRC514 flaB-1; putative flagellin precursor K07325 flaB; archaeal flagellin FlaB D LRC515 flaB-2; putative flagellin precursor K07325 flaB; archaeal flagellin FlaB D LRC500 conserved hypothetical protein K07329 flaF; archaeal flagellar protein FlaF D LRC501 conserved hypothetical protein K07329 flaF; archaeal flagellar protein FlaF D LRC505 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC509 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC507 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC506 conserved hypothetical protein K07330 flaG; archaeal flagellar protein FlaG D LRC499 conserved hypothetical protein K07331 flaH; archaeal flagellar protein FlaH D RCIX113 gsp-5; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D LRC498 gsp-2; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX2217 gsp-10; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX949 gsp-8; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX637 gsp-6; putative bacterial type II secretion system protein K07332 flaI; archaeal flagellar protein FlaI D RCIX2216 gsp-9; putative bacterial type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D RCIX112 gsp-4; putative bacterial type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D LRC497 gsp-1; putative bacterial type II secretion system protein K07333 flaJ; archaeal flagellar protein FlaJ D RCIX640 gsp-7b; putative bacterial type II secretion system protein, C-terminal fragment K07333 flaJ; archaeal flagellar protein FlaJ D RCIX2250 predicted peptidase (A24 family) K07991 flaK; archaeal preflagellin peptidase FlaK [EC:3.4.23.52] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:rci04812] D LRC400 conserved hypothetical protein K06990 MEMO1; MEMO1 family protein D LRC30 ftsZ-3; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D LRC17 ftsZ-2; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D RCIX2758 ftsZ-1; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D RCIX1255 putative ATPase involved in chromosome partitioning K03609 minD; septum site-determining protein MinD D RCIX468 putative chromosome partitioning ATPase (MinD family) K03609 minD; septum site-determining protein MinD D RCIX1458 parB; putative chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:rci04147] D LRC402 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D RCIX1778 pgk-1; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D RRC531 pgk-2; 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D LRC283 pyk; pyruvate kinase (pyruvate phosphotransferase) K00873 PK; pyruvate kinase [EC:2.7.1.40] D LRC46 prx1-2; 1-cysteine peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D LRC365 tuf-1; translation elongation factor 1, alpha subunit K03231 EEF1A; elongation factor 1-alpha D RCIX2739 conserved GTP-binding protein K03231 EEF1A; elongation factor 1-alpha D LRC364 fusA; translation elongation factor 2 K03234 EEF2; elongation factor 2 D LRC471 dnaK; chaperonin Hsp70 K04043 dnaK; molecular chaperone DnaK D RCIX607 fen; flap structure-specific endonuclease K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-] D RCIX683 guaB-1; inosine-5\'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D RCIX627 rps27ae; 30S ribosomal protein S27AE K02977 RP-S27Ae; ubiquitin-small subunit ribosomal protein S27Ae D RCIX691 cdc48-2; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX685 cdc48-1; putative cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX1130 cdc48-3; cell division cycle protein 48 K13525 VCP; transitional endoplasmic reticulum ATPase D RCIX150 paaJ; acetyl-CoA C-acetyltransferase (thiolase I) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D RRC46 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D RCIX2570 adk-2; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D RCIX1545 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D RCIX271 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D RCIX1377 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D RCIX942 glnA-2; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX649 glnA-1; glutamine synthetase I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D RCIX912 hemB; delta-aminolevulinic acid dehydratase (porphobilinogen synthase) K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D RCIX1538 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D RRC122 pdhD; pyruvate dehydrogenase complex E3,dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D RCIX770 tpi; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:rci02048] D RCIX12 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D RCIX1153 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D RCIX1154 cas2; predicted CRISPR-associated protein K09951 cas2; CRISPR-associated protein Cas2 D RCIX1147 cas3; putative CRISPR-associated helicase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D RCIX2449 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D RCIX1148 conserved hypothetical protein K19123 casA; CRISPR system Cascade subunit CasA D RCIX1149 conserved hypothetical protein K19046 casB; CRISPR system Cascade subunit CasB D RCIX1150 conserved hypothetical protein K19124 casC; CRISPR system Cascade subunit CasC D RCIX1151 conserved hypothetical protein K19125 casD; CRISPR system Cascade subunit CasD D RCIX1152 predicted CRISPR-associated protein K19126 casE; CRISPR system Cascade subunit CasE D RCIX971 hsdR-1; type I restriction modification enzyme,restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D RCIX1321 hsdR-2; type I restriction modification system,restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D RCIX972 hsdS-1; type I restriction modification system,specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RCIX974 hsdS-3; type I restriction modification system,specificity subunit (fragment) K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RCIX1320 hsdS-2; type I restriction modification system,specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D RCIX973 hsdM-1; type I restriction modification system,methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D RCIX1317 hsdM-2; type I restriction modification system,methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D LRC316 dam; N6 adenine-specific DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D LRC389 putative DNA methyltransferase K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D RCIX2529 dcm; C-5 cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RCIX2329 zim; N-4 cytosine-specific methyltransferase K24451 zim; modification methylase D RCIX2617 putative N6 adenine-specific DNA methyltransferase K24451 zim; modification methylase D LRC80 putative type III restriction-modification system, restriction subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D LRC82 putative type III restriction-modification system, methylation subunit K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D RCIX2735 hypothetical protein K07172 mazE; antitoxin MazE D LRC188 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4 D LRC73 predicted bacteriophage protein (death-on-curing protein family) K07341 doc; death on curing protein D LRC30 ftsZ-3; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D LRC17 ftsZ-2; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D RCIX2758 ftsZ-1; putative cell division GTPase Z K03531 ftsZ; cell division protein FtsZ D LRC306 gluS; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D RCIX2282 conserved hypothetical protein K07060 nob1; endoribonuclease Nob1 [EC:3.1.-.-] D RCIX1570 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D RCIX1562 class V aminotransferase (NifS-like) K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:rci04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:rci01504] D RCIX166 aacC; aminoglycoside N3\'-acetyltransferase K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81] D RCIX1356 hypothetical protein K18235 vgb; virginiamycin B lyase [EC:4.2.99.-] C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:rci03100] D tRNA-Ala-2 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Ala-1 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Ala-3 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Ala-4 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala D tRNA-Arg-1 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-2 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-3 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-4 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Arg-5 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg D tRNA-Asn tRNA-Asn; tRNA-Asn K14220 tRNA-Asn; tRNA Asn D tRNA-Asp tRNA-Asp; tRNA-Asp K14221 tRNA-Asp; tRNA Asp D tRNA-Cys-2 tRNA-Cys; tRNA-Cys K14222 tRNA-Cys; tRNA Cys D tRNA-Cys-1 tRNA-Cys; tRNA-Cys K14222 tRNA-Cys; tRNA Cys D tRNA-Gln-1 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Gln-2 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln D tRNA-Glu-2 tRNA-Glu; tRNA-Glu K14224 tRNA-Glu; tRNA Glu D tRNA-Glu-1 tRNA-Glu; tRNA-Glu K14224 tRNA-Glu; tRNA Glu D tRNA-Gly-1 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-2 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-3 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-Gly-4 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly D tRNA-His tRNA-His; tRNA-His K14226 tRNA-His; tRNA His D tRNA-Ile-1 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Ile-2 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile D tRNA-Leu-1 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-3 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-4 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-2 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Leu-5 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu D tRNA-Lys-1 tRNA-Lys; tRNA-Lys K14229 tRNA-Lys; tRNA Lys D tRNA-Lys-2 tRNA-Lys; tRNA-Lys K14229 tRNA-Lys; tRNA Lys D tRNA-Met-2 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-1 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Met-3 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met D tRNA-Phe tRNA-Phe; tRNA-Phe K14231 tRNA-Phe; tRNA Phe D tRNA-Pro-2 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Pro-1 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Pro-3 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro D tRNA-Ser-3 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-1 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-2 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Ser-4 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser D tRNA-Thr-3 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-4 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-2 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Thr-1 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr D tRNA-Trp tRNA-Trp; tRNA-Trp K14235 tRNA-Trp; tRNA Trp D tRNA-Tyr tRNA-Tyr; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D tRNA-Val-1 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val D tRNA-Val-2 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val D tRNA-Val-3 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val D 16S_rRNA-1 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 16S_rRNA-3 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 16S_rRNA-2 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D 23S_rRNA-1 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-3 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 23S_rRNA-2 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D 5S_rRNA-1 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D 5S_rRNA-3 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D 5S_rRNA-2 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D RCIX1923 idhA; putative myo-inositol 2-dehydrogenase K18855 E1.1.1.374; UDP-N-acetylglucosamine 3-dehydrogenase [EC:1.1.1.374] D RRC242 fgd-2; putative coenzyme F420-dependent glucose-6-phosphate dehydrogenase K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2] D RCIX1283 fgd-1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase K15510 fgd1; coenzyme F420-dependent glucose-6-phosphate dehydrogenase [EC:1.1.98.2] D RCIX2649 iorA-2; putative indolepyruvate:ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D RRC398 iorA-1; indolepyruvate:ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D RRC396 iorB; indolepyruvate:ferredoxin oxidoreductase, beta subunit K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D RCIX1208 putative coenzyme F420-dependent NADP reductase K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40] D RCIX501 ndh; putative NADH dehydrogenase K17870 nox1; NADH oxidase (H2O2-forming) [EC:1.6.3.3] D RCIX79 lpd; dihydrolipoamide dehydrogenase K17883 mtr; mycothione reductase [EC:1.8.1.15] D RRC232 trxB-1; NADPH:thioredoxin reductase (TrxR) K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-] D RRC241 msrA; peptide methionine sulfoxide reductase, domain A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D LRC347 msrB; peptide methionine sulfoxide reductase, domain B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D RCIX2444 bcp-4; peroxiredoxin-like bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RCIX402 bcp-1; putative peroxiredoxin-like bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D RCIX2514 prx2-2; 2-cysteine peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D RCIX2524 prx2-3; putative 2-cysteine peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D RCIX1144 prx2-1; 2-cysteine peroxiredoxin K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26] D RCIX483 [NiFe]-hydrogenase, small subunit (EchC-like) K18023 mbhJ; membrane-bound hydrogenase subunit mbhJ [EC:1.12.7.2] D RCIX882 vhtA; F420-nonreducing hydrogenase (membrane-bound),large subunit K14068 vhoA; methanophenazine hydrogenase, large subunit [EC:1.12.98.3] D RCIX885 vhtC; F420-nonreducing hydrogenase (membrane-bound),cytochrome b subunit K14069 vhoC; methanophenazine hydrogenase, cytochrome b subunit [EC:1.12.98.3] D RCIX880 vhtG; F420-nonreducing hydrogenase (membrane-bound),small subunit K14070 vhoG; methanophenazine hydrogenase [EC:1.12.98.3] D RRC466 conserved hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D RCIX2624 sor; rubredoxin superoxide reductase (1-Fe-SOR) K05919 dfx; superoxide reductase [EC:1.15.1.2] D RCIX1592 dfx; desulfoferrodoxin (2-Fe-SOR) K05919 dfx; superoxide reductase [EC:1.15.1.2] D RRC284 predicted oxidoreductase (cytochrome-c3 hydrogenase, gamma subunit family) K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D RCIX2253 pflA; putative pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RCIX706 nrdG; anaerobic ribonucleoside-triphosphate reductase (glycyl-dependent) activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D LRC104 pflX; putative pyruvate formate-lyase activating enzyme K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D RCIX2387 hydrogenase, membrane subunit 4-like protein (HycC-like) K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-] D RCIX2385 hydrogenase, membrane subunit 2-like protein K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-] D RCIX2384 hydrogenase, membrane subunit 1-like protein (EchA-like) K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-] D RCIX2158 pcm; putative protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D RRC519 dphB; putative diphthine synthase K20215 dph5; diphthine synthase [EC:2.1.1.98] D LRC180 conserved hypothetical protein K25222 mmp10; [methyl coenzyme M reductase]-L-arginine C-5-methyltransferase [EC:2.1.1.379] D RCIX2576 maa; maltose o-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D RRC392 conserved hypothetical protein K21935 ablB; beta-lysine N6-acetyltransferase [EC:2.3.1.264] D RCIX542 putative acetyltransferase (GNAT family) K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D RRC299 putative acetyltransferase (GNAT family) K03829 yedL; putative acetyltransferase [EC:2.3.1.-] D LRC549 glycosyltransferase (group 1) K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D RCIX304 dys-1; putative deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D RRC163 dys-2; putative deoxyhypusine synthase K00809 DHPS; deoxyhypusine synthase [EC:2.5.1.46] D LRC440 thrC-2; threonine synthase K15527 K15527; cysteate synthase [EC:2.5.1.76] D RCIX1253 conserved hypothetical protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D LRC280 tgt-1; archaeosine tRNA-ribosyltransferase K07557 tgtA2; archaeosine synthase alpha-subunit [EC:2.6.1.97 2.6.1.-] D LRC279 conserved hypothetical protein K06936 raSEA; archaeosine synthase beta-subunit [EC:2.6.1.-] D RRC333 conserved hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D RCIX1982 hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D RCIX2458 putative CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D RCIX2288 putative CDP-alcohol phosphatidyltransferase K17884 E2.7.8.39; archaetidylinositol phosphate synthase [EC:2.7.8.39] D RCIX1188 ppsA-1; phosphoenolpyruvate synthetase (PEP synthase) K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6] D RCIX541 conserved hypothetical protein K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D RRC158 conserved hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-] D LRC134 conserved hypothetical protein K11750 frsA; esterase FrsA [EC:3.1.-.-] D RCIX1008 conserved hypothetical protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D RCIX1487 predicted methanol dehydrogenase regulator MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RCIX2663 predicted ATPase (chaperonin ClpA/B family) K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D RRC488 conserved hypothetical protein K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D LRC219 predicted UV damage repair endonuclease (UvdE-like) K13281 uvsE; UV DNA damage endonuclease [EC:3.-.-.-] D RCIX2357 conserved hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D RCIA125 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D RCIX867 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D RCIX692 conserved hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D RCIX2012 hgdC-2; 2-hydroxyglutaryl-CoA dehydratase activator,component C (archerase) K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D RCIX2079 conserved hypothetical protein K24409 ycaO; thioglycine synthase [EC:6.2.2.1] D RCIX2147 rtcA; putative RNA 3\'-phosphate cyclase K01974 RTCA; RNA 3'-terminal phosphate cyclase (ATP) [EC:6.5.1.4] D RRC473 copB; putative Cu(2+)-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D RRC326 cation-transporting P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D LRC108 cation-transporting P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D LRC518 cation-transporting P-type ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D RCIX2335 cadA; putative Cd(2+)-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D RCIX1787 cation-transporting P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D RCIX2694 mgtA; putative Mg(2+)-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] C 99981 Carbohydrate metabolism C 99982 Energy metabolism D RCIX190 conserved hypothetical protein K19824 fprB; rubrerythrin D RCIX572 fdhD-1; formate dehydrogenase, delta subunit (accessory protein) K02379 fdhD; FdhD protein D RCIX1643 fdhD-2; putative formate dehydrogenase accessory protein K02379 fdhD; FdhD protein D RCIX1644 fdhD-3; putative formate dehydrogenase accessory protein K02379 fdhD; FdhD protein D LRC201 fdx3-1; 2(4Fe-4S) ferredoxin K05337 fer; ferredoxin D RCIX1564 putative Fe-S cluster assembly protein (NifU-like) K04488 iscU; nitrogen fixation protein NifU and related proteins D RCIX2383 hydrogenase, large subunit-like protein (HycE-like) K15830 hycE; formate hydrogenlyase subunit 5 D RCIX479 [NiFe]-hydrogenase, large subunit (EchE-like) K15830 hycE; formate hydrogenlyase subunit 5 D RCIX325 conserved hypothetical protein K02585 nifB; nitrogen fixation protein NifB D RCIX1616 nifN; nitrogenase molybdenum-iron cofactor biosynthesis protein K02592 nifN; nitrogenase molybdenum-iron protein NifN D RCIX1614 nifE; nitrogenase molybdenum-iron cofactor biosynthesis protein K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE D RRC102 predicted flavodoxin K03839 fldA; flavodoxin I D RCIX1695 predicted flavodoxin K03839 fldA; flavodoxin I D RCIX83 predicted flavodoxin-like protein K03839 fldA; flavodoxin I D RCIX1882 echA; Ech hydrogenase, subunit A K14086 echA; ech hydrogenase subunit A D RCIX1883 echB; Ech hydrogenase, subunit B K14087 echB; ech hydrogenase subunit B D RCIX1884 echC; Ech hydrogenase, subunit C K14088 echC; ech hydrogenase subunit C D RCIX1886 echD; Ech hydrogenase, subunit D K14089 echD; ech hydrogenase subunit D D RCIX1887 echE; Ech hydrogenase, subunit E K14090 echE; ech hydrogenase subunit E D RCIX1888 echF; Ech hydrogenase, subunit F K14091 echF; ech hydrogenase subunit F D RCIX2266 conserved hypothetical protein K06862 ehbQ; energy-converting hydrogenase B subunit Q D RRC229 fdx4-2; 4(4Fe-4S) polyferredoxin K04014 nrfC; protein NrfC C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism C 99986 Glycan metabolism D RCIX890 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism C 99988 Secondary metabolism D RRC291 predicted NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone) C 99999 Others D RCIX2080 conserved hypothetical protein K24410 tfuA; TfuA protein B B 09192 Unclassified: genetic information processing C 99973 Transcription D RCIX2456 putative transcription factor K03627 MBF1; putative transcription factor D RCIX2461 albA; DNA/RNA-binding protein Alba K03622 ssh10b; archaea-specific DNA-binding protein D LRC234 putative small nuclear ribonucleoprotein (snRNP) Sm-like protein K04796 RUXX; small nuclear ribonucleoprotein D RCIX1608 nifl-1; nitrogen regulator (P-II family) K02589 nifHD1; nitrogen regulatory protein PII 1 D RCIX1609 nifl-2; nitrogen regulator (P-II family) K02590 nifHD2; nitrogen regulatory protein PII 2 D RCIX303 conserved hypothetical protein K21640 nrpRII; global nitrogen regulator NrpRII D RCIX1391 conserved hypothetical protein K07744 K07744; transcriptional regulator C 99974 Translation D RCIX2351 conserved hypothetical protein K07572 K07572; putative nucleotide binding protein D LRC353 mRNA 3-end processing factor K07577 K07577; putative mRNA 3-end processing factor D RCIX1272 conserved hypothetical protein K07577 K07577; putative mRNA 3-end processing factor D RCIX2327 conserved hypothetical protein K07577 K07577; putative mRNA 3-end processing factor D LRC268 predicted N6 adenine-specific DNA methyltransferase K07579 K07579; putative methylase D RCIX1378 conserved hypothetical protein K07580 K07580; Zn-ribbon RNA-binding protein D RCIX2118 conserved hypothetical protein K07581 K07581; RNA-binding protein D RCIX1045 conserved hypothetical protein K07585 K07585; tRNA methyltransferase C 99975 Protein processing D RCIX525 hypC; hydrogenase expression/formation protein (maturation factor) K04653 hypC; hydrogenase expression/formation protein HypC D RCIX1381 hypD; hydrogenase expression/formation protein (maturation factor) K04654 hypD; hydrogenase expression/formation protein HypD D RCIX522 hypE; hydrogenase expression/formation protein (maturation factor) K04655 hypE; hydrogenase expression/formation protein HypE D RCIX1142 hypF; putative hydrogenase expression/formation protein (maturation factor) K04656 hypF; hydrogenase maturation protein HypF D RRC491 conserved hypothetical protein K07388 K07388; hydrogenase expression/formation protein D RCIX2601 glutaredoxin-like protein K06191 nrdH; glutaredoxin-like protein NrdH D RCIX2470 glutaredoxin-like protein K06191 nrdH; glutaredoxin-like protein NrdH D RCIX415 putative archaeosine tRNA-ribosyltransferase K07398 K07398; conserved protein with predicted RNA binding PUA domain C 99976 Replication and repair D RCIX1206 putative DNA glycosylase K07457 K07457; endonuclease III related protein D RRC419 putative DNA-binding protein (translin family) K07477 K07477; translin D RCIX2182 hypothetical phage-like protein K06919 K06919; putative DNA primase/helicase D RCIX812 tnp-11; predicted transposase (IS4) K07481 K07481; transposase, IS5 family D RRC137 tnp-26; transposase K07485 K07485; transposase D RCIX1259 tnp-13; transposase K07485 K07485; transposase D RCIX1462 tnp-15; transposase K07485 K07485; transposase D RCIX388 tnp-7; transposase K07485 K07485; transposase D RCIX171 tnp-4; transposase K07485 K07485; transposase C 99979 Viral proteins C 99998 Others D RCIX27 conserved hypothetical protein K03969 pspA; phage shock protein A B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D RCIX290 pitA; phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D RCIX2291 putative Na(+)/alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D RCIX67 putative Na(+)-dependent symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family C 99978 Cell growth D RCIX997 cooC-3; putative carbon monoxide dehydrogenase maturation factor (accessory nickel-insertion protein) K07321 cooC; CO dehydrogenase maturation factor D LRC465 cooC-1; putative carbon monoxide dehydrogenase maturation factor (accessory nickel-insertion protein) K07321 cooC; CO dehydrogenase maturation factor D LRC466 cooC-2; putative carbon monoxide dehydrogenase maturation factor (accessory nickel-insertion protein) K07321 cooC; CO dehydrogenase maturation factor D RCIX1384 conserved hypothetical protein K06384 spoIIM; stage II sporulation protein M D RCIX1386 conserved hypothetical protein K06384 spoIIM; stage II sporulation protein M C 99993 Cell motility D LRC568 conserved hypothetical protein K09156 cheF; taxis protein CheF D LRC184 hypothetical protein K23255 pilA; archaeal type IV pilus assembly protein PilA D RCIX308 hypothetical protein K23255 pilA; archaeal type IV pilus assembly protein PilA D LRC183 hypothetical protein K23255 pilA; archaeal type IV pilus assembly protein PilA D RCIX111 hypothetical protein K23255 pilA; archaeal type IV pilus assembly protein PilA C 99995 Signaling proteins D RCIX422 conserved hypothetical protein K07166 K07166; ACT domain-containing protein D LRC259 predicted endonuclease/nucleotidyltransferase K07182 K07182; CBS domain-containing protein D RCIX107 predicted ATPase (RecA family) K08482 kaiC; circadian clock protein KaiC D LRC23 putative ATPase (KaiC family) K08482 kaiC; circadian clock protein KaiC D RCIX117 conserved hypothetical protein K08482 kaiC; circadian clock protein KaiC D RCIX1046 conserved hypothetical protein K06875 PDCD5; programmed cell death protein 5 C 99992 Structural proteins D RCIX2447 hypothetical protein K07340 ybbJ; inner membrane protein C 99994 Others D RCIX2755 phoU; phosphate uptake regulator K02039 phoU; phosphate transport system protein D RCIX29 phosphate uptake regulator (PhoU family) K02039 phoU; phosphate transport system protein D RCIX741 cutA; divalent cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D RCIX661 moeA-1; molybdopterin biosynthesis protein A K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] B B 09194 Poorly characterized C 99996 General function prediction only D RCIX2289 putative metal-dependent phosphoesterase (PHP family) K04477 ycdX; putative hydrolase D RCIX20 gsp-3; putative bacterial type II secretion system ATPase K06865 K06865; ATPase D LRC237 predicted Zn-finger protein (ZPR1-type) K06874 K06874; zinc finger protein D LRC3 ATP-dependent RNA helicase K06877 K06877; DEAD/DEAH box helicase domain-containing protein D RCIX823 predicted drug exporter (acriflavin resistance protein family) K06994 K06994; putative drug exporter of the RND superfamily D LRC560 conserved hypothetical protein K06994 K06994; putative drug exporter of the RND superfamily D RCIX924 putative hydrolase (HAD superfamily) K07025 K07025; putative hydrolase of the HAD superfamily D RCIX925 putative hydrolase (HAD superfamily) K07025 K07025; putative hydrolase of the HAD superfamily D RCIX28 putative hydrolase (haloacid dehalogenase superfamily) K07025 K07025; putative hydrolase of the HAD superfamily D RCIX652 HesB family protein K15724 erpA; iron-sulfur cluster insertion protein D RCIX769 predicted membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D RCIX2306 hypothetical protein K07038 K07038; inner membrane protein D RCIX1452 putative membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D RCIX1848 putative TatD-related deoxyribonuclease K07049 K07049; TatD-related deoxyribonuclease D RCIX1728 predicted phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D RCIX947 putative phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D RCIX1059 hypothetical protein K07143 K07143; UPF0148 protein D RCIX175 hypothetical protein K03095 sprL; SprT-like protein D RCIX66 conserved hypothetical protein K00389 yidH; putative membrane protein D RCIX587 conserved hypothetical protein K08971 K08971; putative membrane protein D RCIX1732 conserved hypothetical protein K08975 K08975; putative membrane protein D RRC525 conserved hypothetical protein K08979 K08979; putative membrane protein D RRC269 conserved hypothetical protein K08981 K08981; putative membrane protein C 99997 Function unknown D RRC339 conserved hypothetical protein K06869 K06869; uncharacterized protein D RCIX62 atsB-2; arylsulfatase regulator K06871 K06871; uncharacterized protein D LRC99 atsB-1; arylsulfatase regulator K06871 K06871; uncharacterized protein D RCIX2717 conserved hypothetical protein K06873 K06873; uncharacterized protein D RCIX223 conserved hypothetical protein K06873 K06873; uncharacterized protein D RRC310 hypothetical protein K06884 K06884; uncharacterized protein D RRC309 hypothetical protein K06884 K06884; uncharacterized protein D LRC281 hypothetical protein K06884 K06884; uncharacterized protein D RCIX1157 gsiB; putative general stress protein B K06884 K06884; uncharacterized protein D LRC55 hypothetical protein K06884 K06884; uncharacterized protein D RCIX977 putative metal-dependent phosphohydrolase (HD superfamily) K06885 K06885; uncharacterized protein D RRC451 putative metal-dependent phosphohydrolase (HD superfamily) K06885 K06885; uncharacterized protein D RCIX1513 conserved hypothetical protein K06888 K06888; uncharacterized protein D RRC150 putative hydrolase K06889 K06889; uncharacterized protein D RCIX1093 hypothetical protein K06889 K06889; uncharacterized protein D LRC272 conserved hypothetical protein K06913 K06913; uncharacterized protein D LRC524 conserved hypothetical protein K06933 K06933; uncharacterized protein D RCIX269 conserved hypothetical protein K06935 K06935; uncharacterized protein D RRC161 hypothetical protein K06940 K06940; uncharacterized protein D RCIX2200 conserved hypothetical protein K06940 K06940; uncharacterized protein D RCIX403 conserved hypothetical protein K06940 K06940; uncharacterized protein D RCIX1408 conserved hypothetical protein K06940 K06940; uncharacterized protein D RRC314 hypothetical protein K06940 K06940; uncharacterized protein D RRC479 hypothetical protein K06940 K06940; uncharacterized protein D RRC362 hypothetical protein K06940 K06940; uncharacterized protein D RCIX894 putative GTP-binding protein (Ras GTPase family) K06945 K06945; uncharacterized protein D RCIX293 conserved hypothetical protein K06945 K06945; uncharacterized protein D LRC275 conserved hypothetical protein K06950 K06950; uncharacterized protein D RCIX870 putative metallo-phosphoesterase K06953 K06953; uncharacterized protein D LRC424 predicted phosphoesterase K06953 K06953; uncharacterized protein D RCIX440 putative transporter (RND superfamily) K07003 K07003; uncharacterized protein D LRC349 conserved hypothetical protein K07005 K07005; uncharacterized protein D RCIX2366 pyridoxamine 5\'-phosphate oxidase-related protein K07005 K07005; uncharacterized protein D RCIX428 putative pyridoxamine 5\'-phosphate-related protein K07005 K07005; uncharacterized protein D RRC78 hypothetical protein K07005 K07005; uncharacterized protein D RCIX2194 conserved hypothetical protein K07006 K07006; uncharacterized protein D RCIX1891 conserved pyridoxamine 5\'-phosphate oxidase-related protein K07006 K07006; uncharacterized protein D RCIX1698 conserved hypothetical protein K07013 K07013; uncharacterized protein D RCIX2213 putative transcription regulator (ArsR family) K07013 K07013; uncharacterized protein D RCIX138 conserved hypothetical protein K07034 K07034; uncharacterized protein D RCIX2365 mRNA cleavage/polyadenylation specificity factor,100 kD subunit K07041 K07041; uncharacterized protein D LRC336 conserved hypothetical protein K07051 K07051; uncharacterized protein D RCIX152 conserved hypothetical protein K07068 K07068; uncharacterized protein D RCIX740 predicted nucleotidyltransferase K07073 K07073; uncharacterized protein D RCIX2176 putative aldo/keto reductase K07079 K07079; uncharacterized protein D RCIX319 putative aldo/keto reductase (2[4Fe-4S] ferredoxin-domain protein) K07079 K07079; uncharacterized protein D RRC348 predicted TRAP-type transport system, periplasmic component K07080 K07080; uncharacterized protein D RCIX1653 conserved hypothetical protein K07089 K07089; uncharacterized protein D RCIX2106 conserved hypothetical protein K07090 K07090; uncharacterized protein D RCIX2278 putative metallophosphoesterase K07095 K07095; uncharacterized protein D RCIX2360 predicted metallophosphoesterase K07096 K07096; uncharacterized protein D RCIX1116 putative metallophosphoesterase K07096 K07096; uncharacterized protein D RRC416 putative phosphoribosyltransferase K07101 K07101; uncharacterized protein D LRC278 conserved hypothetical protein K07103 K07103; uncharacterized protein D RCIX1546 conserved hypothetical protein K07108 K07108; uncharacterized protein D RCIX1803 thiL-1; putative thiamin-monophosphate kinase K07123 K07123; uncharacterized protein D RRC443 conserved hypothetical protein K07129 K07129; uncharacterized protein D RCIX296 conserved hypothetical protein K07131 K07131; uncharacterized protein D RCIX472 conserved hypothetical protein K07131 K07131; uncharacterized protein D RCIX930 hypothetical protein K07131 K07131; uncharacterized protein D RCIX1279 conserved hypothetical protein K07133 K07133; uncharacterized protein D RCIX2698 predicted FAD-dependent oxidoreductase K07137 K07137; uncharacterized protein D RRC203 2(4Fe-4S) ferredoxin-domain protein K07138 K07138; uncharacterized protein D RCIX364 2(4Fe-4S) ferredoxin-domain protein K07138 K07138; uncharacterized protein D RCIX2018 conserved hypothetical protein K07158 K07158; uncharacterized protein D LRC292 predicted 3-isopropylmalate dehydratase K07159 K07159; uncharacterized protein D RCIX1858 conserved hypothetical protein K07163 K07163; uncharacterized protein D RCIX891 conserved hypothetical protein K08999 K08999; uncharacterized protein D RCIX335 hypothetical protein K09005 K09005; uncharacterized protein D LRC44 conserved hypothetical protein K09005 K09005; uncharacterized protein D RCIX840 conserved hypothetical protein K09120 K09120; uncharacterized protein D RRC155 conserved hypothetical protein K09122 K09122; uncharacterized protein D RCIX2721 conserved hypothetical protein K09126 K09126; uncharacterized protein D RCIX287 conserved hypothetical protein K09131 K09131; uncharacterized protein D RRC340 conserved hypothetical protein K09135 K09135; uncharacterized protein D RRC277 conserved hypothetical protein K09137 K09137; uncharacterized protein D RCIX35 conserved hypothetical protein K09139 K09139; uncharacterized protein D RCIX292 conserved hypothetical protein K09141 K09141; uncharacterized protein D RCIX1446 conserved hypothetical protein K09144 K09144; uncharacterized protein D RCIX1331 conserved hypothetical protein K09147 K09147; uncharacterized protein D RCIX2245 conserved hypothetical protein K09148 K09148; uncharacterized protein D RCIX1248 conserved hypothetical protein K09150 K09150; uncharacterized protein D LRC236 conserved hypothetical protein K09152 K09152; uncharacterized protein D RRC403 conserved hypothetical protein K09154 K09154; uncharacterized protein D RCIX424 conserved hypothetical protein K09157 K09157; uncharacterized protein D RRC268 conserved hypothetical protein K09167 K09167; uncharacterized protein D RCIX975 hypothetical protein K09388 K09388; uncharacterized protein D RCIX1776 conserved hypothetical protein K09706 K09706; uncharacterized protein D RRC7 conserved hypothetical protein K09707 K09707; uncharacterized protein D RCIX280 conserved hypothetical protein K09713 K09713; uncharacterized protein D RCIX47 hypothetical protein K09715 K09715; uncharacterized protein D RCIX2451 conserved hypothetical protein K09717 K09717; uncharacterized protein D RCIX1057 conserved hypothetical protein K09721 K09721; uncharacterized protein D RCIX2443 conserved hypothetical protein K09725 K09725; uncharacterized protein D RCIX1929 conserved hypothetical protein K09726 K09726; uncharacterized protein D RCIX1948 conserved hypothetical protein K09726 K09726; uncharacterized protein D RCIX248 conserved hypothetical protein K09726 K09726; uncharacterized protein D RCIX2454 conserved hypothetical protein K09727 K09727; uncharacterized protein D RRC523 conserved hypothetical protein K09728 K09728; uncharacterized protein D RRC399 conserved hypothetical protein K09729 K09729; uncharacterized protein D LRC435 conserved hypothetical protein K09730 K09730; uncharacterized protein D RRC524 conserved hypothetical protein K09731 K09731; uncharacterized protein D RCIX2156 conserved hypothetical protein K09738 K09738; uncharacterized protein D RCIX1245 conserved hypothetical protein K09740 K09740; uncharacterized protein D RCIX1860 conserved hypothetical protein K09743 K09743; uncharacterized protein D LRC48 conserved hypothetical protein K09744 K09744; uncharacterized protein D RCIX408 conserved hypothetical protein K09746 K09746; uncharacterized protein D LRC265 conserved hypothetical protein K09746 K09746; uncharacterized protein D RCIX1007 hypothetical protein K09766 K09766; uncharacterized protein D RCIX17 conserved hypothetical protein K09779 K09779; uncharacterized protein D RCIX1720 conserved hypothetical protein K09790 K09790; uncharacterized protein D RCIX1750 conserved hypothetical protein K09791 K09791; uncharacterized protein D RCIX2641 conserved hypothetical protein K09807 K09807; uncharacterized protein D RCIX1074 conserved hypothetical protein K09927 K09927; uncharacterized protein D RRC217 conserved hypothetical protein K01163 K01163; uncharacterized protein D LRC2 conserved hypothetical protein K07502 yprB; uncharacterized protein D RCIX291 conserved hypothetical protein K07220 K07220; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 7, 2024