+D GENES KO
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KEGG Orthology (KO) - Rhodoferax ferrireducens
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rfr00010]
D Rfer_1121 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Rfer_1127 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rfer_1479 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_0362 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_2704 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rfer_1393 D-fructose 1,6-bisphosphatase K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D Rfer_0204 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rfer_1491 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rfer_4111 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rfer_3690 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rfer_1309 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rfer_0816 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rfer_2650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rfer_0205 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rfer_0088 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Rfer_2191 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rfer_2212 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_3650 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_0387 Pyruvate dehydrogenase (lipoamide) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Rfer_0386 Transketolase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Rfer_2213 Dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_0385 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2186 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Rfer_2185 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Rfer_2187 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rfer_2798 thiamine pyrophosphate enzyme-like TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rfer_0121 Alcohol dehydrogenase, zinc-binding K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rfer_2865 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Rfer_2439 Alcohol dehydrogenase, zinc-binding K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_2866 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D Rfer_2698 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2581 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_0388 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rfer_0717 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
C 00020 Citrate cycle (TCA cycle) [PATH:rfr00020]
D Rfer_1796 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Rfer_2366 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Rfer_1806 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rfer_2761 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Rfer_2380 Isocitrate dehydrogenase (NAD+) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D Rfer_2411 Isocitrate dehydrogenase (NAD+) K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D Rfer_2321 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Rfer_2320 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rfer_2798 thiamine pyrophosphate enzyme-like TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rfer_3944 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rfer_3945 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rfer_1216 Acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Rfer_1799 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rfer_1798 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rfer_1801 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rfer_1800 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Rfer_2583 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Rfer_2365 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Rfer_2403 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1803 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_2212 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_3650 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_0387 Pyruvate dehydrogenase (lipoamide) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Rfer_0386 Transketolase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Rfer_2213 Dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_0385 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_2186 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Rfer_2185 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Rfer_2187 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:rfr00030]
D Rfer_1127 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rfer_1125 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rfer_4034 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rfer_4033 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Rfer_0532 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rfer_4112 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rfer_1126 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D Rfer_2206 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rfer_0148 Phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D Rfer_2240 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rfer_1660 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rfer_0392 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rfer_2060 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D Rfer_2061 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Rfer_2144 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rfer_0956 gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D Rfer_0936 PfkB K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Rfer_0963 PfkB K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D Rfer_2850 phenylacetaldehyde:ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D Rfer_2329 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rfer_0204 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rfer_2704 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rfer_1393 D-fructose 1,6-bisphosphatase K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D Rfer_1479 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_0362 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:rfr00040]
D Rfer_0947 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D Rfer_0532 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rfer_0433 short-chain dehydrogenase/reductase SDR K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175]
D Rfer_0452 aldehyde dehydrogenase K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-]
D Rfer_3750 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:rfr00051]
D Rfer_1904 PfkB K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Rfer_1122 mannose-6-phosphate isomerase, type II K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Rfer_0711 mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Rfer_2999 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rfer_0712 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Rfer_1237 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Rfer_1235 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Rfer_3750 L-fuculose-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D Rfer_3136 short-chain dehydrogenase/reductase SDR K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D Rfer_3135 amidohydrolase 2 K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120]
D Rfer_3134 mandelate racemase/muconate lactonizing enzyme K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D Rfer_3128 short-chain dehydrogenase/reductase SDR K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D Rfer_3133 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D Rfer_1479 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_0362 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_2704 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rfer_1393 D-fructose 1,6-bisphosphatase K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D Rfer_0673 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D Rfer_0204 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rfer_1491 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rfer_0601 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:rfr00052]
D Rfer_0713 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rfer_1121 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Rfer_1479 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_0362 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_0951 galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D Rfer_0949 2-keto-3-deoxygalactonate kinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D Rfer_0937 2-dehydro-3-deoxygalactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D Rfer_0962 2-keto-3-deoxygalactonate kinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D Rfer_0950 2-keto-3-deoxy-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D Rfer_0938 2-keto-3-deoxy-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D Rfer_0961 2-keto-3-deoxy-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
C 00053 Ascorbate and aldarate metabolism [PATH:rfr00053]
D Rfer_0656 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_1241 2-dehydro-3-deoxyglucarate aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
D Rfer_0456 L-arabinonate dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25]
D Rfer_0453 2-dehydro-3-deoxy-L-arabinonate dehydratase K13876 araD; 2-keto-3-deoxy-L-arabinonate dehydratase [EC:4.2.1.43]
C 00500 Starch and sucrose metabolism [PATH:rfr00500]
D Rfer_1113 glycoside hydrolase, family 3-like K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rfer_1102 beta-glucosidase. Glycosyl Hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Rfer_1111 Beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Rfer_1104 glycoside hydrolase, family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Rfer_1250 Nucleotidyl transferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Rfer_0513 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D Rfer_0512 Glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Rfer_2162 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Rfer_3895 Alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Rfer_0511 Glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D Rfer_0515 Glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D Rfer_2160 Trehalose synthase-like K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D Rfer_0514 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Rfer_2156 Malto-oligosyltrehalose synthase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D Rfer_2161 alpha amylase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D Rfer_2158 Glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D Rfer_2157 Malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
D Rfer_2163 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D Rfer_2155 HAD-superfamily hydrolase subfamily IIB K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rfer_1121 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Rfer_1127 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rfer_1904 PfkB K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rfr00520]
D Rfer_1754 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Rfer_1904 PfkB K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D Rfer_1074 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rfer_2013 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D Rfer_1083 UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Rfer_0726 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D Rfer_2829 phosphoglycolate phosphatase K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D Rfer_0099 aminoglycoside phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D Rfer_0085 Nucleotidyl transferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D Rfer_2944 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rfer_2691 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rfer_0663 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Rfer_1238 WxcM-like K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D Rfer_0667 UDP-glucose/GDP-mannose dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Rfer_1121 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rfer_0713 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rfer_0656 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Rfer_0601 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Rfer_1127 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rfer_1122 mannose-6-phosphate isomerase, type II K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Rfer_2999 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rfer_0712 Nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D Rfer_0711 mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Rfer_1237 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Rfer_1235 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Rfer_0673 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D Rfer_1250 Nucleotidyl transferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Rfer_1251 NAD-dependent epimerase/dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D Rfer_3299 oxidoreductase FAD/NAD(P)-binding K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D Rfer_0513 Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:rfr00620]
D Rfer_2698 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2581 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_0388 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2186 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Rfer_2185 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Rfer_2187 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rfer_2798 thiamine pyrophosphate enzyme-like TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rfer_2212 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_3650 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_0387 Pyruvate dehydrogenase (lipoamide) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Rfer_0386 Transketolase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Rfer_2213 Dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_0385 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0455 Semialdehyde dehydrogenase, NAD - binding K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D Rfer_2865 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Rfer_0121 Alcohol dehydrogenase, zinc-binding K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rfer_2439 Alcohol dehydrogenase, zinc-binding K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rfer_2975 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Rfer_2974 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_0262 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_0205 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rfer_1351 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Rfer_3353 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rfer_0129 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rfer_3352 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Rfer_1786 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Rfer_0868 Carbamoyl-phosphate synthase L chain, ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rfer_1453 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_2866 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D Rfer_1216 Acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Rfer_0767 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D Rfer_2351 L-lactate dehydrogenase (cytochrome) K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D Rfer_1477 FAD linked oxidase-like K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
D Rfer_2552 Glyoxalase I K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Rfer_2801 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D Rfer_1462 Hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Rfer_0167 beta-lactamase-like K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D Rfer_3829 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D Rfer_2144 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rfer_1424 malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Rfer_0093 malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Rfer_2403 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1803 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_2583 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D Rfer_2365 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D Rfer_1714 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Rfer_0088 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Rfer_2191 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rfer_3581 Malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2345 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rfr00630]
D Rfer_1335 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D Rfer_2698 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2581 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_0388 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_3581 Malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9]
D Rfer_2403 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1803 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1796 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D Rfer_2366 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D Rfer_1806 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2560 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Rfer_2802 Carbamoyl-phosphate synthase L chain, ATP-binding K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
D Rfer_2803 Propionyl-CoA carboxylase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D Rfer_0868 Carbamoyl-phosphate synthase L chain, ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rfer_2805 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rfer_0606 FAD linked oxidase-like K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D Rfer_0480 FAD linked oxidase-like K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D Rfer_0481 protein of unknown function DUF224, cysteine-rich protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D Rfer_3829 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D Rfer_2144 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rfer_3611 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rfer_1722 HAD-superfamily hydrolase subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rfer_3737 Haloacid dehalogenase-like hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D Rfer_1391 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Rfer_0350 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2979 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2658 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rfer_3021 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rfer_3019 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_3020 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Rfer_2329 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rfer_0845 Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rfer_2247 Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rfer_0440 Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rfer_2061 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D Rfer_3261 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rfer_3269 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rfer_3270 NADH dehydrogenase (quinone) K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Rfer_3258 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Rfer_0609 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D Rfer_4155 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:rfr00640]
D Rfer_2698 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2581 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_0388 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2322 Propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Rfer_0767 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
D Rfer_2975 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Rfer_2974 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_0262 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_3554 branched-chain alpha-keto acid dehydrogenase E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rfer_3553 branched-chain alpha-keto acid dehydrogenase E1 component K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rfer_3552 branched-chain alpha-keto acid dehydrogenase E2 component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2186 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Rfer_2185 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Rfer_2187 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Rfer_3838 acyl-CoA dehydrogenase-like K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rfer_1643 Alcohol dehydrogenase, zinc-binding K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D Rfer_0309 Alcohol dehydrogenase, zinc-binding K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_1351 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Rfer_3353 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rfer_0129 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rfer_3352 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Rfer_1786 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Rfer_0868 Carbamoyl-phosphate synthase L chain, ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rfer_2049 Malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D Rfer_0592 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rfer_0373 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rfer_2802 Carbamoyl-phosphate synthase L chain, ATP-binding K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
D Rfer_2803 Propionyl-CoA carboxylase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D Rfer_2805 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rfer_3945 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rfer_3944 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rfer_0372 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rfer_1806 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D Rfer_4019 conserved hypothetical protein K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D Rfer_0017 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:rfr00650]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0224 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rfer_2272 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rfer_3517 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_2386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_2595 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_3838 acyl-CoA dehydrogenase-like K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rfer_0455 Semialdehyde dehydrogenase, NAD - binding K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D Rfer_2562 Poly(R)-hydroxyalkanoic acid synthase, class I K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D Rfer_2972 Poly-beta-hydroxybutyrate polymerase-like K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D Rfer_2340 polyhydroxyalkanoate depolymerase, intracellular K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D Rfer_2560 3-oxoacyl-[acyl-carrier-protein] reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D Rfer_0845 Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rfer_2247 Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rfer_0440 Tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D Rfer_1799 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rfer_1798 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rfer_1801 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rfer_1800 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Rfer_0592 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rfer_0598 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rfer_1216 Acetyl-CoA hydrolase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D Rfer_2186 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Rfer_2185 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Rfer_2187 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Rfer_3209 pyruvate flavodoxin/ferredoxin oxidoreductase-like K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D Rfer_2798 thiamine pyrophosphate enzyme-like TPP-binding K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D Rfer_3824 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rfer_4199 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rfer_2635 3-oxoacid CoA-transferase, subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Rfer_2634 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Rfer_3963 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Rfer_2069 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D Rfer_3285 short-chain dehydrogenase/reductase SDR K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
D Rfer_3022 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane K07518 E3.1.1.22; hydroxybutyrate-dimer hydrolase [EC:3.1.1.22]
D Rfer_0882 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3322 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3509 thiamine pyrophosphate enzyme-like TPP binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3323 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:rfr00660]
D Rfer_0882 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3322 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3509 thiamine pyrophosphate enzyme-like TPP binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3323 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rfer_3485 L-carnitine dehydratase/bile acid-inducible protein F K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]
D Rfer_3945 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D Rfer_3944 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D Rfer_4170 MaoC-like dehydratase K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56]
D Rfer_4180 MaoC-like dehydratase K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56]
D Rfer_0337 Dimethylmenaquinone methyltransferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rfer_1795 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rfer_1794 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rfer_1793 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:rfr00562]
D Rfer_3735 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
D Rfer_3736 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
D Rfer_2892 Inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Rfer_0372 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rfer_1491 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rfr00190]
D Rfer_1493 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D Rfer_1494 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D Rfer_1495 NADH (or F420H2) dehydrogenase, subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D Rfer_1496 NADH dehydrogenase I, D subunit K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D Rfer_1497 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D Rfer_1498 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D Rfer_1499 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D Rfer_1500 respiratory-chain NADH dehydrogenase, subunit 1 K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D Rfer_1501 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D Rfer_1502 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D Rfer_1503 NADH-ubiquinone oxidoreductase, chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D Rfer_1504 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D Rfer_1505 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D Rfer_1506 Proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D Rfer_1799 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D Rfer_1798 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D Rfer_1801 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D Rfer_1800 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D Rfer_2964 Ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Rfer_2965 cytochrome b/b6-like K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Rfer_2966 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Rfer_1689 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rfer_1684 cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D Rfer_1681 Cytochrome-c oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D Rfer_1680 cytochrome c oxidase, subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D Rfer_1682 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D Rfer_1688 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rfer_4127 cytochrome c oxidase, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Rfer_1930 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Rfer_4126 cytochrome C oxidase, mono-heme subunit/FixO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Rfer_1931 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Rfer_1932 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D Rfer_1933 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Rfer_2362 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Rfer_2363 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Rfer_2364 Cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D Rfer_4138 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_0762 hypothetical protein K08738 CYC; cytochrome c
D Rfer_2468 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_4085 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_1438 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_2736 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_4077 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_1168 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rfer_0108 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rfer_1161 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rfer_0106 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rfer_1169 H+-transporting two-sector ATPase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rfer_0107 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rfer_0109 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Rfer_1162 H+-transporting two-sector ATPase, delta/epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rfer_0105 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rfer_1165 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rfer_0112 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rfer_0110 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rfer_1166 H+-transporting two-sector ATPase, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rfer_0111 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rfer_1473 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D Rfer_2017 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:rfr00710]
D Rfer_1391 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D Rfer_3690 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rfer_4111 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rfer_0204 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rfer_2704 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rfer_1393 D-fructose 1,6-bisphosphatase K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D Rfer_4112 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D Rfer_2206 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D Rfer_1392 Phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19]
D Rfer_1491 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rfer_0532 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D Rfer_1714 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Rfer_0088 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D Rfer_1424 malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Rfer_0093 malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D Rfer_2403 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1803 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:rfr00680]
D Rfer_0121 Alcohol dehydrogenase, zinc-binding K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rfer_0122 Carboxylesterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D Rfer_3261 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rfer_3269 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D Rfer_3270 NADH dehydrogenase (quinone) K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9]
D Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D Rfer_3258 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D Rfer_2658 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rfer_2329 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rfer_2650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rfer_1714 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D Rfer_2403 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1803 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_0204 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D Rfer_2704 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rfer_1393 D-fructose 1,6-bisphosphatase K01086 fbp-SEBP; fructose-1,6-bisphosphatase I / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D Rfer_1479 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_0362 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D Rfer_2975 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D Rfer_2974 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_0262 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_2698 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2581 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_0388 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2186 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Rfer_2185 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Rfer_2187 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
D Rfer_2191 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D Rfer_1309 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rfer_0816 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rfer_2996 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1867 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rfer_1329 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Rfer_0818 phosphoserine:homoserine phosphotransferase / homoserine kinase / phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
C 00910 Nitrogen metabolism [PATH:rfr00910]
D Rfer_2790 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rfer_2791 nitrate/nitrite antiporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rfer_3742 Twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rfer_2554 twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rfer_3741 nitrate transport permease K15577 nrtB; nitrate/nitrite transport system permease protein
D Rfer_2555 nitrate transport permease K15577 nrtB; nitrate/nitrite transport system permease protein
D Rfer_2556 nitrate transport ATP-binding subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rfer_3740 ABC transporter related K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rfer_2792 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2793 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2795 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2559 assimilatory nitrate reductase (NADH) alpha subunit apoprotein K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-]
D Rfer_2557 assimilatory nitrite reductase (NAD(P)H) large subunit precursor K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4]
D Rfer_2558 assimilatory nitrite reductase (NAD(P)H) small subunit K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4]
D Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D Rfer_3199 Twin-arginine translocation pathway signal K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D Rfer_0059 hypothetical protein K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D Rfer_1960 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Rfer_1334 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D Rfer_1509 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Rfer_0350 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2979 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2933 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Rfer_2934 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rfer_3208 sulfide dehydrogenase (flavoprotein) subunit SudB / sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rfer_3739 cyanate lyase K01725 cynS; cyanate lyase [EC:4.2.1.104]
D Rfer_3841 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:rfr00920]
D Rfer_1762 Thiosulphate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Rfer_1781 Thiosulphate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rfer_1761 Sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rfer_1760 Sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rfer_1759 Sulphate transport system permease protein 1 K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rfer_1779 ABC transporter, substrate-binding protein, aliphatic sulphonates K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1778 ABC transporter, substrate-binding protein, aliphatic sulphonates K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_3116 ABC transporter, substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1460 Twin-arginine translocation pathway signal K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_2748 extracellular solute-binding protein, family 3 K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_3118 ABC transporter, substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1776 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_3114 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_2746 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_1775 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_2747 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_3115 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_1777 Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D Rfer_1780 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D Rfer_2460 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rfer_2459 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rfer_2458 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D Rfer_2456 nitrite and sulphite reductase 4Fe-4S protein K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D Rfer_3759 sulfide-quinone reductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D Rfer_2880 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rfer_2890 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rfer_1261 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rfer_1520 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Rfer_3460 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Rfer_0406 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Rfer_2682 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D Rfer_2393 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D Rfer_2845 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D Rfer_1006 AMP-dependent synthetase and ligase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44]
D Rfer_2268 acyl-CoA dehydrogenase-like K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D Rfer_1959 acyl-CoA dehydrogenase-like K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D Rfer_3519 acyl-CoA dehydrogenase-like K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D Rfer_0274 Enoyl-CoA hydratase/isomerase K20036 dmdD; (methylthio)acryloyl-CoA hydratase [EC:4.2.1.155]
D Rfer_0359 putative conserved integral membrane protein K21310 mddA; methanethiol S-methyltransferase [EC:2.1.1.334]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rfr00061]
D Rfer_1351 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D Rfer_3353 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rfer_0129 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D Rfer_3352 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D Rfer_1786 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D Rfer_0868 Carbamoyl-phosphate synthase L chain, ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rfer_1733 acyl carrier protein K02078 acpP; acyl carrier protein
D Rfer_3980 hypothetical protein K02078 acpP; acyl carrier protein
D Rfer_0384 phosphopantetheine-binding K02078 acpP; acyl carrier protein
D Rfer_0698 conserved hypothetical protein K02078 acpP; acyl carrier protein
D Rfer_3978 acyl carrier protein K02078 acpP; acyl carrier protein
D Rfer_1849 (Acyl-carrier protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rfer_1731 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rfer_1730 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rfer_3974 conserved hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rfer_3984 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rfer_3977 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rfer_1734 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_3139 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_3999 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_4001 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_1638 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3586 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_1732 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3994 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3195 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_4047 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_1999 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rfer_4002 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rfer_2127 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Rfer_3898 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_4067 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3752 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3775 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3503 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3542 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2283 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0545 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0321 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2479 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3284 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rfr00071]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3516 Acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_4205 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_3517 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_2386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_2595 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_3838 acyl-CoA dehydrogenase-like K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rfer_1019 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_0062 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_3328 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_3506 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_3689 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_4207 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_0994 acyl-CoA dehydrogenase-like K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D Rfer_2752 acyl-CoA dehydrogenase-like K00255 ACADL; long-chain-acyl-CoA dehydrogenase [EC:1.3.8.8]
D Rfer_4070 acyl-CoA dehydrogenase-like K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rfer_3898 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_4067 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3752 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3775 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3503 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3542 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2283 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0545 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0321 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2479 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3284 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
D Rfer_0092 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
D Rfer_0121 Alcohol dehydrogenase, zinc-binding K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rfer_2865 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:rfr00561]
D Rfer_2329 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_2439 Alcohol dehydrogenase, zinc-binding K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D Rfer_3678 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Rfer_1729 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Rfer_2695 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Rfer_3693 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rfer_2021 lyso-ornithine lipid acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rfer_0505 Diacylglycerol O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D Rfer_1475 Diacylglycerol O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D Rfer_3531 Diacylglycerol O-acyltransferase K00635 tgs; diacylglycerol O-acyltransferase / wax synthase [EC:2.3.1.20 2.3.1.75]
D Rfer_3358 Triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:rfr00564]
D Rfer_1313 Glycerol-3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D Rfer_2333 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Rfer_3670 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D Rfer_2374 putative ferredoxin K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D Rfer_2695 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Rfer_3693 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rfer_2021 lyso-ornithine lipid acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rfer_3735 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
D Rfer_3736 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
D Rfer_0525 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Rfer_1116 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Rfer_1283 Glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D Rfer_0586 Ethanolamine ammonia-lyase heavy chain K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7]
D Rfer_0587 Ethanolamine ammonia-lyase light chain K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7]
D Rfer_2771 phospholipid N-methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D Rfer_1993 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rfer_3325 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rfer_0607 Phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D Rfer_0077 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D Rfer_2153 cardiolipin synthetase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rfer_0078 cardiolipin synthetase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rfer_3617 putative phospholipase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rfer_1300 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D Rfer_2245 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism [PATH:rfr00565]
D Rfer_2332 FAD linked oxidase-like K00803 AGPS; alkyldihydroxyacetonephosphate synthase [EC:2.5.1.26]
D Rfer_0525 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Rfer_3735 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
D Rfer_3736 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:rfr00600]
D Rfer_1106 glycoside hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00590 Arachidonic acid metabolism [PATH:rfr00590]
D Rfer_0525 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Rfer_3267 glutathione S-transferase-like K04097 HPGDS; prostaglandin-H2 D-isomerase / glutathione transferase [EC:5.3.99.2 2.5.1.18]
C 00591 Linoleic acid metabolism
D Rfer_0525 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:rfr00592]
D Rfer_0525 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D Rfer_3516 Acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_4205 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rfr01040]
D Rfer_3182 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Rfer_2424 lipolytic enzyme, G-D-S-L K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Rfer_0997 Palmitoyl-CoA hydrolase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D Rfer_3494 thioesterase superfamily K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rfr00230]
D Rfer_1507 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rfer_2240 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rfer_1660 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rfer_0392 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D Rfer_2683 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Rfer_2076 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D Rfer_1649 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Rfer_3559 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D Rfer_2420 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D Rfer_2512 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D Rfer_0196 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D Rfer_0197 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D Rfer_0203 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D Rfer_4049 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Rfer_1582 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rfer_4239 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Rfer_0734 5-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Rfer_2782 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rfer_2688 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D Rfer_2564 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Rfer_2288 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Rfer_2311 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rfer_1630 Ham1-like protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D Rfer_2287 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rfer_3037 guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D Rfer_3295 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D Rfer_3147 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D Rfer_2197 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3011 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3347 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3348 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Rfer_0368 Ribonucleoside-triphosphate reductase, anaerobic K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Rfer_2927 Deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D Rfer_3149 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Rfer_2032 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D Rfer_2071 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D Rfer_2284 putative adenylate/guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D Rfer_2296 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Rfer_3569 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D Rfer_3297 adenosine deaminase K21053 ade; adenine deaminase [EC:3.5.4.2]
D Rfer_3158 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Rfer_3027 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D Rfer_2460 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rfer_2459 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rfer_3402 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Rfer_3400 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Rfer_3399 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:rfr00240]
D Rfer_2006 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Rfer_2004 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rfer_1380 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Rfer_3464 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Rfer_1381 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D Rfer_2205 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D Rfer_3928 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D Rfer_3776 Orotidine 5'-phosphate decarboxylase subfamily 2 K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D Rfer_1991 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D Rfer_2311 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rfer_2081 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D Rfer_1783 conserved hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D Rfer_2648 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D Rfer_0734 5-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Rfer_2782 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rfer_2688 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D Rfer_2073 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rfer_1379 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rfer_0368 Ribonucleoside-triphosphate reductase, anaerobic K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D Rfer_3293 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D Rfer_2197 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3011 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3347 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3348 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D Rfer_2255 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D Rfer_2646 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Rfer_2241 Pyrimidine nucleoside phosphorylase-like K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D Rfer_4385 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D Rfer_2986 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rfer_1063 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rfer_0158 Amidase, hydantoinase/carbamoylase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rfer_0165 Amidase, hydantoinase/carbamoylase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rfr00250]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_3031 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Rfer_3108 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rfer_2993 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rfer_3101 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Rfer_3409 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Rfer_0683 asparagine synthase (glutamine-hydrolysing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_3652 Asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_0669 Asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_0671 Asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_1911 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rfer_4054 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Rfer_3846 fumarate lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D Rfer_2689 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rfer_1710 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rfer_2296 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D Rfer_4049 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D Rfer_1380 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D Rfer_0592 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rfer_0598 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rfer_2933 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Rfer_2934 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rfer_3208 sulfide dehydrogenase (flavoprotein) subunit SudB / sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D Rfer_1509 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Rfer_2811 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Rfer_0350 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2979 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2006 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D Rfer_2004 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D Rfer_1074 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rfer_2683 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:rfr00260]
D Rfer_1353 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rfer_1792 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rfer_1912 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Rfer_1323 homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D Rfer_0818 phosphoserine:homoserine phosphotransferase / homoserine kinase / phosphoserine phosphatase K02203 thrH; phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]
D Rfer_1913 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D Rfer_3604 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D Rfer_2658 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rfer_3829 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81]
D Rfer_2144 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D Rfer_2329 glycerate 2-kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D Rfer_1309 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rfer_0816 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rfer_2996 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1867 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rfer_1329 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D Rfer_3021 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rfer_3019 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_3020 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rfer_3325 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D Rfer_1084 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Rfer_0344 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rfer_0733 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rfer_0929 D-serine deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D Rfer_0964 D-serine deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D Rfer_3727 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Rfer_1787 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Rfer_1788 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Rfer_1328 Tryptophan synthase, beta chain-like K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:rfr00270]
D Rfer_2890 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rfer_1261 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rfer_1520 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Rfer_3460 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D Rfer_2294 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Rfer_0460 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rfer_0466 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rfer_3880 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Rfer_2633 Spermidine synthase-like K00797 speE; spermidine synthase [EC:2.5.1.16]
D Rfer_0785 putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Rfer_3751 methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D Rfer_2564 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D Rfer_3749 translation initiation factor 2B subunit I family (IF-2BI) K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D Rfer_2174 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rfer_3649 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Rfer_4139 Methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Rfer_3077 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Rfer_0652 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rfer_1353 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rfer_1792 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rfer_1912 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Rfer_0406 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D Rfer_3160 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Rfer_1327 O-acetylhomoserine/O-acetylserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D Rfer_2682 O-succinylhomoserine sulfhydrylase K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D Rfer_0506 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rfer_0763 Glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rfer_3571 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rfer_0765 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_2880 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rfer_3727 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Rfer_2403 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1803 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D Rfer_1084 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D Rfer_2378 cysteine synthase K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D Rfer_2996 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1867 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:rfr00280]
D Rfer_0506 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rfer_3554 branched-chain alpha-keto acid dehydrogenase E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rfer_3553 branched-chain alpha-keto acid dehydrogenase E1 component K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rfer_3552 branched-chain alpha-keto acid dehydrogenase E2 component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_3838 acyl-CoA dehydrogenase-like K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rfer_1019 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_0062 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_3328 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_3506 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_3689 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_4207 acyl-CoA dehydrogenase-like K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D Rfer_3842 isovaleryl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_3516 Acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_4205 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_2802 Carbamoyl-phosphate synthase L chain, ATP-binding K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
D Rfer_2803 Propionyl-CoA carboxylase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D Rfer_0868 Carbamoyl-phosphate synthase L chain, ATP-binding K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D Rfer_2805 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rfer_3876 6-phosphogluconate dehydrogenase, NAD-binding K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D Rfer_0372 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_1925 AMP-dependent synthetase and ligase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-]
D Rfer_0373 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rfer_0592 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rfer_3830 3-methylcrotonoyl-CoA carboxylase, alpha subunit K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D Rfer_3832 Propionyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D Rfer_3831 Enoyl-CoA hydratase/isomerase K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D Rfer_3824 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rfer_4199 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rfer_2635 3-oxoacid CoA-transferase, subunit A K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D Rfer_2634 butyryl-CoA:acetate CoA transferase K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D Rfer_3963 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rfr00290]
D Rfer_0344 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rfer_0733 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D Rfer_1795 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D Rfer_1794 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D Rfer_1793 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D Rfer_0882 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3322 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3509 thiamine pyrophosphate enzyme-like TPP binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3323 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rfer_3324 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Rfer_1921 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rfer_0506 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rfer_1911 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rfer_2345 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:rfr00300]
D Rfer_1912 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D Rfer_1353 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rfer_1792 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rfer_1636 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rfer_2097 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rfer_1026 2-dehydro-3-deoxy-L-arabinonate dehydratase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rfer_0755 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D Rfer_2046 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D Rfer_2121 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rfer_2047 succinyldiaminopimelate aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Rfer_2044 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rfer_0166 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rfer_3444 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Rfer_2916 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Rfer_0700 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Rfer_1518 diaminopimelate dehydrogenase K03340 dapdh; diaminopimelate dehydrogenase [EC:1.4.1.16]
D Rfer_3729 aminotransferase, class I and II K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Rfer_2606 aminotransferase, class I and II K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D Rfer_3430 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rfer_3429 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rfr00310]
D Rfer_3228 delta-1-piperideine-6-carboxylate dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D Rfer_0880 aldehyde dehydrogenase K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase
D Rfer_2320 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_4070 acyl-CoA dehydrogenase-like K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3727 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Rfer_0592 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rfer_0598 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rfer_4069 L-carnitine dehydratase/bile acid-inducible protein F K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-]
D Rfer_3891 L-lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D Rfer_3888 beta-lysine 5,6-aminomutase alpha subunit / D-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3]
D Rfer_3887 beta-lysine 5,6-aminomutase beta subunit / D-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3]
D Rfer_3890 L-erythro-3,5-diaminohexanoate dehydrogenase K18012 kdd; L-erythro-3,5-diaminohexanoate dehydrogenase [EC:1.4.1.11]
D Rfer_3885 3-keto-5-aminohexanoate cleavage enzyme K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D Rfer_2814 protein of unknown function DUF849 K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D Rfer_3886 3-aminobutyryl-CoA ammonia-lyase K18014 kal; 3-aminobutyryl-CoA ammonia-lyase [EC:4.3.1.14]
D Rfer_1037 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_1546 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:rfr00220]
D Rfer_2120 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D Rfer_2689 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rfer_1710 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rfer_3884 arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1]
D Rfer_0127 Allophanate hydrolase subunit 1 K01941 E6.3.4.6; urea carboxylase [EC:6.3.4.6]
D Rfer_3402 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Rfer_3400 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Rfer_3399 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D Rfer_0350 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2979 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_1509 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_1911 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rfer_2105 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D Rfer_2910 glutamate N-acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D Rfer_3524 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D Rfer_3946 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D Rfer_2121 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:rfr00330]
D Rfer_3746 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D Rfer_2126 ornithine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D Rfer_0346 agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D Rfer_2633 Spermidine synthase-like K00797 speE; spermidine synthase [EC:2.5.1.16]
D Rfer_0785 putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D Rfer_0351 aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0597 agmatinase K12255 gbuA; guanidinobutyrase [EC:3.5.3.7]
D Rfer_0347 FAD dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D Rfer_0356 aldehyde dehydrogenase (acceptor) K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D Rfer_3884 arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1]
D Rfer_3679 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D Rfer_2811 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Rfer_3883 ornithine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D Rfer_1271 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Rfer_0761 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D Rfer_0089 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_1037 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_1546 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:rfr00340]
D Rfer_2945 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D Rfer_2297 tRNA synthetase, class II (G, H, P and S) K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D Rfer_2953 phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D Rfer_2952 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D Rfer_2950 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D Rfer_2949 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D Rfer_2951 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D Rfer_2948 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D Rfer_2615 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_1408 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2947 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2946 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D Rfer_4154 formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D Rfer_4155 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_1610 putative uncharacterized conserved protein K18911 egtD; L-histidine Nalpha-methyltransferase [EC:2.1.1.44]
C 00350 Tyrosine metabolism [PATH:rfr00350]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_2615 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_1408 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2947 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2174 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rfer_0613 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D Rfer_0121 Alcohol dehydrogenase, zinc-binding K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rfer_2865 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Rfer_0329 oxidoreductase-like K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D Rfer_0941 2-dehydro-3-deoxyglucarate aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D Rfer_0495 HpcH/HpaI aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D Rfer_0598 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D Rfer_2567 fumarylacetoacetate (FAA) hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20]
C 00360 Phenylalanine metabolism [PATH:rfr00360]
D Rfer_1009 Enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D Rfer_4068 Enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_0224 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rfer_2272 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_2615 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_1408 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2947 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2174 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rfer_0240 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D Rfer_1987 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D Rfer_1037 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_1546 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00529 hcaD; 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase component [EC:1.18.1.3]
C 00380 Tryptophan metabolism [PATH:rfr00380]
D Rfer_2320 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_4070 acyl-CoA dehydrogenase-like K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2475 tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0518 phenylpyruvate decarboxylase K04103 ipdC; indolepyruvate decarboxylase [EC:4.1.1.74]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rfr00400]
D Rfer_3367 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rfer_0482 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rfer_1247 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Rfer_2926 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D Rfer_2381 3-dehydroquinate dehydratase K03785 aroD; 3-dehydroquinate dehydratase I [EC:4.2.1.10]
D Rfer_3413 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D Rfer_2925 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D Rfer_1567 3-phosphoshikimate 1-carboxyvinyltransferase / cytidylate kinase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D Rfer_3161 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D Rfer_3607 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rfer_3605 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Rfer_3602 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D Rfer_1789 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D Rfer_3601 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D Rfer_1787 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D Rfer_1788 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Rfer_1328 Tryptophan synthase, beta chain-like K06001 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D Rfer_1569 prephenate dehydratase / chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D Rfer_1568 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_2615 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_1408 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2947 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2174 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:rfr00410]
D Rfer_3032 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Rfer_4164 putative aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Rfer_0592 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3034 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Rfer_0158 Amidase, hydantoinase/carbamoylase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rfer_0165 Amidase, hydantoinase/carbamoylase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rfer_0373 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_3838 acyl-CoA dehydrogenase-like K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D Rfer_2049 Malonyl-CoA decarboxylase K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9]
D Rfer_0372 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:rfr00430]
D Rfer_3386 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rfer_4054 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D Rfer_1509 glutamate dehydrogenase (NAD) K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D Rfer_2974 Phosphate butyryltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_0262 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D Rfer_2975 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:rfr00440]
D Rfer_0143 phosphonate metabolism K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D Rfer_0145 phosphonate metabolism PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D Rfer_0144 phosphonate metabolism K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D Rfer_0140 Phosphonate C-P lyase system, PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D Rfer_0139 Phosphonate metabolism PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D Rfer_0142 phosphonate metabolism PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
C 00450 Selenocompound metabolism [PATH:rfr00450]
D Rfer_2294 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D Rfer_0460 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rfer_0466 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rfer_3649 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Rfer_4139 Methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D Rfer_1863 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D Rfer_3179 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Rfer_2462 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D Rfer_2460 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rfer_2459 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rfer_1613 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Rfer_2844 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Rfer_0940 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Rfer_3275 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rfr00460]
D Rfer_1113 glycoside hydrolase, family 3-like K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rfer_1102 beta-glucosidase. Glycosyl Hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Rfer_1111 Beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Rfer_3386 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rfer_2993 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D Rfer_3101 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Rfer_3409 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Rfer_2658 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rfr00470]
D Rfer_0488 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rfer_1037 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_1546 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_3423 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rfer_3727 Aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D Rfer_2597 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Rfer_3108 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D Rfer_0929 D-serine deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D Rfer_0964 D-serine deaminase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D Rfer_3444 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D Rfer_2916 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Rfer_0700 Orn/DAP/Arg decarboxylase 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D Rfer_3888 beta-lysine 5,6-aminomutase alpha subunit / D-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3]
D Rfer_3887 beta-lysine 5,6-aminomutase beta subunit / D-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3]
D Rfer_4053 FAD dependent oxidoreductase K19746 dauA; D-arginine dehydrogenase [EC:1.4.99.6]
D Rfer_0240 FAD dependent oxidoreductase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D Rfer_1987 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:rfr00480]
D Rfer_3386 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rfer_0870 LamB/YcsF K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D Rfer_0130 LamB/YcsF K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D Rfer_0763 Glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rfer_3571 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D Rfer_0765 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D Rfer_2116 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Rfer_2703 alanyl aminopeptidase. Metallo peptidase. MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rfer_3112 putative glutathione S-transferase P subunit K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_3730 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_0047 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_4050 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_1089 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_3267 glutathione S-transferase-like K04097 HPGDS; prostaglandin-H2 D-isomerase / glutathione transferase [EC:5.3.99.2 2.5.1.18]
D Rfer_2761 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D Rfer_4033 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D Rfer_1125 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rfer_4034 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rfer_0484 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D Rfer_3785 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D Rfer_2633 Spermidine synthase-like K00797 speE; spermidine synthase [EC:2.5.1.16]
D Rfer_0785 putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
D Rfer_1106 glycoside hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis [PATH:rfr00540]
D Rfer_2000 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Rfer_3414 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Rfer_1998 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Rfer_1344 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Rfer_2001 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Rfer_3155 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Rfer_4237 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Rfer_2649 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Rfer_4236 Phosphatase kdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Rfer_3157 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Rfer_1242 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Rfer_2997 Three-deoxy-D-manno-octulosonic-acid transferase-like K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Rfer_3881 putative acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rfer_3188 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rfer_3874 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rfer_1245 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rfer_1562 D-alpha,beta-D-heptose 7-phosphate 1-kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D Rfer_3694 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Rfer_4052 RfaE bifunctional protein, domain II K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D Rfer_1561 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D Rfer_2998 Lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D Rfer_0508 Lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rfr00541]
D Rfer_0713 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D Rfer_0656 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D Rfer_2677 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rfer_0715 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rfer_2678 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rfer_1252 conserved hypothetical protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rfer_0714 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Rfer_1250 Nucleotidyl transferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D Rfer_1251 NAD-dependent epimerase/dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D Rfer_3299 oxidoreductase FAD/NAD(P)-binding K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D Rfer_1122 mannose-6-phosphate isomerase, type II K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D Rfer_0711 mannose-1-phosphate guanylyltransferase (GDP) K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D Rfer_2999 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D Rfer_1237 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D Rfer_1235 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D Rfer_1083 UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D Rfer_0663 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Rfer_2679 polysaccharide biosynthesis protein CapD K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D Rfer_0667 UDP-glucose/GDP-mannose dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D Rfer_1238 WxcM-like K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:rfr00550]
D Rfer_2944 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rfer_2691 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rfer_3424 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Rfer_3430 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rfer_3423 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rfer_3429 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Rfer_2675 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Rfer_1829 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rfer_1745 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rfer_3428 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rfer_3425 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Rfer_3419 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rfer_2918 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_0917 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_4058 glycosyl transferase, family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_3920 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Rfer_3431 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rfer_0920 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rfer_3801 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rfer_0191 D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS family S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:rfr00552]
D Rfer_1829 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rfer_1745 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rfer_2679 polysaccharide biosynthesis protein CapD K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:rfr00543]
D Rfer_2500 membrane bound O-acyl transferase, MBOAT K19294 algI; alginate O-acetyltransferase complex protein AlgI
D Rfer_0672 glycosyl transferase, group 1 K21001 pslH; polysaccharide biosynthesis protein PslH
D Rfer_2890 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D Rfer_1261 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rfr00730]
D Rfer_1708 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D Rfer_2470 Phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D Rfer_2177 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rfer_2464 FAD dependent oxidoreductase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D Rfer_2875 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Rfer_2466 thiazole biosynthesis K03149 thiG; thiazole synthase [EC:2.8.1.10]
D Rfer_2472 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Rfer_2467 Thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Rfer_2471 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D Rfer_0529 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D Rfer_1409 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Rfer_3158 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:rfr00740]
D Rfer_2668 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Rfer_2666 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Rfer_2669 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D Rfer_2667 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D Rfer_1433 riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D Rfer_1780 NADPH-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D Rfer_2617 cob(II)yrinic acid a,c-diamide reductase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79]
D Rfer_2472 Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D Rfer_1507 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D Rfer_0133 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:rfr00750]
D Rfer_2059 Pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D Rfer_0919 Glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D Rfer_1570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D Rfer_2962 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D Rfer_1752 Pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D Rfer_1913 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:rfr00760]
D Rfer_3031 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D Rfer_1319 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D Rfer_1318 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D Rfer_0827 Nicotinate phosphoribosyltransferase related K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D Rfer_0734 5-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D Rfer_2782 3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D Rfer_2078 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D Rfer_1699 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D Rfer_0076 CinA-like K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D Rfer_0828 isochorismatase hydrolase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D Rfer_1651 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D Rfer_3754 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D Rfer_3753 NAD(P) transhydrogenase, beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D Rfer_0598 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:rfr00770]
D Rfer_0882 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3322 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3509 thiamine pyrophosphate enzyme-like TPP binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D Rfer_3323 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D Rfer_3324 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D Rfer_1921 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D Rfer_3033 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D Rfer_3034 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D Rfer_3614 putative transcriptional acitvator, Baf K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D Rfer_2647 Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D Rfer_1667 Coenzyme A biosynthesis protein K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D Rfer_2905 Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D Rfer_1753 holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D Rfer_0506 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rfer_0158 Amidase, hydantoinase/carbamoylase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rfer_0165 Amidase, hydantoinase/carbamoylase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D Rfer_3032 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Rfer_4164 putative aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:rfr00780]
D Rfer_1679 hypothetical protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D Rfer_3984 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rfer_3977 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rfer_1734 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_3139 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_3999 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_4001 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_1638 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3586 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_1732 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3994 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3195 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_4047 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_1999 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rfer_4002 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rfer_2127 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Rfer_2292 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D Rfer_3953 Biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rfr00785]
D Rfer_3935 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D Rfer_3934 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D Rfer_3968 biotin/lipoate A/B protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2212 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_3650 2-oxo-acid dehydrogenase E1 component, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D Rfer_0387 Pyruvate dehydrogenase (lipoamide) K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D Rfer_0386 Transketolase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D Rfer_2213 Dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_0385 catalytic domain of components of various dehydrogenase complexes K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D Rfer_2321 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D Rfer_2320 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D Rfer_3554 branched-chain alpha-keto acid dehydrogenase E1 component K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D Rfer_3553 branched-chain alpha-keto acid dehydrogenase E1 component K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D Rfer_3552 branched-chain alpha-keto acid dehydrogenase E2 component K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D Rfer_3021 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D Rfer_3019 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rfer_3020 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:rfr00790]
D Rfer_1301 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D Rfer_1326 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D Rfer_1298 NUDIX hydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D Rfer_0814 Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D Rfer_2508 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D Rfer_2012 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D Rfer_2985 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Rfer_2686 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D Rfer_2668 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D Rfer_3314 Anthranilate synthase component I and chorismate binding protein K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D Rfer_2613 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Rfer_1410 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Rfer_2614 Organic radical activating enzymes-like K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Rfer_0736 ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Rfer_2370 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Rfer_1468 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Rfer_4040 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Rfer_1917 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Rfer_2889 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Rfer_1466 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Rfer_1915 MoeA-like, domain I and II K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D Rfer_0867 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D Rfer_1467 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:rfr00670]
D Rfer_2985 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D Rfer_2209 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D Rfer_2658 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D Rfer_1649 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D Rfer_1582 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rfer_3859 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Rfer_3019 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D Rfer_0460 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rfer_0466 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rfer_2986 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rfer_1063 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D Rfer_0609 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D Rfer_0654 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D Rfer_1087 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rfr00860]
D Rfer_2681 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rfer_1281 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D Rfer_1369 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Rfer_3805 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Rfer_1715 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D Rfer_1716 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D Rfer_0821 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D Rfer_2077 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D Rfer_1938 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D Rfer_4072 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D Rfer_3804 conserved hypothetical protein 701 K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D Rfer_1545 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D Rfer_1717 protein of unknown function DUF513, hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Rfer_2883 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D Rfer_1689 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rfer_1688 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rfer_2113 cobalamin (vitamin B12) biosynthesis CbiX protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D Rfer_2624 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D Rfer_4278 ATPase associated with various cellular activities, AAA_5 K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D Rfer_1478 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rfer_2618 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rfer_2612 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D Rfer_2616 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Rfer_1407 putative membrane protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D Rfer_2622 adenosylcobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D Rfer_2610 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D Rfer_2611 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D Rfer_2609 Phosphoglycerate mutase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rfr00130]
D Rfer_0270 4-hydroxybenzoyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D Rfer_3015 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D Rfer_3680 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Rfer_0132 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D Rfer_0133 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Rfer_2828 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D Rfer_1291 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D Rfer_0731 putative ubiquinone biosynthesis monooxygenase COQ7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D Rfer_0061 Phenylacetic acid degradation-related protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D Rfer_2434 NAD(P)H dehydrogenase (quinone) K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Rfer_2573 putative flavodoxin K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Rfer_0277 NmrA-like K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D Rfer_1765 NmrA-like K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rfr00900]
D Rfer_2875 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D Rfer_1994 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D Rfer_1332 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D Rfer_1659 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D Rfer_2307 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D Rfer_3248 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0133 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Rfer_2876 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Rfer_1267 Farnesyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Rfer_2675 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Rfer_1411 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:rfr00906]
D Rfer_1549 farnesyl-diphosphate farnesyltransferase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:rfr00903]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_2416 Alpha/beta hydrolase fold-3 K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00907 Pinene, camphor and geraniol degradation [PATH:rfr00907]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_3507 short-chain dehydrogenase/reductase SDR K13774 atuB; citronellol/citronellal dehydrogenase
D Rfer_2817 acyl-CoA dehydrogenase-like K11731 atuD; citronellyl-CoA dehydrogenase [EC:1.3.99.-]
D Rfer_2815 Carbamoyl-phosphate synthase L chain, ATP-binding K13777 atuF; geranyl-CoA carboxylase alpha subunit [EC:6.4.1.5]
D Rfer_2818 Propionyl-CoA carboxylase K13778 atuC; geranyl-CoA carboxylase beta subunit [EC:6.4.1.5]
D Rfer_2816 Enoyl-CoA hydratase/isomerase K13779 atuE; isohexenylglutaconyl-CoA hydratase [EC:4.2.1.57]
D Rfer_3824 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rfer_4199 hydroxymethylglutaryl-CoA lyase K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D Rfer_3516 Acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_4205 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D Rfer_4112 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:rfr00523]
D Rfer_2677 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rfer_0715 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rfer_2678 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rfer_1252 conserved hypothetical protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rfer_0714 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D Rfer_1260 NAD-dependent epimerase/dehydratase K17947 wbiB; dTDP-L-rhamnose 4-epimerase [EC:5.1.3.25]
C 01054 Nonribosomal peptide structures [PATH:rfr01054]
D Rfer_3108 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D Rfer_0715 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rfr00946]
D Rfer_1113 glycoside hydrolase, family 3-like K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rfer_1102 beta-glucosidase. Glycosyl Hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Rfer_1111 Beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D Rfer_1547 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:rfr00332]
D Rfer_1271 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D Rfer_0761 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:rfr00261]
D Rfer_2460 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D Rfer_2459 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D Rfer_1353 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D Rfer_1792 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D Rfer_1636 dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rfer_2097 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rfer_1026 2-dehydro-3-deoxy-L-arabinonate dehydratase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D Rfer_0755 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rfr00521]
D Rfer_1121 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D Rfer_1145 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D Rfer_2892 Inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D Rfer_2677 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rfer_0715 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D Rfer_2678 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rfer_1252 conserved hypothetical protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D Rfer_0714 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D Rfer_1121 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:rfr00525]
D Rfer_2677 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D Rfer_0715 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:rfr00401]
D Rfer_1568 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_2615 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_1408 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2947 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2174 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
D Rfer_1114 tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
C 00405 Phenazine biosynthesis
D Rfer_3607 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rfer_3605 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D Rfer_1849 (Acyl-carrier protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rfer_1731 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rfer_1638 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3586 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_1732 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3994 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3195 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_4047 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_2127 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D Rfer_1733 acyl carrier protein K02078 acpP; acyl carrier protein
D Rfer_3980 hypothetical protein K02078 acpP; acyl carrier protein
D Rfer_0384 phosphopantetheine-binding K02078 acpP; acyl carrier protein
D Rfer_0698 conserved hypothetical protein K02078 acpP; acyl carrier protein
D Rfer_3978 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rfr00999]
D Rfer_3880 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D Rfer_3413 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D Rfer_1113 glycoside hydrolase, family 3-like K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D Rfer_1102 beta-glucosidase. Glycosyl Hydrolase family 1 K05350 bglB; beta-glucosidase [EC:3.2.1.21]
D Rfer_1111 Beta-glucosidase K05350 bglB; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rfr00362]
D Rfer_1036 3-oxoacid CoA-transferase, subunit A K01031 pcaI; 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
D Rfer_1035 butyryl-CoA:acetate CoA transferase K01032 pcaJ; 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
D Rfer_3516 Acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_4205 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_1034 Beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D Rfer_0226 Beta-ketoadipyl CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
D Rfer_0454 pyruvate carboxyltransferase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D Rfer_0455 Semialdehyde dehydrogenase, NAD - binding K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
D Rfer_1809 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rfer_0014 fumarate lyase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D Rfer_3487 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D Rfer_2441 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D Rfer_0295 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rfer_0331 Protocatechuate 4,5-dioxygenase K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rfer_0294 Protocatechuate 4,5-dioxygenase K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rfer_0330 Protocatechuate 4,5-dioxygenase K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rfer_0329 oxidoreductase-like K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D Rfer_0332 amidohydrolase 2 K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D Rfer_0338 amidohydrolase 2 K10220 ligJ; 4-oxalmesaconate hydratase [EC:4.2.1.83]
D Rfer_0337 Dimethylmenaquinone methyltransferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D Rfer_0339 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
D Rfer_0270 4-hydroxybenzoyl-CoA thioesterase K01075 E3.1.2.23; 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
D Rfer_0216 benzoate-CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D Rfer_3517 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_2386 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_2595 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D Rfer_4070 acyl-CoA dehydrogenase-like K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_0224 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rfer_2272 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0222 benzoyl-CoA oxygenase, component A K15511 boxA; benzoyl-CoA 2,3-epoxidase subunit A [EC:1.14.13.208]
D Rfer_0228 benzoyl-CoA oxygenase, component B K15512 boxB; benzoyl-CoA 2,3-epoxidase subunit B [EC:1.14.13.208]
D Rfer_0221 benzoyl-CoA oxygenase, component B K15512 boxB; benzoyl-CoA 2,3-epoxidase subunit B [EC:1.14.13.208]
D Rfer_0217 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase K15514 boxD; 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase [EC:1.2.1.77]
D Rfer_0220 2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme K15513 boxC; benzoyl-CoA-dihydrodiol lyase [EC:4.1.2.44]
C 00627 Aminobenzoate degradation [PATH:rfr00627]
D Rfer_1453 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D Rfer_0216 benzoate-CoA ligase K04110 badA; benzoate-CoA ligase [EC:6.2.1.25]
D Rfer_0133 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D Rfer_0280 Rieske (2Fe-2S) protein K03862 vanA; vanillate monooxygenase [EC:1.14.13.82]
D Rfer_0281 ferredoxin K03863 vanB; vanillate monooxygenase ferredoxin subunit
D Rfer_0295 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rfer_0331 Protocatechuate 4,5-dioxygenase K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rfer_0294 Protocatechuate 4,5-dioxygenase K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rfer_0330 Protocatechuate 4,5-dioxygenase K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rfer_0329 oxidoreductase-like K10219 ligC; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
D Rfer_0332 amidohydrolase 2 K10221 ligI; 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
C 00364 Fluorobenzoate degradation [PATH:rfr00364]
D Rfer_3313 Twin-arginine translocation pathway signal K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rfer_3810 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:rfr00625]
D Rfer_2286 CMP/dCMP deaminase, zinc-binding K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D Rfer_2865 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Rfer_0121 Alcohol dehydrogenase, zinc-binding K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D Rfer_1025 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3585 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_0986 Betaine-aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D Rfer_3582 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:rfr00361]
D Rfer_2286 CMP/dCMP deaminase, zinc-binding K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D Rfer_3313 Twin-arginine translocation pathway signal K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rfer_3810 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rfer_3582 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation [PATH:rfr00623]
D Rfer_3313 Twin-arginine translocation pathway signal K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
D Rfer_3810 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation [PATH:rfr00622]
D Rfer_1809 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rfer_0454 pyruvate carboxyltransferase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D Rfer_0455 Semialdehyde dehydrogenase, NAD - binding K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
C 00633 Nitrotoluene degradation [PATH:rfr00633]
D Rfer_0404 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D Rfer_0476 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D Rfer_0306 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D Rfer_1813 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D Rfer_4091 nickel-dependent hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Rfer_4088 hydrogenase (NiFe) small subunit (hydA) K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Rfer_4121 Hydrogen:quinone oxidoreductase K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D Rfer_4120 uptake hydrogenase accessory protein HupU K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
D Rfer_2186 pyruvate ferredoxin oxidoreductase, alpha subunit K00169 porA; pyruvate ferredoxin oxidoreductase alpha subunit [EC:1.2.7.1]
D Rfer_2185 pyruvate ferredoxin oxidoreductase, beta subunit K00170 porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]
D Rfer_2187 pyruvate ferredoxin oxidoreductase, gamma subunit K00172 porC; pyruvate ferredoxin oxidoreductase gamma subunit [EC:1.2.7.1]
C 00642 Ethylbenzene degradation
D Rfer_3516 Acetyl-CoA C-acyltransferase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D Rfer_4205 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:rfr00643]
D Rfer_0613 fumarylacetoacetate (FAA) hydrolase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D Rfer_0767 propionate CoA-transferase K01026 pct; propionate CoA-transferase [EC:2.8.3.1]
C 00791 Atrazine degradation [PATH:rfr00791]
D Rfer_0127 Allophanate hydrolase subunit 1 K01941 E6.3.4.6; urea carboxylase [EC:6.3.4.6]
D Rfer_3402 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D Rfer_3400 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D Rfer_3399 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:rfr00930]
D Rfer_2416 Alpha/beta hydrolase fold-3 K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D Rfer_1573 short chain enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17]
D Rfer_2754 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:rfr00621]
D Rfer_1809 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D Rfer_0454 pyruvate carboxyltransferase K18365 bphI; 4-hydroxy-2-oxovalerate/4-hydroxy-2-oxohexanoate aldolase [EC:4.1.3.39 4.1.3.43]
D Rfer_0455 Semialdehyde dehydrogenase, NAD - binding K18366 bphJ; acetaldehyde/propanal dehydrogenase [EC:1.2.1.10 1.2.1.87]
C 00626 Naphthalene degradation [PATH:rfr00626]
D Rfer_2865 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D Rfer_0121 Alcohol dehydrogenase, zinc-binding K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
D Rfer_0295 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rfer_0331 Protocatechuate 4,5-dioxygenase K04100 ligA; protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
D Rfer_0294 Protocatechuate 4,5-dioxygenase K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
D Rfer_0330 Protocatechuate 4,5-dioxygenase K04101 ligB; protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
C 00365 Furfural degradation
C 00984 Steroid degradation
D Rfer_0318 glucose-methanol-choline oxidoreductase K03333 choD; cholesterol oxidase [EC:1.1.3.6]
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rfr03020]
D Rfer_3592 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rfer_3591 DNA-directed RNA polymerase, subunit beta-prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rfer_4217 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rfer_3148 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rfr03010]
D Rfer_1566 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D Rfer_1989 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Rfer_3789 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Rfer_4218 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Rfer_4226 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Rfer_2193 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Rfer_3799 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Rfer_4229 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Rfer_0722 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Rfer_3796 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Rfer_4219 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Rfer_3800 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Rfer_4220 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Rfer_4230 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Rfer_1488 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Rfer_1402 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Rfer_3786 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Rfer_2195 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Rfer_3791 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Rfer_2122 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Rfer_2885 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Rfer_3595 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Rfer_3792 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Rfer_3795 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Rfer_3794 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Rfer_4231 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Rfer_4228 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Rfer_3593 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Rfer_2196 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Rfer_3594 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Rfer_3596 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Rfer_0721 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Rfer_4233 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Rfer_4224 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Rfer_3788 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Rfer_4216 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Rfer_4227 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Rfer_1405 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Rfer_1339 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Rfer_1268 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Rfer_3790 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Rfer_3793 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Rfer_4232 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Rfer_1661 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Rfer_1269 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Rfer_3180 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Rfer_3787 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Rfer_4225 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Rfer_2900 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Rfer_1728 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Rfer_3181 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Rfer_4245 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Rfer_1338 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Rfer_4221 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Rfer_R0053 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rfer_R0058 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rfer_R0050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rfer_R0055 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rfer_R0049 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rfer_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rfr00970]
D Rfer_R0032 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0002 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0051 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0056 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0034 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0001 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0008 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Rfer_R0030 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Rfer_R0014 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rfer_R0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rfer_R0031 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rfer_R0003 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rfer_R0013 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rfer_R0047 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rfer_R0024 tRNA-His K14226 tRNA-His; tRNA His
D Rfer_R0052 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rfer_R0057 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rfer_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0012 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0040 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rfer_R0035 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rfer_R0016 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rfer_R0059 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rfer_R0044 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Rfer_R0004 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rfer_R0005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rfer_R0025 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rfer_R0006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0041 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0021 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0046 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rfer_R0037 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rfer_R0033 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rfer_R0045 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Rfer_R0048 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Rfer_R0023 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rfer_R0022 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rfer_R0027 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rfer_2681 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rfer_1988 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rfer_0989 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rfer_3925 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rfer_3926 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Rfer_3924 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Rfer_1823 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rfer_0590 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rfer_1297 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rfer_3696 Glycine--tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Rfer_3695 Glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Rfer_1336 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Rfer_3243 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rfer_0940 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D Rfer_1349 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rfer_3275 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rfer_3859 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D Rfer_2376 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rfer_0758 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rfer_1432 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rfer_1784 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rfer_0773 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rfer_1274 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Rfer_2306 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rfer_1340 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rfer_1341 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rfer_0728 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rfer_3240 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rfr03060]
D Rfer_4223 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Rfer_3598 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Rfer_1492 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Rfer_3866 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Rfer_3865 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Rfer_3867 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Rfer_4242 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rfer_2911 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rfer_1312 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Rfer_3342 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rfer_R0009 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D Rfer_1672 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rfer_3664 arsenite-activated ATPase (arsA) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Rfer_2956 twin-arginine translocation protein, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D Rfer_2957 twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D Rfer_2958 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D Rfer_1741 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rfer_1431 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rfr04122]
D Rfer_2177 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rfer_2880 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D Rfer_2377 SirA-like K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Rfer_3756 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Rfer_1917 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D Rfer_1468 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D Rfer_1916 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein
D Rfer_2848 thiamineS K03636 moaD; sulfur-carrier protein
D Rfer_1307 UBA/THIF-type NAD/FAD binding protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D Rfer_4040 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D Rfer_2889 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D Rfer_2465 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:rfr03018]
D Rfer_1273 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Rfer_1720 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D Rfer_2650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rfer_1489 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Rfer_2169 DEAD/DEAH box helicase-like K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rfer_3028 DEAD/DEAH box helicase-like K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rfer_3579 DEAD/DEAH box helicase-like K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rfer_1976 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Rfer_0407 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rfer_0459 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rfer_2899 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Rfer_0832 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D Rfer_1969 Chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rfer_1131 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_3009 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_2302 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Rfer_2017 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Rfer_2509 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rfr03030]
D Rfer_2183 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2572 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_3777 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2040 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rfer_1457 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rfer_2256 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rfer_0760 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rfer_2117 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rfer_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_4311 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_2580 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Rfer_2203 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Rfer_3772 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Rfer_4275 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Rfer_1464 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Rfer_2002 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Rfer_1325 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rfer_2201 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rfr03410]
D Rfer_2607 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Rfer_3600 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Rfer_1654 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Rfer_1656 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rfer_1350 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rfer_3000 DNA-3-methyladenine glycosylase II / Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rfer_0187 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Rfer_3929 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rfer_2983 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rfer_1325 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rfer_3234 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rfer_2201 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rfr03420]
D Rfer_1331 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Rfer_3814 UvrA family protein K03701 uvrA; excinuclease ABC subunit A
D Rfer_3774 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Rfer_2175 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Rfer_2244 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Rfer_3035 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rfer_1325 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rfer_2201 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rfr03430]
D Rfer_1832 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Rfer_3308 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Rfer_3035 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rfer_2072 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D Rfer_3152 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Rfer_2877 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Rfer_3234 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rfer_3772 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Rfer_4275 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Rfer_2040 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rfer_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_4311 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_1457 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rfer_0760 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rfer_2256 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rfer_2183 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2572 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_3777 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2117 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rfer_2201 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rfer_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:rfr03440]
D Rfer_3234 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rfer_3772 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Rfer_4275 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Rfer_1751 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Rfer_1459 recombination protein RecR K06187 recR; recombination protein RecR
D Rfer_3948 recA protein K03553 recA; recombination protein RecA
D Rfer_1325 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rfer_0739 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Rfer_0820 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Rfer_3417 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Rfer_3688 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Rfer_2040 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rfer_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_4311 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_1457 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rfer_0760 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rfer_2256 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rfer_2183 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2572 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_3777 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2117 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rfer_0822 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Rfer_2194 putative primosomal replication protein K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
D Rfer_4361 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:rfr03250]
D Rfer_1346 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rfr02010]
D Rfer_1762 Thiosulphate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Rfer_1781 Thiosulphate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rfer_1761 Sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rfer_1760 Sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rfer_1759 Sulphate transport system permease protein 1 K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rfer_2867 putative exported protein K05772 tupA; tungstate transport system substrate-binding protein
D Rfer_2869 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Rfer_2868 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Rfer_3742 Twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rfer_2554 twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rfer_3741 nitrate transport permease K15577 nrtB; nitrate/nitrite transport system permease protein
D Rfer_2555 nitrate transport permease K15577 nrtB; nitrate/nitrite transport system permease protein
D Rfer_2556 nitrate transport ATP-binding subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rfer_3740 ABC transporter related K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rfer_1779 ABC transporter, substrate-binding protein, aliphatic sulphonates K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1778 ABC transporter, substrate-binding protein, aliphatic sulphonates K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_3116 ABC transporter, substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1460 Twin-arginine translocation pathway signal K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_2748 extracellular solute-binding protein, family 3 K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_3118 ABC transporter, substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1776 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_3114 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_2746 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_1775 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_2747 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_3115 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_0340 putative ABC transporter, periplasmic molybdate binding protein K02020 modA; molybdate transport system substrate-binding protein
D Rfer_2858 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Rfer_2859 Molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D Rfer_2860 Molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Rfer_2758 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Rfer_1594 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Rfer_1595 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Rfer_3246 ABC transporter periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D Rfer_3245 binding-protein-dependent transport systems inner membrane component K02063 thiP; thiamine transport system permease protein
D Rfer_3244 ABC transporter related K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D Rfer_3222 extracellular solute-binding protein, family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Rfer_3225 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein
D Rfer_3224 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein
D Rfer_3223 ABC transporter related K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Rfer_0352 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein
D Rfer_0355 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein
D Rfer_0354 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D Rfer_0353 spermidine/putrescine ABC transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D Rfer_1854 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Rfer_1855 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Rfer_1857 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Rfer_1856 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Rfer_1103 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_0955 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_1094 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_1107 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_1099 extracellular solute-binding protein, family 1 K10240 cebE; cellobiose transport system substrate-binding protein
D Rfer_1100 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein
D Rfer_1101 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D Rfer_2063 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_2939 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_0810 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_3630 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_2937 Mammalian cell entry related K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rfer_3915 Mammalian cell entry related K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rfer_1223 ABC-type transport system periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rfer_2936 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rfer_3917 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rfer_1224 ABC-type transport system ipermease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS K07122 mlaB; phospholipid transport system transporter-binding protein
D Rfer_2935 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rfer_3916 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rfer_3163 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Rfer_3296 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Rfer_3165 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Rfer_3164 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Rfer_3166 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Rfer_1097 extracellular solute-binding protein, family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein
D Rfer_1110 extracellular solute-binding protein, family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein
D Rfer_1109 binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein
D Rfer_1096 binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein
D Rfer_1108 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D Rfer_1095 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D Rfer_0438 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Rfer_3131 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Rfer_3130 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D Rfer_0123 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D Rfer_0439 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D Rfer_3129 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rfer_0124 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rfer_0437 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rfer_1903 periplasmic binding protein/LacI transcriptional regulator K10552 frcB; fructose transport system substrate-binding protein
D Rfer_1902 inner-membrane translocator K10553 frcC; fructose transport system permease protein
D Rfer_1901 ABC transporter related K10554 frcA; fructose transport system ATP-binding protein
D Rfer_3671 extracellular solute-binding protein, family 1 K17321 glpV; glycerol transport system substrate-binding protein
D Rfer_3674 binding-protein-dependent transport systems inner membrane component K17322 glpP; glycerol transport system permease protein
D Rfer_3673 binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein
D Rfer_3676 ABC transporter related K17324 glpS; glycerol transport system ATP-binding protein
D Rfer_3675 ABC transporter related K17325 glpT; glycerol transport system ATP-binding protein
D Rfer_1287 extracellular solute-binding protein, family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D Rfer_1286 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D Rfer_1285 Twin-arginine translocation pathway signal K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D Rfer_1284 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D Rfer_0583 Periplasmic phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Rfer_0582 Phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D Rfer_0581 Phosphate transport system permease protein 2 K02038 pstA; phosphate transport system permease protein
D Rfer_0580 Phosphate transport system permease protein 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Rfer_0184 Phosphonate-binding periplasmic protein K02044 phnD; phosphonate transport system substrate-binding protein
D Rfer_1615 Phosphonate-binding periplasmic protein K02044 phnD; phosphonate transport system substrate-binding protein
D Rfer_1617 Phosphonate uptake transporter K02042 phnE; phosphonate transport system permease protein
D Rfer_1618 Phosphonate uptake transporter K02042 phnE; phosphonate transport system permease protein
D Rfer_0183 Phosphonate uptake transporter K02042 phnE; phosphonate transport system permease protein
D Rfer_0185 Phosphonate ABC transporter PhnC, ATP-binding K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rfer_1616 ABC transporter related K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rfer_2324 extracellular solute-binding protein, family 3 K09969 aapJ; general L-amino acid transport system substrate-binding protein
D Rfer_2325 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K09970 aapQ; general L-amino acid transport system permease protein
D Rfer_2326 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K09971 aapM; general L-amino acid transport system permease protein
D Rfer_2327 ABC transporter related K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_1525 extracellular solute-binding protein, family 3 K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D Rfer_1523 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K10023 aotM; arginine/ornithine transport system permease protein
D Rfer_1524 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K10024 aotQ; arginine/ornithine transport system permease protein
D Rfer_1521 ABC transporter related K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_1077 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0214 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0269 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0288 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1487 putative transporter signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2119 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2392 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_4065 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3230 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2391 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1838 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3504 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3538 conserved hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1012 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0371 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2589 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2810 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1005 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1078 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0213 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0268 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0289 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_2390 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3172 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_2588 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_4063 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1003 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1837 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3499 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3540 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1013 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0212 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_0267 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0290 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_2389 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_3171 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_4064 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1004 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1079 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1836 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3500 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_3539 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_2587 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1014 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1075 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0211 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0291 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_2388 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3170 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_2586 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1001 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3501 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3541 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_4062 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1015 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1076 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0210 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0266 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0292 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_2387 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3169 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_4066 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1002 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1835 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3502 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3537 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_2585 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1770 Lipoprotein YaeC K02073 metQ; D-methionine transport system substrate-binding protein
D Rfer_1771 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Rfer_1772 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Rfer_3381 twin-arginine translocation pathway signal K11959 urtA; urea transport system substrate-binding protein
D Rfer_3380 inner-membrane translocator K11960 urtB; urea transport system permease protein
D Rfer_3379 inner-membrane translocator K11961 urtC; urea transport system permease protein
D Rfer_3378 ABC transporter related K11962 urtD; urea transport system ATP-binding protein
D Rfer_3377 ABC transporter related K11963 urtE; urea transport system ATP-binding protein
D Rfer_1949 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein
D Rfer_1953 binding-protein-dependent transport systems inner membrane component K12369 dppB; dipeptide transport system permease protein
D Rfer_1952 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D Rfer_1951 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K12371 dppD; dipeptide transport system ATP-binding protein
D Rfer_1950 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K12372 dppF; dipeptide transport system ATP-binding protein
D Rfer_3103 extracellular solute-binding protein, family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D Rfer_3104 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein
D Rfer_3105 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein
D Rfer_3102 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K13892 gsiA; glutathione transport system ATP-binding protein
D Rfer_2128 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein
D Rfer_2129 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D Rfer_2130 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D Rfer_2131 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein
D Rfer_3557 ABC-2 type transporter, NodJ family K09694 nodJ; lipooligosaccharide transport system permease protein
D Rfer_3558 ABC transporter related K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D Rfer_3232 Lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Rfer_3231 Lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Rfer_0042 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D
D Rfer_0043 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D Rfer_0044 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D Rfer_0045 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Rfer_2115 permease YjgP/YjgQ K07091 lptF; lipopolysaccharide export system permease protein
D Rfer_2114 permease YjgP/YjgQ K11720 lptG; lipopolysaccharide export system permease protein
D Rfer_0777 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Rfer_3202 putative transmembrane protein K19341 nosY; Cu-processing system permease protein
D Rfer_3201 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein
D Rfer_2090 Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Rfer_2722 ABC transporter related K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rfer_3493 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Rfer_3770 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Rfer_0735 ABC transporter-like K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D Rfer_3826 ABC transporter related K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:rfr02060]
D Rfer_0603 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Rfer_0602 HPrNtr K02784 ptsH; phosphocarrier protein HPr
D Rfer_0601 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Rfer_0751 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:rfr03070]
D Rfer_2604 Type I secretion outer membrane protein, TolC K12340 tolC; outer membrane protein
D Rfer_2714 Type I secretion membrane fusion protein, HlyD K11003 hlyD; membrane fusion protein, hemolysin D
D Rfer_2722 ABC transporter related K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rfer_0542 type II and III secretion system protein K02453 gspD; general secretion pathway protein D
D Rfer_0533 hypothetical protein K02452 gspC; general secretion pathway protein C
D Rfer_0544 General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D Rfer_0534 General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D Rfer_0535 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D Rfer_0536 General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D Rfer_0537 methylation K02459 gspJ; general secretion pathway protein J
D Rfer_0538 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D Rfer_0539 hypothetical protein K02461 gspL; general secretion pathway protein L
D Rfer_0540 hypothetical protein K02462 gspM; general secretion pathway protein M
D Rfer_0543 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rfer_3214 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rfer_4246 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rfer_3866 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Rfer_3865 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Rfer_3598 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Rfer_1492 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Rfer_4223 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Rfer_3867 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Rfer_4242 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rfer_2911 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rfer_1672 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rfer_1312 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Rfer_3342 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rfer_2956 twin-arginine translocation protein, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D Rfer_2957 twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D Rfer_2958 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rfr02020]
D Rfer_0577 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Rfer_0578 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Rfer_3778 response regulator receiver domain protein K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Rfer_1326 Alkaline phosphatase K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D Rfer_0583 Periplasmic phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Rfer_3684 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Rfer_3685 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Rfer_2733 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Rfer_2732 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D Rfer_0509 periplasmic sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D Rfer_3822 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_1739 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_0423 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D Rfer_0422 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D Rfer_0412 Secretion protein HlyD K07798 cusB; membrane fusion protein, copper/silver efflux system
D Rfer_0411 Heavy metal efflux pump CzcA K07787 cusA; copper/silver efflux system protein
D Rfer_0504 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Rfer_0503 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB
D Rfer_3700 flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D Rfer_3701 flagellar regulon master regulator subunit FlhC K02402 flhC; flagellar transcriptional activator FlhC
D Rfer_0630 flagellin-like K02406 fliC; flagellin
D Rfer_0631 flagellin-like K02406 fliC; flagellin
D Rfer_3710 sigma 28 (Flagella/Sporulation) K02405 fliA; RNA polymerase sigma factor FliA
D Rfer_3702 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Rfer_2541 periplasmic sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Rfer_2540 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Rfer_3121 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3951 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3522 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3120 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD
D Rfer_2401 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD
D Rfer_3212 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Rfer_1688 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rfer_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Rfer_2410 Citrate lyase ligase K01910 citC; [citrate (pro-3S)-lyase] ligase [EC:6.2.1.22]
D Rfer_2409 citrate lyase acyl carrier protein K01646 citD; citrate lyase subunit gamma (acyl carrier protein)
D Rfer_1804 putative citrate lyase beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rfer_2408 citrate lyase, beta subunit K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rfer_4179 Citrate lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rfer_3486 HpcH/HpaI aldolase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rfer_4171 Citryl-CoA lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34]
D Rfer_2407 citrate lyase, alpha subunit K01643 citF; citrate lyase subunit alpha / citrate CoA-transferase [EC:2.8.3.10]
D Rfer_2406 Holo-citrate lyase synthase K05964 citX; holo-ACP synthase [EC:2.7.7.61]
D Rfer_2405 Triphosphoribosyl-dephospho-CoA synthase K05966 citG; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D Rfer_3576 anaerobic c4-dicarboxylate membrane transporter family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D Rfer_1711 histidine kinase internal protein K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D Rfer_1712 transcriptional regulator, LytR/AlgR family K08083 algR; two-component system, LytTR family, response regulator AlgR
D Rfer_0673 GDP-mannose 6-dehydrogenase K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D Rfer_1870 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Rfer_1869 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Rfer_0782 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Rfer_2792 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2793 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2795 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2794 respiratory nitrate reductase chaperone NarJ K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D Rfer_0563 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rfer_1539 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rfer_3743 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rfer_0788 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D Rfer_0789 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D Rfer_0792 Flp pilus assembly CpaB K02279 cpaB; pilus assembly protein CpaB
D Rfer_0793 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D Rfer_0798 response regulator receiver domain protein K02282 cpaE; pilus assembly protein CpaE
D Rfer_0799 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rfer_4263 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rfer_0800 type II secretion system protein K12510 tadB; tight adherence protein B
D Rfer_0801 type II secretion system protein K12511 tadC; tight adherence protein C
D Rfer_2422 UTP-GlnB (protein PII) uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D Rfer_1700 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D Rfer_2981 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Rfer_2982 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Rfer_0350 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2979 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_3588 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Rfer_3587 response regulator receiver domain protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D Rfer_3096 periplasmic sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Rfer_0247 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Rfer_2854 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3454 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D Rfer_3453 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D Rfer_1440 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D Rfer_3344 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rfer_3345 two component, sigma54 specific, transcriptional regulator, Fis family K02667 pilR; two-component system, NtrC family, response regulator PilR
D Rfer_0778 sigma-54 (RpoN) K03092 rpoN; RNA polymerase sigma-54 factor
D Rfer_1265 methylation K02650 pilA; type IV pilus assembly protein PilA
D Rfer_2788 periplasmic sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rfer_2786 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D Rfer_4120 uptake hydrogenase accessory protein HupU K23548 hupU; uptake hydrogenase small subunit [EC:1.12.99.6]
D Rfer_4121 Hydrogen:quinone oxidoreductase K23549 hupV; uptake hydrogenase large subunit [EC:1.12.99.6]
D Rfer_4122 PAS/PAC sensor signal transduction histidine kinase K19661 hupT; two-component system, NtrC family, sensor histidine kinase HupT/HoxJ [EC:2.7.13.3]
D Rfer_4102 two component, sigma54 specific, transcriptional regulator, Fis family K19641 hupR; two-component system, NtrC family, response regulator HupR/HoxA
D Rfer_4088 hydrogenase (NiFe) small subunit (hydA) K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D Rfer_4091 nickel-dependent hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D Rfer_0569 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Rfer_0904 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Rfer_3013 MCP methyltransferase, CheR-type K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_0898 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3137 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3610 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3449 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3937 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0925 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3609 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2354 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_1480 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2225 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2507 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0120 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Rfer_0991 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0903 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0568 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_1476 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0924 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0901 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0567 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0899 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_0566 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_3704 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_0571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_0906 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_2357 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_0364 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Rfer_1374 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ
D Rfer_1373 CheW-like protein K02659 pilI; twitching motility protein PilI
D Rfer_1375 CheA signal transduction histidine kinases K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rfer_1371 response regulator receiver domain protein K02657 pilG; twitching motility two-component system response regulator PilG
D Rfer_1372 response regulator receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D Rfer_1485 multi-sensor signal transduction histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rfer_0922 multi-sensor signal transduction histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rfer_1486 two component transcriptional regulator, LuxR family K11712 dctR; two-component system, LuxR family, response regulator DctR
D Rfer_1483 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_1484 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_3481 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_4184 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_4196 TRAP dicarboxylate transporter-DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_4174 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_1482 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_3482 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_4195 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_1481 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_4175 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_0448 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_3483 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_4194 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_0921 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D Rfer_3083 periplasmic sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Rfer_1136 periplasmic sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Rfer_3326 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3025 cyclic nucleotide-binding domain (cNMP-BD) protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_2394 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3511 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3543 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_2964 Ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D Rfer_2965 cytochrome b/b6-like K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Rfer_2966 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D Rfer_4138 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_0762 hypothetical protein K08738 CYC; cytochrome c
D Rfer_2468 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_4085 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_1438 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_2736 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_4077 cytochrome c, class I K08738 CYC; cytochrome c
D Rfer_4127 cytochrome c oxidase, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Rfer_1930 cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D Rfer_4126 cytochrome C oxidase, mono-heme subunit/FixO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Rfer_1931 cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D Rfer_1932 Cbb3-type cytochrome oxidase component K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D Rfer_1933 cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D Rfer_2362 cytochrome bd ubiquinol oxidase, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D Rfer_2363 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D Rfer_2364 Cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D Rfer_2604 Type I secretion outer membrane protein, TolC K12340 tolC; outer membrane protein
D Rfer_0658 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D Rfer_0657 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Rfer_3410 protein tyrosine phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D Rfer_0663 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D Rfer_1104 glycoside hydrolase, family 5 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4]
D Rfer_3712 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:rfr04148]
D Rfer_3884 arginase K01476 E3.5.3.1; arginase [EC:3.5.3.1]
D Rfer_2964 Ubiquinol-cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rfr02024]
D Rfer_2302 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Rfer_3607 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D Rfer_3605 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D Rfer_3367 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rfer_0482 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D Rfer_0504 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Rfer_0503 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB
D Rfer_2788 periplasmic sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rfer_2786 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D Rfer_3700 flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D Rfer_3701 flagellar regulon master regulator subunit FlhC K02402 flhC; flagellar transcriptional activator FlhC
D Rfer_2540 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Rfer_4262 conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC
D Rfer_4261 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D Rfer_4260 Type IV secretory pathway VirB4 components-like K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D Rfer_4259 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D Rfer_4258 hypothetical protein K07344 trbL; type IV secretion system protein TrbL
D Rfer_4254 Type IV secretory pathway component VirB8-like K20531 trbF; type IV secretion system protein TrbF
D Rfer_4253 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG
D Rfer_4252 conjugation TrbI-like protein K20533 trbI; type IV secretion system protein TrbI
D Rfer_0883 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Rfer_0594 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Rfer_3242 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Rfer_0887 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D Rfer_0596 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D Rfer_0888 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D Rfer_0595 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D Rfer_0889 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D Rfer_0593 spermidine/putrescine ABC transporter ATP-binding subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D Rfer_1077 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0214 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0269 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0288 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1487 putative transporter signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2119 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2392 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_4065 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3230 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2391 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1838 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3504 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3538 conserved hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1012 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0371 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2589 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2810 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1005 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1078 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0213 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0268 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0289 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_2390 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3172 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_2588 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_4063 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1003 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1837 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3499 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3540 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1013 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0212 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_0267 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0290 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_2389 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_3171 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_4064 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1004 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1079 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1836 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3500 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_3539 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_2587 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1014 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1075 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0211 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0291 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_2388 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3170 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_2586 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1001 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3501 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3541 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_4062 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1015 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1076 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0210 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0266 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0292 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_2387 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3169 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_4066 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1002 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1835 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3502 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3537 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_2585 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3898 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_4067 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3752 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3775 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3503 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3542 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2283 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0545 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0321 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2479 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3284 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3326 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3025 cyclic nucleotide-binding domain (cNMP-BD) protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_2394 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3511 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3543 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_2666 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D Rfer_2064 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D Rfer_0985 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rfer_0934 Twin-arginine translocation pathway signal K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rfer_0933 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rfer_0984 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rfer_0932 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rfer_0983 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rfer_0982 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rfer_0931 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rfer_0930 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rfer_0981 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rfer_4242 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rfer_3598 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Rfer_1492 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Rfer_4223 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Rfer_3867 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Rfer_2911 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rfer_1672 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rfer_1312 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Rfer_3342 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rfer_3735 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
D Rfer_3736 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:rfr02030]
D Rfer_0898 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3137 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3610 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3449 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3937 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0925 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3609 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2354 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_1480 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2225 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2507 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0120 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Rfer_0438 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Rfer_3131 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Rfer_1949 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein
D Rfer_0901 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0567 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0991 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0903 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0568 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_1476 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0924 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0899 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_0566 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_3704 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_1888 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Rfer_3705 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D Rfer_0571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_0906 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_2357 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_3013 MCP methyltransferase, CheR-type K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_0364 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Rfer_0905 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Rfer_0570 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Rfer_0569 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Rfer_0904 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Rfer_0551 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Rfer_0557 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Rfer_0558 Flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D Rfer_3702 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Rfer_3703 OmpA/MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:rfr02040]
D Rfer_0549 flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE
D Rfer_0550 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Rfer_0551 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Rfer_0552 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D Rfer_0553 ATPase FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Rfer_0554 Flagellar export FliJ K02413 fliJ; flagellar protein FliJ
D Rfer_0555 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Rfer_0556 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Rfer_0557 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Rfer_0558 Flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D Rfer_0559 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Rfer_0560 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Rfer_0561 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Rfer_0562 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Rfer_3707 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Rfer_3706 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB
D Rfer_3713 Flageller protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Rfer_3714 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Rfer_3715 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Rfer_3716 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Rfer_3717 protein of unknown function DUF1078-like K02390 flgE; flagellar hook protein FlgE
D Rfer_3718 Flagellar basal-body rod FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Rfer_3719 Flagellar basal-body rod FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Rfer_3720 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Rfer_3721 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Rfer_3722 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase K02395 flgJ; peptidoglycan hydrolase FlgJ
D Rfer_3723 Flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D Rfer_3724 flagellin-like K02397 flgL; flagellar hook-associated protein 3 FlgL
D Rfer_0630 flagellin-like K02406 fliC; flagellin
D Rfer_0631 flagellin-like K02406 fliC; flagellin
D Rfer_0632 flagellar hook-associated 2-like K02407 fliD; flagellar hook-associated protein 2
D Rfer_0633 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Rfer_0634 flagellar protein FliT K02423 fliT; flagellar protein FliT
D Rfer_3702 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Rfer_3703 OmpA/MotB K02557 motB; chemotaxis protein MotB
D Rfer_3712 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Rfer_1558 sigma 70 (RpoD) K03086 rpoD; RNA polymerase primary sigma factor
D Rfer_3070 sigma 28 K03086 rpoD; RNA polymerase primary sigma factor
D Rfer_3700 flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D Rfer_3701 flagellar regulon master regulator subunit FlhC K02402 flhC; flagellar transcriptional activator FlhC
D Rfer_0778 sigma-54 (RpoN) K03092 rpoN; RNA polymerase sigma-54 factor
D Rfer_3710 sigma 28 (Flagella/Sporulation) K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D Rfer_2650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:rfr04980]
D Rfer_1478 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D Rfer_2804 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-]
D Rfer_2805 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D Rfer_0460 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D Rfer_0466 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rfr01501]
D Rfer_0516 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Rfer_1754 Beta-N-acetylhexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D Rfer_2066 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D Rfer_2065 Hydrophobe/amphiphile efflux-1 HAE1 K18138 acrB; multidrug efflux pump
D Rfer_2064 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D Rfer_2604 Type I secretion outer membrane protein, TolC K12340 tolC; outer membrane protein
D Rfer_2918 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_0917 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_4058 glycosyl transferase, family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_3920 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Rfer_3431 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rfr01502]
D Rfer_3423 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rfer_0488 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rfer_3429 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D Rfer_3428 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rfer_3425 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rfr01503]
D Rfer_3684 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Rfer_3685 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Rfer_3303 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Rfer_3822 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_1739 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_0775 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Rfer_1346 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rfer_2066 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D Rfer_2065 Hydrophobe/amphiphile efflux-1 HAE1 K18138 acrB; multidrug efflux pump
D Rfer_2604 Type I secretion outer membrane protein, TolC K12340 tolC; outer membrane protein
D Rfer_2000 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rfr01000]
C 01001 Protein kinases [BR:rfr01001]
D Rfer_4056 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Rfer_3942 serine/threonine protein kinase with Chase2 sensor K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Rfer_2728 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D Rfer_1278 phage integrase K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D Rfer_0660 Protein-tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Rfer_0577 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Rfer_3684 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Rfer_2733 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Rfer_0509 periplasmic sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D Rfer_0423 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D Rfer_0504 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Rfer_2541 periplasmic sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Rfer_3121 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3951 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3522 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3821 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rfer_1870 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Rfer_1711 histidine kinase internal protein K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D Rfer_2453 histidine kinase internal protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Rfer_2981 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Rfer_3588 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Rfer_3096 periplasmic sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Rfer_3344 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rfer_2788 periplasmic sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rfer_3454 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D Rfer_4122 PAS/PAC sensor signal transduction histidine kinase K19661 hupT; two-component system, NtrC family, sensor histidine kinase HupT/HoxJ [EC:2.7.13.3]
D Rfer_2742 periplasmic sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_0246 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_1978 PAS/PAC sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_3574 periplasmic sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_0901 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0567 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_1375 CheA signal transduction histidine kinases K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rfer_1485 multi-sensor signal transduction histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rfer_0922 multi-sensor signal transduction histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rfer_3083 periplasmic sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Rfer_1136 periplasmic sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Rfer_1768 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D Rfer_2263 periplasmic sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rfr01009]
D Rfer_0652 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rfer_3551 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Rfer_1628 protein serine/threonine phosphatases K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Rfer_3941 protein serine/threonine phosphatases K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Rfer_2317 protein serine/threonine phosphatases K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D Rfer_1329 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:rfr01002]
D Rfer_1431 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36]
D Rfer_2904 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rfer_0790 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D Rfer_4092 HybD peptidase. Aspartic peptidase. MEROPS family A31 K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D Rfer_1229 peptidase C14, caspase catalytic subunit p20 K22684 MCA1; metacaspase-1 [EC:3.4.22.-]
D Rfer_0871 pyroglutamyl-peptidase I. Cysteine peptidase. MEROPS family C15 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D Rfer_2287 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D Rfer_0349 peptidase C26 K07010 K07010; putative glutamine amidotransferase
D Rfer_2683 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D Rfer_2933 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D Rfer_1074 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D Rfer_0683 asparagine synthase (glutamine-hydrolysing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_3652 Asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_0669 Asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_0671 Asparagine synthase, glutamine-hydrolyzing K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D Rfer_2768 Peptidase C56, PfpI K05520 yhbO; deglycase [EC:3.5.1.124]
D Rfer_1347 ErfK/YbiS/YcfS/YnhG K19234 ynhG; L,D-transpeptidase YnhG
D Rfer_2703 alanyl aminopeptidase. Metallo peptidase. MEROPS family M01 K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D Rfer_2208 oligopeptidase A. Metallo peptidase. MEROPS family M03A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D Rfer_1048 peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D Rfer_1671 peptidase M16-like K07263 pqqL; zinc protease [EC:3.4.24.-]
D Rfer_1670 peptidase M16-like K07263 pqqL; zinc protease [EC:3.4.24.-]
D Rfer_2116 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D Rfer_2044 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rfer_0166 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D Rfer_0852 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Rfer_2421 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D Rfer_0086 aminopeptidase P. Metallo peptidase. MEROPS family M24B K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D Rfer_3175 Thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D Rfer_2418 FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rfer_2011 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rfer_0117 AAA ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rfer_1411 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D Rfer_3463 HtpX peptidase. Metallo peptidase. MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D Rfer_4041 peptidase M48, Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D Rfer_1995 RseP peptidase. Metallo peptidase. MEROPS family M50B K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D Rfer_3107 D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55 K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D Rfer_3456 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase
D Rfer_3106 aminopeptidase DmpA. Serine peptidase. MEROPS family S58 K01266 dmpA; D-aminopeptidase [EC:3.4.11.19]
D Rfer_3822 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_1739 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_2959 peptidase S1 and S6, chymotrypsin/Hap K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D Rfer_0920 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rfer_3801 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rfer_2346 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Rfer_1156 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Rfer_0191 D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS family S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Rfer_1554 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D Rfer_1556 Lon-A peptidase. Serine peptidase. MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Rfer_3006 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D Rfer_2994 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Rfer_4342 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D Rfer_1741 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D Rfer_0089 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D Rfer_3189 alpha/beta hydrolase K22369 EPHX4; epoxide hydrolase 4 [EC:3.3.-.-]
D Rfer_1308 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D Rfer_1547 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D Rfer_1724 peptidase S49 K04773 sppA; protease IV [EC:3.4.21.-]
D Rfer_2285 peptidase U61, LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Rfer_3436 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D Rfer_3101 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Rfer_3409 peptidase T2, asparaginase 2 K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D Rfer_3386 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D Rfer_1385 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D Rfer_2414 peptidase U32 K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D Rfer_0135 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D Rfer_0136 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D Rfer_2887 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 K03592 pmbA; PmbA protein
D Rfer_3369 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 K03568 tldD; TldD protein
D Rfer_2299 HflC protein K04087 hflC; modulator of FtsH protease HflC
D Rfer_2300 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rfr01003]
D Rfer_0512 Glycogen/starch synthases, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D Rfer_3419 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rfer_2918 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_0917 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_4058 glycosyl transferase, family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_0672 glycosyl transferase, group 1 K21001 pslH; polysaccharide biosynthesis protein PslH
D Rfer_2784 glycosyl transferase, family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D Rfer_2163 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rfr01005]
D Rfer_2000 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D Rfer_2001 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D Rfer_3414 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D Rfer_1998 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D Rfer_1344 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D Rfer_3155 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D Rfer_3881 putative acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rfer_3188 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D Rfer_2997 Three-deoxy-D-manno-octulosonic-acid transferase-like K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D Rfer_2649 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D Rfer_3157 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Rfer_1242 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D Rfer_4236 Phosphatase kdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D Rfer_4237 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D Rfer_1562 D-alpha,beta-D-heptose 7-phosphate 1-kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D Rfer_4052 RfaE bifunctional protein, domain II K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D Rfer_2998 Lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D Rfer_0508 Lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D Rfer_3874 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rfer_1245 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D Rfer_3694 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D Rfer_1561 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D Rfer_0771 glycosyl transferase, family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D Rfer_1263 sugar transferase K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rfr01011]
D Rfer_2944 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D Rfer_2691 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D Rfer_3424 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D Rfer_3427 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D Rfer_3430 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D Rfer_3423 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D Rfer_0488 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D Rfer_2597 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D Rfer_2285 peptidase U61, LD-carboxypeptidase A K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D Rfer_3428 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D Rfer_3425 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D Rfer_1829 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rfer_1745 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D Rfer_2123 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Rfer_2918 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_0917 Penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_4058 glycosyl transferase, family 51 K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D Rfer_3920 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D Rfer_3431 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rfer_0920 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rfer_3801 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D Rfer_0191 D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS family S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D Rfer_2346 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Rfer_1156 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D Rfer_3419 Monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D Rfer_1347 ErfK/YbiS/YcfS/YnhG K19234 ynhG; L,D-transpeptidase YnhG
D Rfer_1088 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D Rfer_0365 MltA K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D Rfer_2545 Lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Rfer_0327 Lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Rfer_0850 Lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D Rfer_1461 Lytic transglycosylase, catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D Rfer_2254 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D Rfer_3303 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Rfer_3346 negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:rfr01004]
D Rfer_1849 (Acyl-carrier protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rfer_1731 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D Rfer_1730 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rfer_3974 conserved hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D Rfer_3984 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rfer_3977 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D Rfer_1734 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_3139 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_3999 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_4001 beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D Rfer_1638 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3586 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_1732 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3994 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_3195 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_4047 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D Rfer_1999 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rfer_4002 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D Rfer_2127 Enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D Rfer_2424 lipolytic enzyme, G-D-S-L K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D Rfer_0997 Palmitoyl-CoA hydrolase K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D Rfer_3494 thioesterase superfamily K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D Rfer_3182 fatty acid desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D Rfer_2698 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2581 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_0388 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D Rfer_2322 Propionate--CoA ligase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D Rfer_3963 acetoacetyl-CoA synthase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16]
D Rfer_3898 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_4067 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3752 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3775 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3503 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3542 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2283 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0545 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0321 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2479 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3284 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3833 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D Rfer_1729 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D Rfer_2695 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D Rfer_3693 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D Rfer_2021 lyso-ornithine lipid acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:rfr01008]
D Rfer_3108 Aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:rfr01006]
D Rfer_2876 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D Rfer_1267 Farnesyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D Rfer_2675 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D Rfer_1549 farnesyl-diphosphate farnesyltransferase K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D Rfer_1535 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Rfer_3680 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D Rfer_1689 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:rfr01007]
D Rfer_2681 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rfer_1823 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rfer_1905 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Rfer_0728 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rfer_3240 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Rfer_1349 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rfer_0773 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rfer_3275 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rfer_1432 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rfer_2376 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rfer_0758 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rfer_1784 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rfer_1297 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rfer_2306 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rfer_3696 Glycine--tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Rfer_3695 Glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Rfer_3243 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rfer_1274 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Rfer_1336 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Rfer_0590 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rfer_1340 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rfer_1341 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rfer_0881 aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D Rfer_1911 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D Rfer_2174 aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D Rfer_2111 aminotransferase K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D Rfer_2047 succinyldiaminopimelate aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D Rfer_2615 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_1408 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_2947 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D Rfer_0373 aminotransferase K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D Rfer_2121 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D Rfer_0592 4-aminobutyrate aminotransferase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D Rfer_0351 aminotransferase K12256 spuC; putrescine---pyruvate transaminase [EC:2.6.1.113]
D Rfer_1369 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D Rfer_1037 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_1546 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D Rfer_0506 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D Rfer_3314 Anthranilate synthase component I and chorismate binding protein K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D Rfer_1570 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rfr00194]
D Rfer_1389 ferredoxin K02639 petF; ferredoxin
D Rfer_1162 H+-transporting two-sector ATPase, delta/epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rfer_0105 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D Rfer_1161 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rfer_0106 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D Rfer_1169 H+-transporting two-sector ATPase, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rfer_0107 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D Rfer_1168 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rfer_0108 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D Rfer_0109 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rfer_0110 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D Rfer_1166 H+-transporting two-sector ATPase, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rfer_0111 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D Rfer_1165 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rfer_0112 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rfer_1163 F0F1-ATPase subunit, putative K02116 atpI; ATP synthase protein I
D Rfer_0113 putative ATP synthase protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rfr03000]
D Rfer_3077 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Rfer_0584 transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D Rfer_0297 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Rfer_3000 DNA-3-methyladenine glycosylase II / Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rfer_0119 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Rfer_4071 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Rfer_0879 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Rfer_1086 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Rfer_3458 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D Rfer_3681 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Rfer_2058 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rfer_0399 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rfer_2112 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D Rfer_0441 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D Rfer_0846 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D Rfer_0341 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Rfer_0987 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Rfer_0844 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Rfer_3465 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D Rfer_0374 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D Rfer_1394 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D Rfer_3677 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D Rfer_3738 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D Rfer_1112 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Rfer_0957 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D Rfer_0146 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D Rfer_4157 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D Rfer_1802 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Rfer_0202 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Rfer_3584 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Rfer_0447 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Rfer_1641 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Rfer_0348 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Rfer_2067 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D Rfer_3521 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D Rfer_2599 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D Rfer_0303 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Rfer_0016 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Rfer_1766 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Rfer_3508 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D Rfer_2022 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rfer_1081 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rfer_3648 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rfer_2164 transcriptional regulator, MarR family K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D Rfer_0279 transcriptional regulator, MarR family K22489 hosA; MarR family transcriptional regulator, temperature-dependent positive regulator of motility
D Rfer_0573 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Rfer_1620 transcriptional regulator, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D Rfer_0023 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Rfer_0753 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Rfer_2054 putative ferric uptake regulator, FUR family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Rfer_3326 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3025 cyclic nucleotide-binding domain (cNMP-BD) protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_2394 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3511 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_3543 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Rfer_1703 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Rfer_1937 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Rfer_0022 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Rfer_1540 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Rfer_0060 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Rfer_3168 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
D Rfer_2176 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Rfer_3459 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D Rfer_1883 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D Rfer_1866 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D Rfer_3667 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Rfer_0219 transcriptional regulator, XRE family with shikimate kinase activity K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator
D Rfer_1124 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D Rfer_3953 Biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Rfer_1581 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Rfer_2864 sigma54 specific transcriptional regulator with GAF sensor, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Rfer_2856 putative GAF sensor protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Rfer_2857 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D Rfer_2811 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Rfer_3198 FMN-binding K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D Rfer_3757 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Rfer_2398 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Rfer_0053 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_4284 parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_4412 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_1650 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Rfer_0524 conserved hypothetical protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D Rfer_1379 phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Rfer_1361 putative transcriptional regulator K07733 alpA; prophage regulatory protein
D Rfer_2832 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Rfer_3387 negative transcriptional regulator K07734 paiB; transcriptional regulator
D Rfer_1377 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Rfer_3438 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Rfer_0615 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Rfer_2659 Protein of unknown function DUF193 K07738 nrdR; transcriptional repressor NrdR
D Rfer_3434 protein of unknown function UPF0040 K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rfr03021]
D Rfer_4217 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rfer_3592 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rfer_3591 DNA-directed RNA polymerase, subunit beta-prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rfer_3148 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Rfer_1558 sigma 70 (RpoD) K03086 rpoD; RNA polymerase primary sigma factor
D Rfer_3070 sigma 28 K03086 rpoD; RNA polymerase primary sigma factor
D Rfer_2779 sigma-70 region 2 K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D Rfer_1603 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_1736 sigma-24 (FecI-like) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_2548 sigma-24 (FecI-like) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_4136 sigma-24 (FecI-like) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_3321 sigma-24 (FecI-like) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_3639 sigma-24 (FecI-like) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_3144 sigma-24 (FecI-like) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_4146 sigma-24 (FecI-like) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D Rfer_1692 sigma 32 (RpoH) K03089 rpoH; RNA polymerase sigma-32 factor
D Rfer_0778 sigma-54 (RpoN) K03092 rpoN; RNA polymerase sigma-54 factor
D Rfer_3710 sigma 28 (Flagella/Sporulation) K02405 fliA; RNA polymerase sigma factor FliA
D Rfer_2133 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Rfer_2670 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Rfer_3597 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Rfer_2967 glutathione S-transferase-like K03599 sspA; stringent starvation protein A
D Rfer_2968 Stringent starvation protein B K03600 sspB; stringent starvation protein B
D Rfer_1737 anti sigma-E protein, RseA, Burkholderiaceae specific K03597 rseA; sigma-E factor negative regulatory protein RseA
D Rfer_1738 putative sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D Rfer_3438 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Rfer_0615 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Rfer_2007 GreA/GreB family elongation factor K03624 greA; transcription elongation factor GreA
D Rfer_3150 GreA/GreB family elongation factor K04760 greB; transcription elongation factor GreB
D Rfer_2899 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rfr03019]
D Rfer_1720 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D Rfer_2082 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Rfer_1743 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Rfer_1976 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Rfer_0094 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D Rfer_1412 Exonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Rfer_2169 DEAD/DEAH box helicase-like K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rfer_3028 DEAD/DEAH box helicase-like K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rfer_3579 DEAD/DEAH box helicase-like K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D Rfer_0407 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rfer_0459 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rfer_2650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rfer_1489 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D Rfer_2899 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D Rfer_0832 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D Rfer_1969 Chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rfer_1131 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_3009 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_2302 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Rfer_2017 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D Rfer_2509 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D Rfer_1273 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D Rfer_1955 Protein of unknown function 1935 K02553 rraA; regulator of ribonuclease activity A
D Rfer_1653 Uncharacterised P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ
D Rfer_2106 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:rfr03011]
D Rfer_1566 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D Rfer_1989 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D Rfer_3789 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D Rfer_4218 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D Rfer_4226 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D Rfer_2193 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D Rfer_3799 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D Rfer_4229 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D Rfer_0722 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D Rfer_3796 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D Rfer_4219 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D Rfer_3800 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D Rfer_4220 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D Rfer_4230 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D Rfer_1488 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D Rfer_1402 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D Rfer_3786 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D Rfer_2195 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D Rfer_3791 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D Rfer_2122 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D Rfer_2885 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D Rfer_3595 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D Rfer_3792 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D Rfer_3795 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D Rfer_3794 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D Rfer_4231 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D Rfer_4228 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D Rfer_2196 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D Rfer_3594 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D Rfer_3596 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D Rfer_3593 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D Rfer_0721 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D Rfer_4233 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D Rfer_4224 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D Rfer_3788 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D Rfer_4216 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D Rfer_4227 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D Rfer_1405 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D Rfer_1339 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D Rfer_1268 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D Rfer_3790 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D Rfer_3793 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D Rfer_4232 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D Rfer_1269 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D Rfer_3180 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D Rfer_3787 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D Rfer_4225 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D Rfer_2900 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D Rfer_1728 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D Rfer_3181 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D Rfer_4245 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D Rfer_1338 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D Rfer_4221 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D Rfer_1661 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D Rfer_R0049 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rfer_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rfer_R0053 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rfer_R0058 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rfer_R0050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rfer_R0055 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rfr03009]
D Rfer_1743 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Rfer_4056 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D Rfer_1412 Exonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Rfer_1744 GTP-binding protein Era K03595 era; GTPase
D Rfer_1270 Small GTP-binding protein domain K03979 obgE; GTPase [EC:3.6.5.-]
D Rfer_3438 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Rfer_0615 transcriptional regulators, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Rfer_2133 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D Rfer_2670 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D Rfer_3597 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D Rfer_2976 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D Rfer_0096 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D Rfer_3183 Fmu (Sun) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Rfer_3590 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D Rfer_1668 conserved hypothetical protein 95 K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D Rfer_0207 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D Rfer_0050 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Rfer_3433 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D Rfer_1725 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Rfer_3872 Protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D Rfer_0653 ribosomal RNA methyltransferase RrmJ/FtsJ K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D Rfer_2232 RNA methyltransferase TrmH, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D Rfer_2010 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D Rfer_2080 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D Rfer_3440 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D Rfer_0720 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D Rfer_0779 putative RNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D Rfer_2310 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D Rfer_2778 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D Rfer_2765 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rfer_1895 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rfer_2312 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D Rfer_1721 Pseudouridine synthase, RluD K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D Rfer_2314 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D Rfer_3544 RNA-binding S4 K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D Rfer_3457 RNA-binding S4 K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D Rfer_0188 SSU ribosomal protein S18P alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D Rfer_1403 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D Rfer_1975 conserved hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D Rfer_2565 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D Rfer_3351 LSU ribosomal protein L11P methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D Rfer_2043 modification methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D Rfer_2644 Cupin 4 K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D Rfer_1720 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D Rfer_2082 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D Rfer_1378 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D Rfer_3577 DEAD/DEAH box helicase-like K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D Rfer_1409 GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D Rfer_2303 Small GTP-binding protein domain K03977 engA; GTPase
D Rfer_1388 GTP-binding K14540 rbgA; ribosome biogenesis GTPase A
D Rfer_2301 Small GTP-binding protein domain K03665 hflX; GTPase
D Rfer_0195 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Rfer_3149 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D Rfer_2135 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D Rfer_2132 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D Rfer_2079 Iojap-related protein K09710 ybeB; ribosome-associated protein
D Rfer_0737 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D Rfer_2009 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
D Rfer_2888 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein
D Rfer_0750 SSU ribosomal protein S30P / sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D Rfer_1578 conserved hypothetical protein K06942 ychF; ribosome-binding ATPase
D Rfer_1727 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:rfr03016]
D Rfer_1232 conserved hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D Rfer_0094 guanine-specific ribonuclease N1 and T1 K01167 rnaSA; ribonuclease T1 [EC:4.6.1.24]
D Rfer_1090 metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D Rfer_3852 protein of unknown function UPF0027 K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D Rfer_3853 protein of unknown function DUF101 K24956 ZBTB8OS; protein archease
D Rfer_2681 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rfer_1274 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D Rfer_1432 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D Rfer_0758 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rfer_3275 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D Rfer_1823 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D Rfer_0773 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rfer_1784 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D Rfer_1297 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rfer_0590 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D Rfer_1336 threonyl-tRNA synthetase / Ser-tRNA(Thr) hydrolase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D Rfer_3243 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D Rfer_1349 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D Rfer_2376 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D Rfer_2306 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D Rfer_1340 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D Rfer_1341 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D Rfer_0728 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rfer_3240 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D Rfer_0730 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D Rfer_2955 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Rfer_1896 conserved hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D Rfer_1790 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D Rfer_2136 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D Rfer_2177 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rfer_0195 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D Rfer_1535 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D Rfer_4241 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D Rfer_0049 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Rfer_1613 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Rfer_2844 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D Rfer_4244 hypothetical protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D Rfer_R0043 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D Rfer_1629 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D Rfer_3411 ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D Rfer_1422 Exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D Rfer_2222 conserved hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Rfer_2842 2',5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D Rfer_2171 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA
D Rfer_3696 Glycine--tRNA ligase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D Rfer_3695 Glycine--tRNA ligase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D Rfer_1905 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D Rfer_2286 CMP/dCMP deaminase, zinc-binding K01563 dhaA; haloalkane dehalogenase [EC:3.8.1.5]
D Rfer_1943 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D Rfer_1580 Dihydrouridine synthase TIM-barrel protein nifR3 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D Rfer_3024 dihydrouridine synthase, DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D Rfer_3365 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D Rfer_2891 RNA methyltransferase TrmH, group 1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D Rfer_1404 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D Rfer_1677 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D Rfer_2003 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D Rfer_2765 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rfer_1895 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D Rfer_3756 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D Rfer_0815 PP-loop K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D Rfer_2377 SirA-like K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D Rfer_2179 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D Rfer_1859 HesB/YadR/YfhF K13628 iscA; iron-sulfur cluster assembly protein
D Rfer_2253 glycine cleavage T protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ
D Rfer_2101 FAD dependent oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D Rfer_0628 S-adenosylmethionine K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D Rfer_0736 ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D Rfer_2613 6-pyruvoyl tetrahydropterin synthase and hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D Rfer_2614 Organic radical activating enzymes-like K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D Rfer_2370 GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D Rfer_0276 conserved hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Rfer_3301 4Fe-4S cluster binding K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D Rfer_2423 Rhodanese-like K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D Rfer_0626 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D Rfer_1352 tRNA(Ile)-lysidine synthetase-like K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D Rfer_0189 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D Rfer_2068 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D Rfer_3302 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D Rfer_2095 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D Rfer_1976 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D Rfer_1489 3' exoribonuclease K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rfr03012]
D Rfer_1757 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1
D Rfer_2134 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Rfer_1337 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Rfer_2041 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D Rfer_1990 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Rfer_3599 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Rfer_3797 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Rfer_1382 Small GTP-binding protein domain K02355 fusA; elongation factor G
D Rfer_3798 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Rfer_1280 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1
D Rfer_1992 ribosome recycling factor K02838 frr; ribosome recycling factor
D Rfer_1279 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D Rfer_1662 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D Rfer_4222 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1
D Rfer_2242 translation elongation factor P (EF-P) K02356 efp; elongation factor P
D Rfer_0645 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3
D Rfer_1386 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:rfr03110]
D Rfer_2759 ATPase AAA-2 K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D Rfer_1919 ATPase AAA-2 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D Rfer_1555 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D Rfer_3435 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D Rfer_3551 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Rfer_0832 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D Rfer_1969 Chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rfer_2181 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D Rfer_1948 molecular chaperone, Hsp70 class K04046 yegD; hypothetical chaperone protein
D Rfer_1131 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_3009 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_0830 heat shock protein DnaJ-like K03686 dnaJ; molecular chaperone DnaJ
D Rfer_1968 Chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Rfer_0490 heat shock protein DnaJ-like K05516 cbpA; curved DNA-binding protein
D Rfer_2180 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D Rfer_2652 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D Rfer_1970 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Rfer_0833 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Rfer_1537 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein
D Rfer_3005 conserved hypothetical protein K13993 HSP20; HSP20 family protein
D Rfer_2640 RNA-binding S4 K04762 hslR; ribosome-associated heat shock protein Hsp15
D Rfer_1132 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Rfer_3822 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_1739 Peptidase S1C, Do K04771 degP; serine protease Do [EC:3.4.21.107]
D Rfer_2418 FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rfer_2011 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rfer_0117 AAA ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D Rfer_1165 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rfer_0112 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D Rfer_1312 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Rfer_0011 conserved hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D Rfer_0618 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A
D Rfer_0617 protein of unknown function DUF461 K09796 pccA; periplasmic copper chaperone A
D Rfer_4095 hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D Rfer_4096 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D Rfer_1346 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rfer_1345 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D Rfer_2249 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D Rfer_1971 peptidylprolyl isomerase, FKBP-type K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D Rfer_3249 peptidylprolyl isomerase, FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D Rfer_1277 putative fkbp-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Rfer_2645 fkbp-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D Rfer_2399 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Rfer_2796 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Rfer_4396 hypothetical protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D Rfer_0097 PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D Rfer_0943 putative thioredoxin K03671 TXN; thioredoxin
D Rfer_2898 thioredoxin K03671 TXN; thioredoxin
D Rfer_1193 putative thioredoxin K03671 TXN; thioredoxin
D Rfer_1123 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D Rfer_0198 thioredoxin K05838 ybbN; putative thioredoxin
D Rfer_1311 Glutaredoxin, GrxC K03676 grxC; glutaredoxin 3
D Rfer_1276 Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
D Rfer_0010 glutaredoxin K07390 grxD; monothiol glutaredoxin
D Rfer_0775 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D Rfer_2104 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D Rfer_1575 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Rfer_0039 periplasmic protein thiol K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D Rfer_3811 hypothetical protein K03805 dsbG; thiol:disulfide interchange protein DsbG
C 04131 Membrane trafficking [BR:rfr04131]
D Rfer_2311 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D Rfer_0520 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Rfer_3664 arsenite-activated ATPase (arsA) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Rfer_4111 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rfer_1309 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D Rfer_0205 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rfer_3551 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:rfr04121]
C 03051 Proteasome [BR:rfr03051]
D Rfer_3551 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rfr03032]
D Rfer_1464 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D Rfer_3077 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Rfer_2248 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta
D Rfer_1342 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Rfer_1565 histone-like DNA-binding protein K05788 ihfB; integration host factor subunit beta
D Rfer_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Rfer_2580 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D Rfer_2203 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D Rfer_3772 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Rfer_4275 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Rfer_2040 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rfer_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_4311 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_2117 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rfer_0760 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rfer_2256 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rfer_2183 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2572 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_3777 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_1457 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rfer_2002 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D Rfer_1325 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rfer_2201 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rfer_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Rfer_2511 Chromosomal replication initiator, DnaA K10763 hda; DnaA-homolog protein
D Rfer_1571 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rfer_0003 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rfer_2641 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Rfer_2642 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Rfer_3955 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rfr03036]
D Rfer_3077 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Rfer_3568 Methyltransferase type 12 K20798 HENMT1; small RNA 2'-O-methyltransferase [EC:2.1.1.386]
D Rfer_1743 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D Rfer_3525 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D Rfer_2248 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta
D Rfer_1342 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Rfer_1565 histone-like DNA-binding protein K05788 ihfB; integration host factor subunit beta
D Rfer_0490 heat shock protein DnaJ-like K05516 cbpA; curved DNA-binding protein
D Rfer_0491 hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM
D Rfer_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D Rfer_1581 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Rfer_2302 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D Rfer_2058 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rfer_0399 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Rfer_2022 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rfer_1081 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rfer_3648 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Rfer_2199 Chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D Rfer_3030 condensin subunit ScpA K05896 scpA; segregation and condensation protein A
D Rfer_2313 condensin subunit ScpB K06024 scpB; segregation and condensation protein B
D Rfer_3421 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Rfer_2651 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D Rfer_3431 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D Rfer_3178 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D Rfer_3432 Cell division protein, FtsL -like K03586 ftsL; cell division protein FtsL
D Rfer_3422 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D Rfer_3426 cell cycle protein K03588 ftsW; cell division protein FtsW
D Rfer_3420 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Rfer_3052 Twin-arginine translocation pathway signal K03531 ftsZ; cell division protein FtsZ
D Rfer_2627 cell division protein ZapA K09888 zapA; cell division protein ZapA
D Rfer_2626 hypothetical protein K09892 zapB; cell division protein ZapB
D Rfer_2906 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD
D Rfer_2318 AFG1-like ATPase K06916 zapE; cell division protein ZapE
D Rfer_3303 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D Rfer_2066 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D Rfer_0036 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Rfer_0035 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Rfer_0034 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Rfer_3521 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D Rfer_3923 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Rfer_3922 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D Rfer_3921 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D Rfer_3371 Rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D Rfer_0051 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Rfer_0468 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Rfer_1675 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Rfer_4285 ATPases involved in chromosome partitioning-like K03496 parA; chromosome partitioning protein
D Rfer_1355 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Rfer_0053 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_4284 parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_4412 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_2641 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Rfer_2642 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Rfer_0049 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D Rfer_0050 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D Rfer_3442 phage integrase K03733 xerC; integrase/recombinase XerC
D Rfer_4328 phage integrase K03733 xerC; integrase/recombinase XerC
D Rfer_2654 tyrosine recombinase XerD subunit K04763 xerD; integrase/recombinase XerD
D Rfer_1196 phage integrase K04763 xerD; integrase/recombinase XerD
D Rfer_3272 putative iron sulfur binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Rfer_4037 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D Rfer_3190 GTP-binding protein, HSR1-related K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rfr03400]
D Rfer_3001 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Rfer_1704 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D Rfer_1376 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D Rfer_3600 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D Rfer_1654 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D Rfer_2607 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D Rfer_2908 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D Rfer_2646 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D Rfer_4016 DNA-N1-methyladenine dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D Rfer_0187 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D Rfer_1350 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rfer_3000 DNA-3-methyladenine glycosylase II / Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D Rfer_1656 Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D Rfer_3929 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rfer_2983 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D Rfer_3234 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D Rfer_2201 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Rfer_1325 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D Rfer_3814 UvrA family protein K03701 uvrA; excinuclease ABC subunit A
D Rfer_3774 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D Rfer_2175 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D Rfer_2244 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D Rfer_3035 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D Rfer_3592 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D Rfer_3591 DNA-directed RNA polymerase, subunit beta-prime K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D Rfer_4217 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D Rfer_3148 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Rfer_1331 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D Rfer_1832 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Rfer_3308 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D Rfer_2072 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D Rfer_3152 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D Rfer_2877 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D Rfer_2040 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D Rfer_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_4311 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D Rfer_2117 DNA polymerase III chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D Rfer_0760 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D Rfer_2256 DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D Rfer_2183 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_2572 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_3777 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D Rfer_1457 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D Rfer_3772 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Rfer_4275 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Rfer_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Rfer_3075 T/G mismatch-specific endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D Rfer_3948 recA protein K03553 recA; recombination protein RecA
D Rfer_0739 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D Rfer_0820 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D Rfer_3417 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D Rfer_0822 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D Rfer_2194 putative primosomal replication protein K02686 priB; primosomal replication protein N
D Rfer_0500 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Rfer_4298 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D Rfer_3688 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D Rfer_1751 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D Rfer_1459 recombination protein RecR K06187 recR; recombination protein RecR
D Rfer_1652 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D Rfer_0012 putative exonuclease, RdgC K03554 rdgC; recombination associated protein RdgC
D Rfer_2896 UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D Rfer_2897 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Rfer_3907 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Rfer_4348 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Rfer_2074 protein of unknown function DUF853, NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D Rfer_4361 ATP dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D Rfer_1571 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D Rfer_0003 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D Rfer_2248 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta
D Rfer_3446 beta-lactamase-like K07455 recT; recombination protein RecT
D Rfer_1581 helix-turn-helix, Fis-type K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D Rfer_1342 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D Rfer_1565 histone-like DNA-binding protein K05788 ihfB; integration host factor subunit beta
D Rfer_0407 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rfer_0459 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D Rfer_3525 histone-like nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D Rfer_2353 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D Rfer_4341 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V
D Rfer_4342 putative prophage repressor K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D Rfer_2994 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D Rfer_1225 conserved hypothetical protein K14160 imuA; protein ImuA
D Rfer_1226 conserved hypothetical protein K14161 imuB; protein ImuB
D Rfer_1227 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D Rfer_3905 prophage antirepressor K14623 dinD; DNA-damage-inducible protein D
D Rfer_3947 regulatory protein RecX K03565 recX; regulatory protein
D Rfer_0829 PHP-like K02347 polX; DNA polymerase (family X)
D Rfer_2033 Helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Rfer_2316 Helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D Rfer_2197 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3011 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3347 Ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D Rfer_3348 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rfr03029]
D Rfer_2965 cytochrome b/b6-like K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D Rfer_2134 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D Rfer_1337 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D Rfer_1990 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D Rfer_3599 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Rfer_3797 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Rfer_1382 Small GTP-binding protein domain K02355 fusA; elongation factor G
D Rfer_3798 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D Rfer_1744 GTP-binding protein Era K03595 era; GTPase
D Rfer_0728 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D Rfer_0758 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D Rfer_1297 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D Rfer_0773 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D Rfer_1988 Amidase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rfer_0989 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rfer_3925 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D Rfer_3926 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D Rfer_3924 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D Rfer_4319 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D Rfer_1212 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D Rfer_3772 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D Rfer_4275 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein
D Rfer_1996 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D Rfer_0832 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D Rfer_1969 Chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rfer_1970 GrpE protein K03687 GRPE; molecular chaperone GrpE
D Rfer_1131 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_3009 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_1132 chaperonin Cpn10 K04078 groES; chaperonin GroES
D Rfer_0830 heat shock protein DnaJ-like K03686 dnaJ; molecular chaperone DnaJ
D Rfer_1968 Chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D Rfer_2177 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rfer_2180 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D Rfer_1276 Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
D Rfer_0010 glutaredoxin K07390 grxD; monothiol glutaredoxin
D Rfer_1865 nitrogen-fixing NifU-like K22074 NFU1; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
D Rfer_1050 conserved hypothetical protein K18159 NDUFAF1; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
D Rfer_3272 putative iron sulfur binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D Rfer_3229 FAD dependent oxidoreductase K18166 FOXRED1; FAD-dependent oxidoreductase domain-containing protein 1
D Rfer_1689 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D Rfer_1682 cytochrome c oxidase assembly protein CtaG/Cox11 K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D Rfer_1688 cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D Rfer_4242 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rfer_1686 putative membrane protein K14998 SURF1; surfeit locus 1 family protein
D Rfer_1690 electron transport protein SCO1/SenC K07152 SCO1; protein SCO1
D Rfer_4124 uncharacterized protein SCO1/SenC/PrrC,involved in biogenesis of respiratory and photosynthetic systems K07152 SCO1; protein SCO1
D Rfer_3551 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rfr02000]
D Rfer_2090 Lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D Rfer_2722 ABC transporter related K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rfer_3493 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D Rfer_1512 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Rfer_1316 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D Rfer_3770 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Rfer_0735 ABC transporter-like K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D Rfer_3826 ABC transporter related K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D Rfer_0642 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein
D Rfer_1762 Thiosulphate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D Rfer_1781 Thiosulphate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D Rfer_1761 Sulfate ABC transporter, permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D Rfer_1760 Sulfate ABC transporter, permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D Rfer_1759 Sulphate transport system permease protein 1 K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D Rfer_0340 putative ABC transporter, periplasmic molybdate binding protein K02020 modA; molybdate transport system substrate-binding protein
D Rfer_2858 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D Rfer_2859 Molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D Rfer_2860 Molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D Rfer_2867 putative exported protein K05772 tupA; tungstate transport system substrate-binding protein
D Rfer_2869 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein
D Rfer_2868 ABC transporter related K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D Rfer_3742 Twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rfer_2554 twin-arginine translocation pathway signal K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D Rfer_3741 nitrate transport permease K15577 nrtB; nitrate/nitrite transport system permease protein
D Rfer_2555 nitrate transport permease K15577 nrtB; nitrate/nitrite transport system permease protein
D Rfer_2556 nitrate transport ATP-binding subunits C and D K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rfer_3740 ABC transporter related K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D Rfer_1779 ABC transporter, substrate-binding protein, aliphatic sulphonates K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1778 ABC transporter, substrate-binding protein, aliphatic sulphonates K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_3116 ABC transporter, substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1460 Twin-arginine translocation pathway signal K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_2748 extracellular solute-binding protein, family 3 K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_3118 ABC transporter, substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D Rfer_1776 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_3114 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_2746 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D Rfer_1775 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_2747 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_3115 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D Rfer_2758 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D Rfer_1594 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D Rfer_1595 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D Rfer_3246 ABC transporter periplasmic binding protein, thiB subfamily K02064 thiB; thiamine transport system substrate-binding protein
D Rfer_3245 binding-protein-dependent transport systems inner membrane component K02063 thiP; thiamine transport system permease protein
D Rfer_3244 ABC transporter related K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D Rfer_3222 extracellular solute-binding protein, family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D Rfer_3225 binding-protein-dependent transport systems inner membrane component K11070 potC; spermidine/putrescine transport system permease protein
D Rfer_3224 binding-protein-dependent transport systems inner membrane component K11071 potB; spermidine/putrescine transport system permease protein
D Rfer_3223 ABC transporter related K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D Rfer_0352 extracellular solute-binding protein, family 1 K11073 potF; putrescine transport system substrate-binding protein
D Rfer_0355 binding-protein-dependent transport systems inner membrane component K11074 potI; putrescine transport system permease protein
D Rfer_0354 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D Rfer_0353 spermidine/putrescine ABC transporter ATP-binding subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D Rfer_0883 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Rfer_0594 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Rfer_3242 extracellular solute-binding protein, family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D Rfer_0887 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D Rfer_0596 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D Rfer_0888 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D Rfer_0595 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D Rfer_0889 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D Rfer_0593 spermidine/putrescine ABC transporter ATP-binding subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D Rfer_1854 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D Rfer_1855 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Rfer_1857 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D Rfer_1856 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D Rfer_1103 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_0955 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_1094 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_1107 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D Rfer_1097 extracellular solute-binding protein, family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein
D Rfer_1110 extracellular solute-binding protein, family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein
D Rfer_1109 binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein
D Rfer_1096 binding-protein-dependent transport systems inner membrane component K17316 gtsB; glucose/mannose transport system permease protein
D Rfer_1108 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D Rfer_1095 binding-protein-dependent transport systems inner membrane component K17317 gtsC; glucose/mannose transport system permease protein
D Rfer_1099 extracellular solute-binding protein, family 1 K10240 cebE; cellobiose transport system substrate-binding protein
D Rfer_1100 binding-protein-dependent transport systems inner membrane component K10241 cebF; cellobiose transport system permease protein
D Rfer_1101 binding-protein-dependent transport systems inner membrane component K10242 cebG; cellobiose transport system permease protein
D Rfer_1903 periplasmic binding protein/LacI transcriptional regulator K10552 frcB; fructose transport system substrate-binding protein
D Rfer_1902 inner-membrane translocator K10553 frcC; fructose transport system permease protein
D Rfer_1901 ABC transporter related K10554 frcA; fructose transport system ATP-binding protein
D Rfer_0438 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Rfer_3131 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D Rfer_3130 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D Rfer_0123 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D Rfer_0439 inner-membrane translocator K10440 rbsC; ribose transport system permease protein
D Rfer_3129 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rfer_0124 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rfer_0437 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D Rfer_3671 extracellular solute-binding protein, family 1 K17321 glpV; glycerol transport system substrate-binding protein
D Rfer_3674 binding-protein-dependent transport systems inner membrane component K17322 glpP; glycerol transport system permease protein
D Rfer_3673 binding-protein-dependent transport systems inner membrane component K17323 glpQ; glycerol transport system permease protein
D Rfer_3676 ABC transporter related K17324 glpS; glycerol transport system ATP-binding protein
D Rfer_3675 ABC transporter related K17325 glpT; glycerol transport system ATP-binding protein
D Rfer_1287 extracellular solute-binding protein, family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D Rfer_1286 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D Rfer_1285 Twin-arginine translocation pathway signal K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D Rfer_1284 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D Rfer_3163 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Rfer_3296 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins
D Rfer_3165 inner-membrane translocator K23535 nupB; general nucleoside transport system permease protein
D Rfer_3164 inner-membrane translocator K23536 nupC; general nucleoside transport system permease protein
D Rfer_3166 ABC transporter related K23537 nupA; general nucleoside transport system ATP-binding protein
D Rfer_2937 Mammalian cell entry related K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rfer_3915 Mammalian cell entry related K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rfer_1223 ABC-type transport system periplasmic component K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D Rfer_2936 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rfer_3917 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rfer_1224 ABC-type transport system ipermease component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D Rfer_2935 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rfer_3916 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D Rfer_3914 putative lipoprotein K18480 linN; cholesterol transport system auxiliary component
D Rfer_2063 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_2939 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_0810 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_3630 toluene tolerance K07323 mlaC; phospholipid transport system substrate-binding protein
D Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS K07122 mlaB; phospholipid transport system transporter-binding protein
D Rfer_0954 extracellular solute-binding protein, family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D Rfer_0953 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D Rfer_0952 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D Rfer_0583 Periplasmic phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D Rfer_0582 Phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D Rfer_0581 Phosphate transport system permease protein 2 K02038 pstA; phosphate transport system permease protein
D Rfer_0580 Phosphate transport system permease protein 1 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D Rfer_0184 Phosphonate-binding periplasmic protein K02044 phnD; phosphonate transport system substrate-binding protein
D Rfer_1615 Phosphonate-binding periplasmic protein K02044 phnD; phosphonate transport system substrate-binding protein
D Rfer_1617 Phosphonate uptake transporter K02042 phnE; phosphonate transport system permease protein
D Rfer_1618 Phosphonate uptake transporter K02042 phnE; phosphonate transport system permease protein
D Rfer_0183 Phosphonate uptake transporter K02042 phnE; phosphonate transport system permease protein
D Rfer_0185 Phosphonate ABC transporter PhnC, ATP-binding K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rfer_1616 ABC transporter related K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D Rfer_2324 extracellular solute-binding protein, family 3 K09969 aapJ; general L-amino acid transport system substrate-binding protein
D Rfer_2325 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K09970 aapQ; general L-amino acid transport system permease protein
D Rfer_2326 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K09971 aapM; general L-amino acid transport system permease protein
D Rfer_2327 ABC transporter related K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_1525 extracellular solute-binding protein, family 3 K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D Rfer_1523 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K10023 aotM; arginine/ornithine transport system permease protein
D Rfer_1524 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K10024 aotQ; arginine/ornithine transport system permease protein
D Rfer_1521 ABC transporter related K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_1077 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0214 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0269 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0288 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1487 putative transporter signal peptide protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2119 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2392 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_4065 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3230 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2391 extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1838 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3504 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_3538 conserved hypothetical protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1012 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_0371 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2589 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_2810 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1005 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D Rfer_1078 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0213 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0268 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0289 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_2390 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3172 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_2588 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_4063 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1003 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1837 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3499 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_3540 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_1013 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D Rfer_0212 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_0267 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0290 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_2389 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_3171 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_4064 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1004 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1079 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1836 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3500 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_3539 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_2587 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1014 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D Rfer_1075 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0211 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_0291 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_2388 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3170 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_2586 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1001 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3501 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_3541 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_4062 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1015 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D Rfer_1076 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0210 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0266 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_0292 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_2387 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3169 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_4066 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1002 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1835 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3502 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_3537 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_2585 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D Rfer_1770 Lipoprotein YaeC K02073 metQ; D-methionine transport system substrate-binding protein
D Rfer_1771 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D Rfer_1772 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D Rfer_3381 twin-arginine translocation pathway signal K11959 urtA; urea transport system substrate-binding protein
D Rfer_3380 inner-membrane translocator K11960 urtB; urea transport system permease protein
D Rfer_3379 inner-membrane translocator K11961 urtC; urea transport system permease protein
D Rfer_3378 ABC transporter related K11962 urtD; urea transport system ATP-binding protein
D Rfer_3377 ABC transporter related K11963 urtE; urea transport system ATP-binding protein
D Rfer_0965 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_0232 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_0236 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_1029 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_2969 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_0161 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_4160 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_3251 conserved hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_3807 extracellular solute-binding protein, family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D Rfer_0966 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_0967 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_0233 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_0237 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_0238 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_0162 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_0163 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_2970 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_1031 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_1032 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_3808 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_4159 Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine K02029 ABC.PA.P; polar amino acid transport system permease protein
D Rfer_0968 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_0234 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_0239 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_0164 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_1030 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_2971 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_4158 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_3809 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D Rfer_1949 extracellular solute-binding protein, family 5 K12368 dppA; dipeptide transport system substrate-binding protein
D Rfer_1953 binding-protein-dependent transport systems inner membrane component K12369 dppB; dipeptide transport system permease protein
D Rfer_1952 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D Rfer_1951 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K12371 dppD; dipeptide transport system ATP-binding protein
D Rfer_1950 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K12372 dppF; dipeptide transport system ATP-binding protein
D Rfer_3103 extracellular solute-binding protein, family 5 K13889 gsiB; glutathione transport system substrate-binding protein
D Rfer_3104 binding-protein-dependent transport systems inner membrane component K13890 gsiC; glutathione transport system permease protein
D Rfer_3105 binding-protein-dependent transport systems inner membrane component K13891 gsiD; glutathione transport system permease protein
D Rfer_3102 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K13892 gsiA; glutathione transport system ATP-binding protein
D Rfer_0985 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rfer_0934 Twin-arginine translocation pathway signal K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D Rfer_0933 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rfer_0984 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D Rfer_0932 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rfer_0983 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D Rfer_0982 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rfer_0931 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031 ddpD; peptide/nickel transport system ATP-binding protein
D Rfer_0930 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rfer_0981 Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02032 ddpF; peptide/nickel transport system ATP-binding protein
D Rfer_2128 extracellular solute-binding protein, family 5 K13893 yejA; microcin C transport system substrate-binding protein
D Rfer_2129 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D Rfer_2130 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D Rfer_2131 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein
D Rfer_2623 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D Rfer_2621 periplasmic binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D Rfer_2620 transport system permease protein K25027 btuC; cobalamin transport system permease protein
D Rfer_2619 ABC transporter related K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D Rfer_2051 periplasmic solute binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D Rfer_2052 ABC-3 K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D Rfer_2053 ABC transporter related K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D Rfer_2115 permease YjgP/YjgQ K07091 lptF; lipopolysaccharide export system permease protein
D Rfer_2114 permease YjgP/YjgQ K11720 lptG; lipopolysaccharide export system permease protein
D Rfer_0777 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D Rfer_3557 ABC-2 type transporter, NodJ family K09694 nodJ; lipooligosaccharide transport system permease protein
D Rfer_3558 ABC transporter related K09695 nodI; lipooligosaccharide transport system ATP-binding protein
D Rfer_3202 putative transmembrane protein K19341 nosY; Cu-processing system permease protein
D Rfer_3201 ABC transporter related K19340 nosF; Cu-processing system ATP-binding protein
D Rfer_0857 ABC-2 K25180 ybhR; drug efflux transport system permease protein
D Rfer_0858 ABC-2 K25181 ybhS; drug efflux transport system permease protein
D Rfer_0860 ABC transporter related K25182 ybhF; drug efflux transport system ATP-binding protein
D Rfer_0859 ABC transporter related K25182 ybhF; drug efflux transport system ATP-binding protein
D Rfer_0861 secretion protein HlyD K25183 ybhG; membrane fusion protein YbhG
D Rfer_3232 Lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D Rfer_3231 Lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D Rfer_0042 Heme exporter protein D (CcmD) K02196 ccmD; heme exporter protein D
D Rfer_0043 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D Rfer_0044 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D Rfer_0045 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D Rfer_2942 ABC-2 K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rfer_3970 ABC-2 K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rfer_0171 ABC-2 K01992 ABC-2.P; ABC-2 type transport system permease protein
D Rfer_2941 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rfer_3971 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D Rfer_1701 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Rfer_1527 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Rfer_3624 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Rfer_3255 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Rfer_3187 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Rfer_1941 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D Rfer_1534 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rfer_2425 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rfer_3625 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rfer_3186 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rfer_1942 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D Rfer_1861 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D Rfer_3309 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D Rfer_2790 major facilitator superfamily MFS_1 K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rfer_2791 nitrate/nitrite antiporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D Rfer_0487 major facilitator superfamily MFS_1 K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D Rfer_0516 major facilitator superfamily MFS_1 K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D Rfer_1536 Drug resistance transporter Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Rfer_1220 Drug resistance transporter Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D Rfer_1516 Drug resistance transporter EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D Rfer_1894 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D Rfer_0603 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D Rfer_0602 HPrNtr K02784 ptsH; phosphocarrier protein HPr
D Rfer_0601 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D Rfer_0751 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D Rfer_0473 ammonium transporter K03320 amt; ammonium transporter, Amt family
D Rfer_0519 Rh-like protein/ammonium transporter K03320 amt; ammonium transporter, Amt family
D Rfer_3112 putative glutathione S-transferase P subunit K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_3730 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_0047 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_4050 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_1089 glutathione S-transferase-like K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D Rfer_2967 glutathione S-transferase-like K03599 sspA; stringent starvation protein A
D Rfer_2776 protein of unknown function UPF0005 K19416 yccA; modulator of FtsH protease
D Rfer_2428 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D Rfer_2963 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D Rfer_2426 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D Rfer_3702 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Rfer_3703 OmpA/MotB K02557 motB; chemotaxis protein MotB
D Rfer_3153 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Rfer_0756 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Rfer_1120 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Rfer_1531 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Rfer_3174 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB
D Rfer_1118 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D Rfer_1119 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D Rfer_1532 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D Rfer_3154 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D Rfer_1157 MotA/TolQ/ExbB proton channel K03562 tolQ; biopolymer transport protein TolQ
D Rfer_2672 MotA/TolQ/ExbB proton channel K03562 tolQ; biopolymer transport protein TolQ
D Rfer_1158 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR
D Rfer_2673 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR
D Rfer_0757 Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR
D Rfer_3748 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D Rfer_3806 Mg2+ transporter protein, CorA-like K03284 corA; magnesium transporter
D Rfer_1559 camphor resistance protein CrcB K06199 crcB; fluoride exporter
D Rfer_3026 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rfer_1572 OmpA/MotB K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Rfer_1882 OmpA/MotB K03286 TC.OOP; OmpA-OmpF porin, OOP family
D Rfer_2706 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D Rfer_2705 putative lipase / esterase protein K12686 apeE; outer membrane lipase/esterase
D Rfer_2331 lipolytic enzyme, G-D-S-L K12686 apeE; outer membrane lipase/esterase
D Rfer_2036 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rfer_2625 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rfer_0619 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rfer_1115 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rfer_3396 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D Rfer_0413 outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D Rfer_2604 Type I secretion outer membrane protein, TolC K12340 tolC; outer membrane protein
D Rfer_3762 Type I secretion outer membrane protein, TolC K12543 lapE; outer membrane protein, adhesin transport system
D Rfer_2064 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT K18904 nodT; outer membrane protein, multidrug efflux system
D Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT K18904 nodT; outer membrane protein, multidrug efflux system
D Rfer_0658 polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D Rfer_1996 surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D Rfer_2304 Pyrrolo-quinoline quinone K17713 bamB; outer membrane protein assembly factor BamB
D Rfer_2096 NlpBDapX lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D Rfer_2315 putative transmembrane protein K05807 bamD; outer membrane protein assembly factor BamD
D Rfer_0754 SmpA/OmlA K06186 bamE; outer membrane protein assembly factor BamE
D Rfer_1592 surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D Rfer_1593 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB
D Rfer_3374 hypothetical protein K21449 ata; trimeric autotransporter adhesin
D Rfer_0776 OstA-like protein K09774 lptA; lipopolysaccharide export system protein LptA
D Rfer_4235 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC
D Rfer_0098 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D Rfer_0759 rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D Rfer_3698 CBS K06189 corC; hemolysin (HlyC) family protein
D Rfer_0585 amino acid permease-associated protein K16238 eat; ethanolamine permease
D Rfer_3644 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D Rfer_0411 Heavy metal efflux pump CzcA K07787 cusA; copper/silver efflux system protein
D Rfer_1552 acriflavin resistance protein K18303 mexK; multidrug efflux pump
D Rfer_2065 Hydrophobe/amphiphile efflux-1 HAE1 K18138 acrB; multidrug efflux pump
D Rfer_1080 protein of unknown function DUF6, transmembrane K15268 eamA; O-acetylserine/cysteine efflux transporter
D Rfer_4018 rarD protein K05786 rarD; chloramphenicol-sensitive protein RarD
D Rfer_3567 2-keto-3-deoxygluconate permease K02526 kdgT; 2-keto-3-deoxygluconate permease
D Rfer_3845 anaerobic c4-dicarboxylate membrane transporter family protein K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D Rfer_3576 anaerobic c4-dicarboxylate membrane transporter family protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D Rfer_1133 sodium/calcium exchanger membrane protein K07301 yrbG; cation:H+ antiporter
D Rfer_3080 sodium/calcium exchanger membrane protein K07301 yrbG; cation:H+ antiporter
D Rfer_2192 Na+/solute symporter K14393 actP; cation/acetate symporter
D Rfer_3782 SSS sodium solute transporter superfamily K14393 actP; cation/acetate symporter
D Rfer_1440 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D Rfer_2582 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D Rfer_1397 sodium/hydrogen exchanger K24160 NHA1; sodium/hydrogen antiporter
D Rfer_2542 Potassium efflux system protein K11745 kefC; glutathione-regulated potassium-efflux system protein KefC
D Rfer_4238 sodium/hydrogen exchanger K03455 KEA1_2_3; K+:H+ antiporter
D Rfer_1098 sodium/hydrogen exchanger K26731 CHX; K+:H+ antiporter
D Rfer_0069 uracil-xanthine permease K09016 rutG; putative pyrimidine permease RutG
D Rfer_1155 Cl-channel, voltage gated K03281 clcA; chloride channel protein, CIC family
D Rfer_2757 Chromate transporter K07240 chrA; chromate transporter
D Rfer_2447 Chromate transporter K07240 chrA; chromate transporter
D Rfer_2824 Chromate transporter K07240 chrA; chromate transporter
D Rfer_2756 Chromate transporter K07240 chrA; chromate transporter
D Rfer_1483 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_1484 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_3481 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_4184 TRAP dicarboxylate transporter, DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_4196 TRAP dicarboxylate transporter-DctP subunit K11688 dctP; C4-dicarboxylate-binding protein DctP
D Rfer_4174 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_1482 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_3482 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_4195 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D Rfer_1481 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_4175 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_0448 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_3483 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_4194 TRAP dicarboxylate transporter-DctM subunit K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D Rfer_2570 Twin-arginine translocation pathway signal K21395 yiaO; TRAP-type transport system periplasmic protein
D Rfer_1430 Na/Pi cotransporter II-related K03324 yjbB; phosphate:Na+ symporter
D Rfer_3664 arsenite-activated ATPase (arsA) K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D Rfer_3663 Bile acid:sodium symporter K03325 ACR3; arsenite transporter
D Rfer_0691 polysaccharide biosynthesis protein K16695 wzxC; lipopolysaccharide exporter
D Rfer_2123 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D Rfer_2056 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D Rfer_2655 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D Rfer_0764 K+ potassium transporter K03549 kup; KUP system potassium uptake protein
D Rfer_2539 K+ potassium transporter K03549 kup; KUP system potassium uptake protein
D Rfer_2057 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO
D Rfer_3462 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein
D Rfer_3113 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein
D Rfer_2005 Lysine exporter protein (LYSE/YGGA) K11250 leuE; leucine efflux protein
D Rfer_2862 AzlC-like K26605 azlC; branched chain amino acid efflux pump
D Rfer_2863 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump
D Rfer_3212 protein of unknown function DUF112, transmembrane K07793 tctA; putative tricarboxylic transport membrane protein
D Rfer_1963 protein of unknown function DUF125, transmembrane K22736 VIT; vacuolar iron transporter family protein
D Rfer_3813 multiple antibiotic resistance (MarC)-related proteins K05595 marC; multiple antibiotic resistance protein
D Rfer_3426 cell cycle protein K03588 ftsW; cell division protein FtsW
D Rfer_0520 protein of unknown function UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D Rfer_3306 iron permease FTR1 K07243 FTR; high-affinity iron transporter
D Rfer_0192 conserved hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein
D Rfer_3173 conserved hypothetical protein K03832 tonB; periplasmic protein TonB
D Rfer_3412 TonB-like K03832 tonB; periplasmic protein TonB
D Rfer_1117 conserved hypothetical protein K03832 tonB; periplasmic protein TonB
D Rfer_1425 hypothetical protein K03832 tonB; periplasmic protein TonB
D Rfer_1153 OmpA/MotB K03640 pal; peptidoglycan-associated lipoprotein
D Rfer_2093 OmpA/MotB K03640 pal; peptidoglycan-associated lipoprotein
D Rfer_1159 TonB-like K03646 tolA; colicin import membrane protein
D Rfer_2674 TonB-like K03646 tolA; colicin import membrane protein
D Rfer_2092 TolB-like K03641 tolB; TolB protein
D Rfer_1472 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D Rfer_1843 alpha subunit of malonate decarboxylase K13929 mdcA; malonate decarboxylase alpha subunit [EC:2.3.1.187]
D Rfer_1844 malonate decarboxylase delta subunit K13931 mdcC; malonate decarboxylase delta subunit
D Rfer_1597 cytochrome c biogenesis protein, transmembrane protein K06196 ccdA; cytochrome c-type biogenesis protein
D Rfer_2792 respiratory nitrate reductase alpha subunit apoprotein K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2793 respiratory nitrate reductase beta subunit K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_2795 respiratory nitrate reductase gamma subunit K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D Rfer_3085 Twin-arginine translocation pathway signal K08355 aoxA; arsenite oxidase small subunit [EC:1.20.2.1 1.20.9.1]
D Rfer_3084 Arsenate reductase (azurin) K08356 aoxB; arsenite oxidase large subunit [EC:1.20.2.1 1.20.9.1]
D Rfer_1515 secretion protein HlyD K03543 emrA; membrane fusion protein, multidrug efflux system
D Rfer_0412 Secretion protein HlyD K07798 cusB; membrane fusion protein, copper/silver efflux system
D Rfer_2714 Type I secretion membrane fusion protein, HlyD K11003 hlyD; membrane fusion protein, hemolysin D
D Rfer_3769 Type I secretion membrane fusion protein, HlyD K12542 lapC; membrane fusion protein, adhesin transport system
D Rfer_0380 secretion protein HlyD K21135 mexM; membrane fusion protein, multidrug efflux system
D Rfer_2066 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D Rfer_3761 secretion protein HlyD K21137 triB; membrane fusion protein, multidrug efflux system
D Rfer_1278 phage integrase K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D Rfer_0660 Protein-tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D Rfer_0659 lipopolysaccharide biosynthesis K25590 epsF; protein tyrosine kinase modulator
D Rfer_0063 FeoA K04758 feoA; ferrous iron transport protein A
D Rfer_0064 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D Rfer_0040 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:rfr02044]
D Rfer_2722 ABC transporter related K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D Rfer_2714 Type I secretion membrane fusion protein, HlyD K11003 hlyD; membrane fusion protein, hemolysin D
D Rfer_2604 Type I secretion outer membrane protein, TolC K12340 tolC; outer membrane protein
D Rfer_3770 ABC transporter related K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D Rfer_3769 Type I secretion membrane fusion protein, HlyD K12542 lapC; membrane fusion protein, adhesin transport system
D Rfer_3762 Type I secretion outer membrane protein, TolC K12543 lapE; outer membrane protein, adhesin transport system
D Rfer_0662 ATPase K02450 gspA; general secretion pathway protein A
D Rfer_0082 hypothetical protein K02451 gspB; general secretion pathway protein B
D Rfer_0533 hypothetical protein K02452 gspC; general secretion pathway protein C
D Rfer_0542 type II and III secretion system protein K02453 gspD; general secretion pathway protein D
D Rfer_0543 type II secretion system protein E (GspE) K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rfer_3214 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rfer_4246 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D Rfer_0544 General secretion pathway protein F K02455 gspF; general secretion pathway protein F
D Rfer_0534 General secretion pathway protein G K02456 gspG; general secretion pathway protein G
D Rfer_0535 General secretion pathway protein H K02457 gspH; general secretion pathway protein H
D Rfer_0536 General secretion pathway protein I K02458 gspI; general secretion pathway protein I
D Rfer_0537 methylation K02459 gspJ; general secretion pathway protein J
D Rfer_0538 General secretion pathway protein K K02460 gspK; general secretion pathway protein K
D Rfer_0539 hypothetical protein K02461 gspL; general secretion pathway protein L
D Rfer_0540 hypothetical protein K02462 gspM; general secretion pathway protein M
D Rfer_0541 putative general secretory pathway N transmembrane protein K02463 gspN; general secretion pathway protein N
D Rfer_2904 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rfer_1265 methylation K02650 pilA; type IV pilus assembly protein PilA
D Rfer_2902 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D Rfer_2903 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D Rfer_2664 methylation K02655 pilE; type IV pilus assembly protein PilE
D Rfer_2309 TPR repeat protein K02656 pilF; type IV pilus assembly protein PilF
D Rfer_1371 response regulator receiver domain protein K02657 pilG; twitching motility two-component system response regulator PilG
D Rfer_1372 response regulator receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D Rfer_1373 CheW-like protein K02659 pilI; twitching motility protein PilI
D Rfer_1374 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ
D Rfer_2919 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Rfer_2920 Fimbrial assembly K02663 pilN; type IV pilus assembly protein PilN
D Rfer_2921 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO
D Rfer_2922 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP
D Rfer_2923 type II and III secretion system protein K02666 pilQ; type IV pilus assembly protein PilQ
D Rfer_3878 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT
D Rfer_4493 type II secretion system protein E K02669 pilT; twitching motility protein PilT
D Rfer_2045 twitching motility protein K02670 pilU; twitching motility protein PilU
D Rfer_3877 twitching motility protein K02670 pilU; twitching motility protein PilU
D Rfer_2660 methylation K02671 pilV; type IV pilus assembly protein PilV
D Rfer_2661 putative transmembrane protein K02672 pilW; type IV pilus assembly protein PilW
D Rfer_2662 putative transmembrane protein K02673 pilX; type IV pilus assembly protein PilX
D Rfer_2663 putative type-4 fimbrial biogenesis pily1-related signal peptide protein K02674 pilY1; type IV pilus assembly protein PilY1
D Rfer_2257 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Rfer_2665 methylation K08084 fimT; type IV fimbrial biogenesis protein FimT
D Rfer_1791 peptidoglycan-binding LysM K08086 fimV; pilus assembly protein FimV
D Rfer_0790 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D Rfer_0792 Flp pilus assembly CpaB K02279 cpaB; pilus assembly protein CpaB
D Rfer_0793 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D Rfer_0798 response regulator receiver domain protein K02282 cpaE; pilus assembly protein CpaE
D Rfer_0799 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rfer_4263 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rfer_0800 type II secretion system protein K12510 tadB; tight adherence protein B
D Rfer_0801 type II secretion system protein K12511 tadC; tight adherence protein C
D Rfer_0788 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D Rfer_0789 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D Rfer_3341 methylation K10926 mshC; MSHA pilin protein MshC
D Rfer_3340 conserved hypothetical protein K10927 mshD; MSHA pilin protein MshD
D Rfer_3360 type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE
D Rfer_4400 type II secretion system protein E K12276 mshE; MSHA biogenesis protein MshE
D Rfer_3361 type II secretion system protein K12278 mshG; MSHA biogenesis protein MshG
D Rfer_3336 hypothetical protein K12279 mshI; MSHA biogenesis protein MshI
D Rfer_3334 hypothetical protein K12280 mshJ; MSHA biogenesis protein MshJ
D Rfer_3332 type II and III secretion system protein K12282 mshL; MSHA biogenesis protein MshL
D Rfer_4402 type II and III secretion system protein K12282 mshL; MSHA biogenesis protein MshL
D Rfer_3331 general secretion pathway protein, ATPase K12283 mshM; MSHA biogenesis protein MshM
D Rfer_3330 TPR repeat protein K12284 mshN; MSHA biogenesis protein MshN
D Rfer_3339 methylation K12285 mshO; MSHA biogenesis protein MshO
D Rfer_3338 conserved hypothetical protein K12286 mshP; MSHA biogenesis protein MshP
D Rfer_3337 conserved hypothetical protein K12287 mshQ; MSHA biogenesis protein MshQ
D Rfer_1785 protein of unknown function YGGT K02221 yggT; YggT family protein
D Rfer_1920 conserved hypothetical protein K02237 comEA; competence protein ComEA
D Rfer_4078 conserved hypothetical protein K02237 comEA; competence protein ComEA
D Rfer_2476 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D Rfer_3707 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Rfer_3706 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB
D Rfer_0550 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Rfer_0552 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D Rfer_0553 ATPase FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Rfer_0558 Flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D Rfer_0559 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Rfer_0560 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Rfer_0561 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Rfer_0562 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Rfer_4267 Relaxase K12070 traI; conjugal transfer pilus assembly protein TraI
D Rfer_4266 conserved hypothetical protein K12071 traD; conjugal transfer pilus assembly protein TraD
D Rfer_1575 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D Rfer_4262 conjugal transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC
D Rfer_4261 hypothetical protein K20529 trbD; type IV secretion system protein TrbD
D Rfer_4260 Type IV secretory pathway VirB4 components-like K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D Rfer_4254 Type IV secretory pathway component VirB8-like K20531 trbF; type IV secretion system protein TrbF
D Rfer_4253 Conjugal transfer protein TrbG/VirB9/CagX K20532 trbG; type IV secretion system protein TrbG
D Rfer_4252 conjugation TrbI-like protein K20533 trbI; type IV secretion system protein TrbI
D Rfer_4259 hypothetical protein K20266 trbJ; type IV secretion system protein TrbJ
D Rfer_4258 hypothetical protein K07344 trbL; type IV secretion system protein TrbL
D Rfer_2705 putative lipase / esterase protein K12686 apeE; outer membrane lipase/esterase
D Rfer_2331 lipolytic enzyme, G-D-S-L K12686 apeE; outer membrane lipase/esterase
D Rfer_2911 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D Rfer_1312 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D Rfer_3866 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D Rfer_3598 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D Rfer_3865 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D Rfer_1492 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D Rfer_4223 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D Rfer_3342 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D Rfer_1672 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D Rfer_3867 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D Rfer_4242 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D Rfer_2956 twin-arginine translocation protein, TatA/E family K03116 tatA; sec-independent protein translocase protein TatA
D Rfer_2957 twin-arginine translocation protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D Rfer_2958 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rfr02042]
D Rfer_3026 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D Rfer_3869 channel protein, hemolysin III family K11068 hlyIII; hemolysin III
D Rfer_3735 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
D Rfer_3736 Twin-arginine translocation pathway signal K01114 plc; phospholipase C [EC:3.1.4.3]
C 02022 Two-component system [BR:rfr02022]
D Rfer_0577 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D Rfer_0578 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D Rfer_3778 response regulator receiver domain protein K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D Rfer_3684 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Rfer_3685 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Rfer_2733 periplasmic sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D Rfer_2732 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D Rfer_0509 periplasmic sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D Rfer_0423 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D Rfer_0422 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D Rfer_0504 periplasmic sensor signal transduction histidine kinase K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D Rfer_0503 two component transcriptional regulator, winged helix family K07666 qseB; two-component system, OmpR family, response regulator QseB
D Rfer_2541 periplasmic sensor signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D Rfer_2540 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D Rfer_3121 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3951 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3522 periplasmic sensor signal transduction histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
D Rfer_3120 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD
D Rfer_2401 two component transcriptional regulator, winged helix family K07774 tctD; two-component system, OmpR family, response regulator TctD
D Rfer_3821 periplasmic sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D Rfer_3950 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Rfer_3646 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Rfer_1091 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Rfer_2270 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Rfer_3523 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Rfer_3820 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D Rfer_1870 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D Rfer_1869 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Rfer_0782 two component transcriptional regulator, LuxR family K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL
D Rfer_0563 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rfer_1539 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rfer_3743 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D Rfer_1711 histidine kinase internal protein K08082 algZ; two-component system, LytTR family, sensor histidine kinase AlgZ [EC:2.7.13.3]
D Rfer_1712 transcriptional regulator, LytR/AlgR family K08083 algR; two-component system, LytTR family, response regulator AlgR
D Rfer_2453 histidine kinase internal protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D Rfer_2452 transcriptional regulator, LytR/AlgR family K02477 K02477; two-component system, LytTR family, response regulator
D Rfer_2981 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D Rfer_2982 nitrogen metabolism transcriptional regulator, NtrC, Fis family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D Rfer_3588 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D Rfer_3587 response regulator receiver domain protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D Rfer_3096 periplasmic sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D Rfer_0247 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Rfer_2854 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC
D Rfer_3344 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rfer_3345 two component, sigma54 specific, transcriptional regulator, Fis family K02667 pilR; two-component system, NtrC family, response regulator PilR
D Rfer_2788 periplasmic sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D Rfer_2786 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D Rfer_3454 histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D Rfer_3453 two component, sigma54 specific, transcriptional regulator, Fis family K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D Rfer_4122 PAS/PAC sensor signal transduction histidine kinase K19661 hupT; two-component system, NtrC family, sensor histidine kinase HupT/HoxJ [EC:2.7.13.3]
D Rfer_4102 two component, sigma54 specific, transcriptional regulator, Fis family K19641 hupR; two-component system, NtrC family, response regulator HupR/HoxA
D Rfer_4101 formyl transferase-like K19640 hypX; putative two-component system protein, hydrogenase maturation factor HypX/HoxX
D Rfer_2742 periplasmic sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_0246 histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_1978 PAS/PAC sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_3574 periplasmic sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D Rfer_2741 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator
D Rfer_0704 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator
D Rfer_0901 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0567 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0899 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_0566 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_3704 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_0571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_0906 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_2357 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_3013 MCP methyltransferase, CheR-type K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_0364 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Rfer_1375 CheA signal transduction histidine kinases K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rfer_1371 response regulator receiver domain protein K02657 pilG; twitching motility two-component system response regulator PilG
D Rfer_1372 response regulator receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D Rfer_1485 multi-sensor signal transduction histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rfer_0922 multi-sensor signal transduction histidine kinase K11711 dctS; two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
D Rfer_1486 two component transcriptional regulator, LuxR family K11712 dctR; two-component system, LuxR family, response regulator DctR
D Rfer_0921 two component transcriptional regulator, LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D Rfer_3083 periplasmic sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Rfer_1136 periplasmic sensor signal transduction histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
D Rfer_2553 response regulator receiver and ANTAR domain protein K07183 nasT; two-component system, response regulator / RNA-binding antiterminator
D Rfer_1826 response regulator receiver domain protein K02485 rssB; two-component system, response regulator
D Rfer_1768 multi-sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
D Rfer_2263 periplasmic sensor hybrid histidine kinase K11527 K11527; two-component system, sensor histidine kinase and response regulator [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:rfr02035]
D Rfer_0901 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0567 CheA signal transduction histidine kinases K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D Rfer_0991 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0903 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0568 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_1476 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_0924 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D Rfer_1888 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC
D Rfer_0905 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Rfer_0570 CheD, stimulates methylation of MCP proteins K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D Rfer_0569 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Rfer_0904 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D Rfer_0571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_0906 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_2357 CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D Rfer_3013 MCP methyltransferase, CheR-type K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor K13924 cheBR; two-component system, chemotaxis family, CheB/CheR fusion protein [EC:2.1.1.80 3.1.1.61]
D Rfer_0899 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_0566 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_3704 response regulator receiver domain protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D Rfer_3705 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D Rfer_0364 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D Rfer_0898 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0902 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3137 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3610 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3449 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3937 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0925 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_3609 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2354 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_1480 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2225 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_2507 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D Rfer_0120 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D Rfer_0552 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D Rfer_0553 ATPase FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D Rfer_0554 Flagellar export FliJ K02413 fliJ; flagellar protein FliJ
D Rfer_0559 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ
D Rfer_0560 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D Rfer_0561 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D Rfer_0562 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D Rfer_3707 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D Rfer_3706 type III secretion exporter K02401 flhB; flagellar biosynthesis protein FlhB
D Rfer_0551 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D Rfer_0557 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D Rfer_0558 Flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D Rfer_0550 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D Rfer_3721 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D Rfer_3713 Flageller protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D Rfer_3720 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D Rfer_0556 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D Rfer_0549 flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE
D Rfer_0555 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D Rfer_3714 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D Rfer_3715 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D Rfer_3716 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D Rfer_3718 Flagellar basal-body rod FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D Rfer_3719 Flagellar basal-body rod FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D Rfer_3722 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase K02395 flgJ; peptidoglycan hydrolase FlgJ
D Rfer_3717 protein of unknown function DUF1078-like K02390 flgE; flagellar hook protein FlgE
D Rfer_3723 Flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D Rfer_3724 flagellin-like K02397 flgL; flagellar hook-associated protein 3 FlgL
D Rfer_0630 flagellin-like K02406 fliC; flagellin
D Rfer_0631 flagellin-like K02406 fliC; flagellin
D Rfer_0632 flagellar hook-associated 2-like K02407 fliD; flagellar hook-associated protein 2
D Rfer_0633 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D Rfer_0634 flagellar protein FliT K02423 fliT; flagellar protein FliT
D Rfer_3700 flagellar transcriptional activator FlhD K02403 flhD; flagellar transcriptional activator FlhD
D Rfer_3701 flagellar regulon master regulator subunit FlhC K02402 flhC; flagellar transcriptional activator FlhC
D Rfer_3710 sigma 28 (Flagella/Sporulation) K02405 fliA; RNA polymerase sigma factor FliA
D Rfer_3702 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D Rfer_3703 OmpA/MotB K02557 motB; chemotaxis protein MotB
D Rfer_3712 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D Rfer_3708 GTP-binding signal recognition particle SRP54, G-domain K02404 flhF; flagellar biosynthesis protein FlhF
D Rfer_1304 Cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG
D Rfer_1371 response regulator receiver domain protein K02657 pilG; twitching motility two-component system response regulator PilG
D Rfer_1372 response regulator receiver domain protein K02658 pilH; twitching motility two-component system response regulator PilH
D Rfer_1373 CheW-like protein K02659 pilI; twitching motility protein PilI
D Rfer_1374 methyl-accepting chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ
D Rfer_1375 CheA signal transduction histidine kinases K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D Rfer_3345 two component, sigma54 specific, transcriptional regulator, Fis family K02667 pilR; two-component system, NtrC family, response regulator PilR
D Rfer_3344 multi-sensor signal transduction histidine kinase K02668 pilS; two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3]
D Rfer_3878 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT
D Rfer_4493 type II secretion system protein E K02669 pilT; twitching motility protein PilT
D Rfer_2045 twitching motility protein K02670 pilU; twitching motility protein PilU
D Rfer_3877 twitching motility protein K02670 pilU; twitching motility protein PilU
D Rfer_1265 methylation K02650 pilA; type IV pilus assembly protein PilA
D Rfer_2902 type II secretion system protein E K02652 pilB; type IV pilus assembly protein PilB
D Rfer_2903 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D Rfer_2904 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D Rfer_2309 TPR repeat protein K02656 pilF; type IV pilus assembly protein PilF
D Rfer_2923 type II and III secretion system protein K02666 pilQ; type IV pilus assembly protein PilQ
D Rfer_2922 Pilus assembly protein, PilQ K02665 pilP; type IV pilus assembly protein PilP
D Rfer_2921 Pilus assembly protein, PilO K02664 pilO; type IV pilus assembly protein PilO
D Rfer_2920 Fimbrial assembly K02663 pilN; type IV pilus assembly protein PilN
D Rfer_2919 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D Rfer_2257 type IV pilus assembly PilZ K02676 pilZ; type IV pilus assembly protein PilZ
D Rfer_2660 methylation K02671 pilV; type IV pilus assembly protein PilV
D Rfer_2661 putative transmembrane protein K02672 pilW; type IV pilus assembly protein PilW
D Rfer_2662 putative transmembrane protein K02673 pilX; type IV pilus assembly protein PilX
D Rfer_2663 putative type-4 fimbrial biogenesis pily1-related signal peptide protein K02674 pilY1; type IV pilus assembly protein PilY1
D Rfer_2664 methylation K02655 pilE; type IV pilus assembly protein PilE
D Rfer_0788 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D Rfer_0789 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA
D Rfer_0790 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D Rfer_0792 Flp pilus assembly CpaB K02279 cpaB; pilus assembly protein CpaB
D Rfer_0793 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D Rfer_0798 response regulator receiver domain protein K02282 cpaE; pilus assembly protein CpaE
D Rfer_0799 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D Rfer_4263 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rfr04812]
D Rfer_0398 protein of unknown function DUF52 K06990 MEMO1; MEMO1 family protein
D Rfer_3923 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Rfer_4487 hypothetical protein K18640 parM; plasmid segregation protein ParM
D Rfer_3420 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Rfer_3052 Twin-arginine translocation pathway signal K03531 ftsZ; cell division protein FtsZ
D Rfer_3421 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D Rfer_0036 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D Rfer_0035 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D Rfer_0034 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D Rfer_0051 chromosome segregation ATPase K03496 parA; chromosome partitioning protein
D Rfer_0468 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Rfer_1675 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Rfer_4285 ATPases involved in chromosome partitioning-like K03496 parA; chromosome partitioning protein
D Rfer_1355 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein
D Rfer_0053 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_4284 parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Rfer_4412 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rfr04147]
D Rfer_3551 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D Rfer_2650 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D Rfer_4111 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D Rfer_3690 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D Rfer_0205 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D Rfer_1346 peptidyl-prolyl cis-trans isomerase, cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D Rfer_1131 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_3009 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Rfer_0832 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D Rfer_1969 Chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D Rfer_1127 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D Rfer_2288 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D Rfer_3599 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Rfer_3797 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D Rfer_2955 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D Rfer_3898 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_4067 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3752 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3775 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3503 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3542 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2283 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0545 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_0321 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2479 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_3284 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D Rfer_2273 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2385 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2561 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1871 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2753 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3839 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0272 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_1000 Acetyl-CoA C-acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_3283 Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_2594 Acetyl-CoA C-acyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D Rfer_0652 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D Rfer_3158 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D Rfer_4239 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D Rfer_1710 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D Rfer_2689 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D Rfer_2704 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D Rfer_2162 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D Rfer_3678 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D Rfer_0350 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_2979 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D Rfer_3805 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D Rfer_1410 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D Rfer_2996 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1867 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D Rfer_1582 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D Rfer_1411 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D Rfer_2214 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_2319 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_0181 pyridine nucleotide-disulphide oxidoreductase dimerisation protein K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D Rfer_1958 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Rfer_4165 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit
D Rfer_1125 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rfer_4034 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D Rfer_1491 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D Rfer_1309 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:rfr02048]
D Rfer_3907 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D Rfer_4348 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D Rfer_3908 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2
D Rfer_3901 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D Rfer_3906 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D Rfer_3903 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1
D Rfer_3904 CRISPR-associated protein, Csd2 family K19118 csd2; CRISPR-associated protein Csd2
D Rfer_3902 CRISPR-associated protein, Csd5d family K19119 cas5d; CRISPR-associated protein Cas5d
D Rfer_4349 hypothetical protein K19126 casE; CRISPR system Cascade subunit CasE
D Rfer_0028 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rfer_4010 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rfer_1062 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rfer_1367 type III restriction enzyme, res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D Rfer_0030 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rfer_4007 Restriction endonuclease S subunits-like K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rfer_1060 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rfer_1366 putative type I site-specific restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D Rfer_1059 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rfer_0032 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rfer_4006 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rfer_1365 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D Rfer_4209 hypothetical protein K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
D Rfer_1822 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D Rfer_3077 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Rfer_1819 restriction endonuclease K07448 mrr; restriction system protein
D Rfer_1543 putative membrane protein K07448 mrr; restriction system protein
D Rfer_1750 conserved hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D Rfer_1749 RelB antitoxin K07473 dinJ; DNA-damage-inducible protein J
D Rfer_2987 CcdB-like toxin protein K19163 ccdB; toxin CcdB
D Rfer_2988 potential post-segregation antitoxin K19164 ccdA; antitoxin CcdA
D Rfer_3404 Death-on-curing protein K07341 doc; death on curing protein
D Rfer_4450 plasmid maintenance system killer K07334 higB-1; toxin HigB-1
D Rfer_4449 plasmid maintenance system antidote protein, XRE family K21498 higA-1; antitoxin HigA-1
D Rfer_0624 PilT protein-like K07062 fitB; toxin FitB [EC:3.1.-.-]
D Rfer_3420 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D Rfer_3052 Twin-arginine translocation pathway signal K03531 ftsZ; cell division protein FtsZ
D Rfer_3923 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D Rfer_2641 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D Rfer_2642 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D Rfer_2681 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D Rfer_1735 hypothetical protein K19168 cptA; toxin CptA
D Rfer_1797 protein of unknown function DUF339 K09159 cptB; antitoxin CptB
D Rfer_2177 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D Rfer_4334 conserved hypothetical protein K19170 dndC; DNA sulfur modification protein DndC
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:rfr04052]
D Rfer_3532 acyl-coA-binding protein, ACBP K08762 DBI; diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein)
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:rfr04090]
C 01504 Antimicrobial resistance genes [BR:rfr01504]
D Rfer_0248 putative hydrolase transmembrane protein K18235 vgb; virginiamycin B lyase [EC:4.2.99.-]
D Rfer_0423 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D Rfer_0422 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D Rfer_3684 periplasmic sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D Rfer_3685 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D Rfer_2066 secretion protein HlyD K03585 acrA; membrane fusion protein, multidrug efflux system
D Rfer_2065 Hydrophobe/amphiphile efflux-1 HAE1 K18138 acrB; multidrug efflux pump
D Rfer_2064 RND efflux system, outer membrane lipoprotein, NodT K18139 oprM; outer membrane protein, multidrug efflux system
D Rfer_1552 acriflavin resistance protein K18303 mexK; multidrug efflux pump
D Rfer_0023 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Rfer_2604 Type I secretion outer membrane protein, TolC K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rfr00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rfr03100]
D Rfer_R0032 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0002 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0051 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0056 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D Rfer_R0034 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0001 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0017 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D Rfer_R0008 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D Rfer_R0030 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D Rfer_R0014 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D Rfer_R0018 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D Rfer_R0031 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D Rfer_R0003 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rfer_R0013 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rfer_R0047 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D Rfer_R0024 tRNA-His K14226 tRNA-His; tRNA His
D Rfer_R0052 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rfer_R0057 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D Rfer_R0026 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0011 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0012 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D Rfer_R0040 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rfer_R0035 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D Rfer_R0016 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rfer_R0059 tRNA-Met K14230 tRNA-Met; tRNA Met
D Rfer_R0044 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D Rfer_R0004 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rfer_R0005 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rfer_R0025 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D Rfer_R0006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0041 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0021 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D Rfer_R0046 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rfer_R0037 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rfer_R0033 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D Rfer_R0045 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D Rfer_R0048 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D Rfer_R0023 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rfer_R0022 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rfer_R0027 tRNA-Val K14237 tRNA-Val; tRNA Val
D Rfer_R0053 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rfer_R0058 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D Rfer_R0050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rfer_R0055 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D Rfer_R0049 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rfer_R0054 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D Rfer_R0009 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA
D Rfer_R0043 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D Rfer_R0036 ssrA; prediction based on tmRNA website at Indiana University K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D Rfer_3565 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D Rfer_0451 NAD-dependent epimerase/dehydratase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D Rfer_0446 3-hydroxyisobutyrate dehydrogenase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411]
D Rfer_0342 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D Rfer_3965 Pyruvate dehydrogenase (lipoamide) K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D Rfer_2505 Twin-arginine translocation pathway signal K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D Rfer_3966 Transketolase K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D Rfer_2504 Transketolase-like K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D Rfer_2109 glucose sorbosone dehydrogenase K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D Rfer_0048 aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D Rfer_3868 pyruvate ferredoxin/flavodoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
D Rfer_1891 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D Rfer_0018 Alcohol dehydrogenase, zinc-binding K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D Rfer_2491 Alcohol dehydrogenase, zinc-binding K23256 curA; NADPH-dependent curcumin reductase [EC:1.3.1.-]
D Rfer_2534 NADP oxidoreductase, coenzyme F420-dependent K06988 fno; 8-hydroxy-5-deazaflavin:NADPH oxidoreductase [EC:1.5.1.40]
D Rfer_2269 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D Rfer_3018 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D Rfer_4163 Electron-transferring-flavoprotein dehydrogenase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D Rfer_1906 UDP-galactopyranose mutase K18208 RNLS; renalase [EC:1.6.3.5]
D Rfer_2783 Alcohol dehydrogenase, zinc-binding K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Rfer_1429 Alcohol dehydrogenase, zinc-binding K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Rfer_1490 Alcohol dehydrogenase, zinc-binding K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D Rfer_1008 2-nitropropane dioxygenase, NPD K23948 E1.6.5.9; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D Rfer_0809 (Acyl-carrier protein) phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D Rfer_2598 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D Rfer_2396 Protein-methionine-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D Rfer_4017 glutathione S-transferase-like K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D Rfer_2631 glutathione S-transferase-like K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D Rfer_2914 oxidoreductase, molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D Rfer_3123 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D Rfer_3124 Cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D Rfer_1909 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D Rfer_2234 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D Rfer_0574 OsmC-like protein K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D Rfer_3855 nickel-dependent hydrogenase, large subunit K00436 hoxH; NAD-reducing hydrogenase large subunit [EC:1.12.1.2]
D Rfer_3858 Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K18005 hoxF; [NiFe] hydrogenase diaphorase moiety large subunit [EC:1.12.1.2]
D Rfer_3857 Hydrogen dehydrogenase K18006 hoxU; [NiFe] hydrogenase diaphorase moiety small subunit [EC:1.12.1.2]
D Rfer_3856 NADH ubiquinone oxidoreductase, 20 kDa subunit K18007 hoxY; NAD-reducing hydrogenase small subunit [EC:1.12.1.2]
D Rfer_0805 Pirin-like K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Rfer_2575 Pirin-like K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D Rfer_1548 amine oxidase K21677 hpnE; hydroxysqualene dehydroxylase [EC:1.17.8.1]
D Rfer_0084 Ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D Rfer_3666 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D Rfer_0396 Radical SAM K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D Rfer_3292 NADH dehydrogenase (quinone) K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D Rfer_3290 hydrogenase 4 membrane component K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D Rfer_3278 hypothetical protein K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D Rfer_3289 NADH dehydrogenase (quinone) K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D Rfer_3279 NADH/Ubiquinone/plastoquinone (complex I) K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D Rfer_2602 Protein-L-isoaspartate(D-aspartate) O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Rfer_2781 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D Rfer_2417 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Rfer_0826 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D Rfer_1421 thiopurine S-methyltransferase K21552 HOL; methyl halide transferase [EC:2.1.1.165]
D Rfer_2770 3-oxoacyl-(acyl-carrier protein) synthase K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D Rfer_3697 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D Rfer_3784 GCN5-related N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D Rfer_3403 GCN5-related N-acetyltransferase K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D Rfer_2349 Leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D Rfer_2531 transglutaminase-like K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D Rfer_2348 Arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D Rfer_0675 glycosyl transferase, group 1 K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D Rfer_1848 Triphosphoribosyl-dephospho-CoA synthase K13930 mdcB; triphosphoribosyl-dephospho-CoA synthase [EC:2.4.2.52]
D Rfer_3956 DTW K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D Rfer_1923 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D Rfer_3196 ApbE-like lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D Rfer_0445 type III effector Hrp-dependent outers K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D Rfer_3566 conserved hypothetical protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D Rfer_2190 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D Rfer_1544 Polyphosphate:AMP phosphotransferase K23753 ppk2; AMP-polyphosphate phosphotransferase [EC:2.7.4.33]
D Rfer_0367 Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D Rfer_1847 malonate decarboxylase K13934 mdcG; phosphoribosyl-dephospho-CoA transferase [EC:2.7.7.66]
D Rfer_2395 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D Rfer_3840 (Isocitrate dehydrogenase (NADP+)) kinase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D Rfer_0752 Hpr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D Rfer_2745 L-carnitine dehydratase/bile acid-inducible protein F K07749 frc; formyl-CoA transferase [EC:2.8.3.16]
D Rfer_2141 thioesterase superfamily K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rfer_1529 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rfer_3014 thioesterase superfamily K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D Rfer_3236 PHP-like K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D Rfer_2018 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D Rfer_0055 metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Rfer_3329 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D Rfer_3221 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Rfer_2258 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D Rfer_1306 nuclease (SNase-like) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D Rfer_0149 N-carbamoyl-D-amino acid hydrolase K01459 E3.5.1.77; N-carbamoyl-D-amino-acid hydrolase [EC:3.5.1.77]
D Rfer_0157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K01459 E3.5.1.77; N-carbamoyl-D-amino-acid hydrolase [EC:3.5.1.77]
D Rfer_0927 dihydroorotase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D Rfer_0978 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81]
D Rfer_2202 Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Rfer_3860 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D Rfer_0849 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D Rfer_1726 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D Rfer_2529 AAA_3 ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D Rfer_2404 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D Rfer_1763 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D Rfer_0052 protein of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D Rfer_1845 acetyl-CoA carboxylase beta subunit K13932 mdcD; malonate decarboxylase beta subunit [EC:4.1.1.87]
D Rfer_1846 malonate decarboxylase gamma subunit K13933 mdcE; malonate decarboxylase gamma subunit [EC:4.1.1.87]
D Rfer_0444 class II aldolase/adducin-like K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D Rfer_1027 Galactarate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5]
D Rfer_0843 mandelate racemase/muconate lactonizing enzyme K22209 tarD; D(-)-tartrate dehydratase [EC:4.2.1.81]
D Rfer_1984 protein of unknown function UPF0031 K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D Rfer_0159 Diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D Rfer_1900 RbsD or FucU transport K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D Rfer_3138 conserved hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D Rfer_0443 Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D Rfer_3612 methylmalonyl-CoA mutase K11942 icmF; isobutyryl-CoA mutase [EC:5.4.99.13]
D Rfer_0273 AMP-dependent synthetase and ligase K12508 fcs; feruloyl-CoA synthase [EC:6.2.1.34]
D Rfer_1314 Cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D Rfer_1315 Cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D Rfer_3356 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D Rfer_1436 ATP dependent DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D Rfer_2341 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D Rfer_1927 Heavy metal translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D Rfer_0492 ATPase, E1-E2 type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Rfer_1665 ATPase, E1-E2 type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D Rfer_0854 Heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D Rfer_0493 Magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D Rfer_0125 periplasmic binding protein/LacI transcriptional regulator K11930 torT; periplasmic protein TorT
D Rfer_0201 protein of unknown function DUF224, cysteine-rich protein K18928 lldE; L-lactate dehydrogenase complex protein LldE
D Rfer_0199 Iron-sulfur cluster binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D Rfer_0200 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D Rfer_3256 formate dehydrogenase, subunit FdhD K02379 fdhD; FdhD protein
D Rfer_2182 Ferredoxin, 2Fe-2S type K04755 fdx; ferredoxin, 2Fe-2S
D Rfer_0299 ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D Rfer_2461 4Fe-4S ferredoxin, iron-sulfur binding K05524 fdxA; ferredoxin
D Rfer_4143 4Fe-4S ferredoxin, iron-sulfur binding K05524 fdxA; ferredoxin
D Rfer_2178 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D Rfer_1864 SUF system FeS assembly protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D Rfer_3489 Citrate utilization protein B K13795 citB; citrate/tricarballylate utilization protein
D Rfer_0620 Citrate utilization protein B K13795 citB; citrate/tricarballylate utilization protein
D Rfer_3488 Precorrin 3B synthase CobZ K13796 cobZ; tricarballylate dehydrogenase
D Rfer_4075 NapC/NirT cytochrome c-like K02569 napC; cytochrome c-type protein NapC
D Rfer_4076 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC
D Rfer_4166 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D Rfer_1957 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit
D Rfer_1437 protein of unknown function DUF1458 K09165 K09165; dodecin
D Rfer_2825 protein of unknown function DUF1458 K09165 K09165; dodecin
C 99983 Lipid metabolism
D Rfer_0523 acyl-CoA dehydrogenase-like K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D Rfer_3879 Protein of unknown function UPF0001 K06997 yggS; PLP dependent protein
D Rfer_1590 GCN5-related N-acetyltransferase K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D Rfer_1564 conserved hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D Rfer_1563 putative transmembrane protein K19804 lapB; lipopolysaccharide assembly protein B
D Rfer_3618 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D Rfer_1718 Uncharacterized enzyme of heme biosynthesis-like K02498 hemY; HemY protein
D Rfer_1294 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D Rfer_0428 unusual protein kinase-like K03688 ubiB; ubiquinone biosynthesis protein
D Rfer_1293 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D Rfer_0134 conserved hypothetical protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D Rfer_1914 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D Rfer_3089 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D Rfer_2368 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
D Rfer_3495 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D Rfer_1605 DoxX K15977 K15977; putative oxidoreductase
D Rfer_0915 DoxX K15977 K15977; putative oxidoreductase
D Rfer_2574 DoxX K15977 K15977; putative oxidoreductase
D Rfer_2535 DoxX K15977 K15977; putative oxidoreductase
D Rfer_1674 Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D Rfer_2537 phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
D Rfer_0007 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase
D Rfer_2352 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D Rfer_0472 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D Rfer_2483 RNA binding S1 K06959 tex; protein Tex
C 99974 Translation
D Rfer_0170 response regulator receiver domain protein K13926 rbbA; ribosome-dependent ATPase
D Rfer_1967 beta-lactamase-like K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D Rfer_2760 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D Rfer_1553 trigger factor K03545 tig; trigger factor
D Rfer_2915 Ferric reductase-like transmembrane component-like K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D Rfer_3406 UreE urease accessory-like K03187 ureE; urease accessory protein
D Rfer_3407 Urease accessory protein UreF K03188 ureF; urease accessory protein
D Rfer_3408 urease accessory protein UreG K03189 ureG; urease accessory protein
D Rfer_3376 Urease accessory protein UreD K03190 ureD; urease accessory protein
D Rfer_4087 HupE/UreJ protein K03192 ureJ; urease accessory protein
D Rfer_2546 SsrA-binding protein K03664 smpB; SsrA-binding protein
D Rfer_4093 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC
D Rfer_4098 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC
D Rfer_4099 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D Rfer_4100 Hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D Rfer_4097 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D Rfer_0471 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
D Rfer_1831 conserved hypothetical protein K07395 K07395; putative proteasome-type protease
D Rfer_0732 OsmC-like protein K07397 yhfA; putative redox protein
D Rfer_0866 protein of unknown function DUF182 K07402 xdhC; xanthine dehydrogenase accessory factor
D Rfer_2149 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D Rfer_3252 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D Rfer_2166 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC
D Rfer_3873 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D Rfer_3862 DNA processing protein DprA, putative K04096 smf; DNA processing protein
D Rfer_3176 Recombination protein MgsA K07478 ycaJ; putative ATPase
D Rfer_1360 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D Rfer_4271 conserved hypothetical protein K06919 K06919; putative DNA primase/helicase
D Rfer_0942 transposase, IS4 family K07481 K07481; transposase, IS5 family
D Rfer_2276 transposase, IS4 family K07481 K07481; transposase, IS5 family
D Rfer_1173 transposase IS3/IS911 K07483 K07483; transposase
D Rfer_3061 transposase IS3/IS911 K07483 K07483; transposase
D Rfer_2709 transposase IS3/IS911 K07483 K07483; transposase
D Rfer_1170 transposase IS66 K07484 K07484; transposase
D Rfer_1172 IS66 Orf2 like K07484 K07484; transposase
D Rfer_3059 transposase IS66 K07484 K07484; transposase
D Rfer_3060 IS66 Orf2 like K07484 K07484; transposase
D Rfer_2710 IS66 Orf2 like K07484 K07484; transposase
D Rfer_2711 transposase IS66 K07484 K07484; transposase
D Rfer_1171 transposase IS116/IS110/IS902 K07486 K07486; transposase
D Rfer_2519 Transposase and inactivated derivatives-like K07486 K07486; transposase
D Rfer_2266 transposase IS116/IS110/IS902 K07486 K07486; transposase
D Rfer_4212 Transposase and inactivated derivatives-like K07486 K07486; transposase
D Rfer_2433 transposase, IS4 family K07487 K07487; transposase
D Rfer_2932 protein of unknown function DUF1568 K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
D Rfer_1458 conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D Rfer_0379 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Rfer_2601 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D Rfer_1399 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D Rfer_2107 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D Rfer_1465 anion transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D Rfer_0923 anion transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D Rfer_0015 anion transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
C 99978 Cell growth
D Rfer_2397 intracellular septation protein A K06190 ispZ; intracellular septation protein
D Rfer_2215 SpoVR K06415 spoVR; stage V sporulation protein R
C 99993 Cell motility
D Rfer_3473 regulator of competence-specific genes K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D Rfer_2451 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D Rfer_2137 GTP-binding protein TypA K06207 typA; GTP-binding protein
D Rfer_0738 PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D Rfer_1908 PhoH-like protein K07175 phoH2; PhoH-like ATPase
D Rfer_2217 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase
D Rfer_3783 cyclic nucleotide-binding domain (cNMP-BD) protein K07182 K07182; CBS domain-containing protein
D Rfer_2692 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D Rfer_3177 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D Rfer_1658 putative outer membrane lipoprotein K02494 lolB; outer membrane lipoprotein LolB
D Rfer_2938 VacJ-like lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D Rfer_2931 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D Rfer_0072 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D Rfer_4272 outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D Rfer_1997 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Rfer_3819 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D Rfer_2780 peptidase M23B K06194 nlpD; lipoprotein NlpD
D Rfer_0319 OmpW K07275 ompW; outer membrane protein
D Rfer_0194 OmpW K07275 ompW; outer membrane protein
D Rfer_0079 AsmA K07289 asmA; AsmA protein
D Rfer_0169 secretion protein HlyD K01993 ABC-2.TX; HlyD family secretion protein
D Rfer_1702 Secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein
D Rfer_3185 secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein
D Rfer_1940 Secretion protein HlyD K02005 ABC.CD.TX; HlyD family secretion protein
D Rfer_0070 17 kDa surface antigen K04062 osmB; osmotically inducible lipoprotein OsmB
D Rfer_0041 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D Rfer_0037 Tetratricopeptide TPR_2 K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D Rfer_0038 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D Rfer_2308 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D Rfer_0579 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D Rfer_2785 periplasmic glucan biosynthesis protein, MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D Rfer_0141 Phosphonate C-P lyase system, PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein
D Rfer_0531 ApaG K06195 apaG; ApaG protein
D Rfer_2917 Frataxin-like K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D Rfer_1451 Hemerythrin-like, metal-binding K07216 hr; hemerythrin
D Rfer_3200 periplasmic copper-binding K07218 nosD; nitrous oxidase accessory protein
D Rfer_2870 transcriptional regulator of molybdate metabolism, LysR family K07219 K07219; putative molybdopterin biosynthesis protein
D Rfer_1884 NnrS K07234 K07234; uncharacterized protein involved in response to NO
D Rfer_4151 NnrS K07234 K07234; uncharacterized protein involved in response to NO
D Rfer_0463 DsrE-like protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
D Rfer_3203 NosL K19342 nosL; copper chaperone NosL
D Rfer_3206 putative lipoprotein involved in nitrous oxide reduction K19342 nosL; copper chaperone NosL
D Rfer_3207 conserved hypothetical protein K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D Rfer_2684 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D Rfer_2489 GCN5-related N-acetyltransferase K02348 elaA; ElaA protein
D Rfer_1446 transport-associated K04065 osmY; hyperosmotically inducible periplasmic protein
D Rfer_0073 transport-associated K04065 osmY; hyperosmotically inducible periplasmic protein
D Rfer_2343 transport-associated K04065 osmY; hyperosmotically inducible periplasmic protein
D Rfer_2228 globin K06886 glbN; hemoglobin
D Rfer_4128 conserved hypothetical protein K06886 glbN; hemoglobin
D Rfer_3254 globin K06886 glbN; hemoglobin
D Rfer_1852 Patatin K07001 K07001; NTE family protein
D Rfer_0361 Patatin K07001 K07001; NTE family protein
D Rfer_0908 Patatin K07001 K07001; NTE family protein
D Rfer_2026 Patatin K07001 K07001; NTE family protein
D Rfer_3273 Patatin K07001 K07001; NTE family protein
D Rfer_2062 Patatin K07001 K07001; NTE family protein
D Rfer_3528 Patatin K07001 K07001; NTE family protein
D Rfer_1128 HAD-superfamily hydrolase subfamily IA, variant 3 K07025 K07025; putative hydrolase of the HAD superfamily
D Rfer_0725 HesB/YadR/YfhF K15724 erpA; iron-sulfur cluster insertion protein
D Rfer_1860 Iron-regulated ABC transporter membrane component SufB K09014 sufB; Fe-S cluster assembly protein SufB
D Rfer_1862 Iron-regulated ABC transporter permease protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D Rfer_4474 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D Rfer_1669 ribonuclease BN, putative K07058 K07058; membrane protein
D Rfer_2991 tRNA-processing RNAse BN K07058 K07058; membrane protein
D Rfer_0394 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D Rfer_1961 Rhodanese-like K07146 K07146; UPF0176 protein
D Rfer_4110 3-demethylubiquinone-9 3-methyltransferase K04750 phnB; PhnB protein
D Rfer_2775 protein of unknown function DUF336 K11477 glcG; glc operon protein GlcG
D Rfer_0102 LemA K03744 lemA; LemA protein
D Rfer_1419 SlyX K03745 slyX; SlyX protein
D Rfer_3863 protein of unknown function DUF494 K03747 smg; Smg protein
D Rfer_0326 CreA K05805 creA; CreA protein
D Rfer_2685 Sporulation related K03749 dedD; DedD protein
D Rfer_3305 DedA protein (DSG-1 protein) K03975 dedA; membrane-associated protein
D Rfer_2723 membrane protein of unknown function K08972 K08972; putative membrane protein
D Rfer_4042 membrane protein of unknown function K08972 K08972; putative membrane protein
D Rfer_3964 conserved hypothetical protein K09858 K09858; SEC-C motif domain protein
D Rfer_3747 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D Rfer_2259 Ankyrin K06867 K06867; uncharacterized protein
D Rfer_3828 Radical SAM K06871 K06871; uncharacterized protein
D Rfer_0103 protein of unknown function DUF477 K06872 K06872; uncharacterized protein
D Rfer_1129 bem46 protein K06889 K06889; uncharacterized protein
D Rfer_0694 esterase/lipase/thioesterase family active site K06889 K06889; uncharacterized protein
D Rfer_0323 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D Rfer_2909 protein of unknown function DUF815 K06923 K06923; uncharacterized protein
D Rfer_0747 CoA-binding K06929 K06929; uncharacterized protein
D Rfer_0027 protein of unknown function DUF296 K06934 K06934; uncharacterized protein
D Rfer_4045 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D Rfer_0282 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Rfer_4338 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D Rfer_1522 Succinylglutamate desuccinylase/aspartoacylase K06987 K06987; uncharacterized protein
D Rfer_0383 glyoxalase K06996 K06996; uncharacterized protein
D Rfer_3375 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D Rfer_0497 oxidoreductase FAD/NAD(P)-binding K07006 K07006; uncharacterized protein
D Rfer_1782 conserved hypothetical protein K07028 K07028; uncharacterized protein
D Rfer_0391 conserved hypothetical protein K07028 K07028; uncharacterized protein
D Rfer_0804 YgfB K07039 K07039; uncharacterized protein
D Rfer_0275 amidohydrolase 2 K07045 K07045; uncharacterized protein
D Rfer_2725 protein of unknown function, zinc metallopeptidase putative K07054 K07054; uncharacterized protein
D Rfer_3510 fumarate reductase/succinate dehydrogenase flavoprotein-like K07077 K07077; uncharacterized protein
D Rfer_1040 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein
D Rfer_1635 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein
D Rfer_3641 permease K07089 K07089; uncharacterized protein
D Rfer_1586 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Rfer_2455 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Rfer_1450 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Rfer_3919 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Rfer_2250 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Rfer_2628 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D Rfer_2020 Twin-arginine translocation pathway signal K07093 K07093; uncharacterized protein
D Rfer_1390 phosphoesterase, DHHA1 K07097 K07097; uncharacterized protein
D Rfer_2295 phosphoribosyltransferase K07101 K07101; uncharacterized protein
D Rfer_1810 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein
D Rfer_1811 protein of unknown function DUF395, YeeE/YedE K07112 K07112; uncharacterized protein
D Rfer_3954 nuclear protein SET K07117 K07117; uncharacterized protein
D Rfer_0066 putative ammonia monooxygenase K07120 K07120; uncharacterized protein
D Rfer_0308 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein
D Rfer_0310 short-chain dehydrogenase/reductase SDR K07124 K07124; uncharacterized protein
D Rfer_1266 Sel1-like K07126 K07126; uncharacterized protein
D Rfer_3461 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein
D Rfer_4117 conserved hypothetical protein K07139 K07139; uncharacterized protein
D Rfer_1828 peptidase S16, lon-like K07157 K07157; uncharacterized protein
D Rfer_4243 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D Rfer_2763 protein of unknown function DUF192 K09005 K09005; uncharacterized protein
D Rfer_2886 GatB/Yqey K09117 K09117; uncharacterized protein
D Rfer_0749 protein of unknown function DUF167 K09131 K09131; uncharacterized protein
D Rfer_0397 AMMECR1 K09141 K09141; uncharacterized protein
D Rfer_3936 protein of unknown function DUF493 K09158 K09158; uncharacterized protein
D Rfer_1709 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D Rfer_2772 protein of unknown function DUF808 K09781 K09781; uncharacterized protein
D Rfer_2216 protein of unknown function DUF444 K09786 K09786; uncharacterized protein
D Rfer_2579 protein of unknown function DUF454 K09790 K09790; uncharacterized protein
D Rfer_3156 protein of unknown function DUF343 K09791 K09791; uncharacterized protein
D Rfer_1939 conserved hypothetical protein K09792 K09792; uncharacterized protein
D Rfer_2290 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein
D Rfer_2372 protein of unknown function DUF328 K09861 K09861; uncharacterized protein
D Rfer_2907 protein of unknown function DUF329 K09862 K09862; uncharacterized protein
D Rfer_1648 protein of unknown function DUF480 K09915 K09915; uncharacterized protein
D Rfer_0114 protein of unknown function DUF482 K09919 K09919; uncharacterized protein
D Rfer_3443 conserved hypothetical protein K09921 K09921; uncharacterized protein
D Rfer_3193 hypothetical protein K09924 K09924; uncharacterized protein
D Rfer_1935 hypothetical protein K09926 K09926; uncharacterized protein
D Rfer_4021 conserved hypothetical protein K09927 K09927; uncharacterized protein
D Rfer_1607 protein of unknown function DUF692 K09930 K09930; uncharacterized protein
D Rfer_1624 conserved hypothetical protein K09931 K09931; uncharacterized protein
D Rfer_2298 conserved hypothetical protein K09937 K09937; uncharacterized protein
D Rfer_2929 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein
D Rfer_0494 protein of unknown function DUF1508 K09946 K09946; uncharacterized protein
D Rfer_1758 conserved hypothetical protein K09954 K09954; uncharacterized protein
D Rfer_4156 protein of unknown function DUF886 K09975 K09975; uncharacterized protein
D Rfer_0847 conserved hypothetical protein K09983 K09983; uncharacterized protein
D Rfer_1591 conserved hypothetical protein K09989 K09989; uncharacterized protein
D Rfer_1398 protein of unknown function DUF47 K07220 K07220; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: April 26, 2024