+E Transcription factors KO #

  Transcription Factors - Ralstonia pseudosolanacearum GMI1000

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D RSc3438 probable site-specific dna methylase protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D RSc0869 putative bacteriophage cytosine-specific methyltransferase protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D RSc0132 probable transcription regulator protein K13652 K13652; AraC family transcriptional regulator D RSp1247 probable transcription regulator protein K13652 K13652; AraC family transcriptional regulator D RSp1157 probable transcription regulator protein K07506 K07506; AraC family transcriptional regulator D RSc2570 ada; probable ada regulatory of adaptative response contains: methylated-dna--protein-cysteine methyltransferase ec 2.1.1.63 o-6-methylguanine-dna transcription regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RSc2566 putative methylated-dna--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RSc2505 putative transcription regulator protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D RSp0054 probable transcriptional regulator transcription regulator protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D RSp0068 probable transcriptional regulator transcription regulator protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D RSc1108 probable transcriptional regulatory dna-binding transcription regulator protein K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D RSc2761 probable transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RSc0325 probable transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RSp0434 probable transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RSp0912 probable transcriptional regulator transcription regulator protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D RSp0677 metR; putative transcriptional activator metr transcription regulator protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D RSc2690 oxyR; probable hydrogen peroxide-inducible genes activator transcription regulator protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D RSc2427 cysB2; putative cys regulon transcriptional activator-related transcription regulator protein K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D RSc1348 cysB1; putative cys regulon transcriptional activator transcription regulator protein K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D RSp0997 probable transcription regulator protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D RSp1110 probable transcription regulator protein K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D RSp0942 nac; probable nitrogen assimilation regulatory transcription regulator protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D RSc2748 phcA; hth-type transcriptional regulator phca (virulence genestranscriptional regulator phca). transcription regulator protein K19624 phcA; LysR family transcriptional regulator, virulence genes transcriptional regulator D RSc0479 putative transcription regulator protein K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT C DeoR family D RSc3044 glpR; probable glycerol-3-phosphate regulon repressor transcription regulator protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D RSc1014 probable transcriptional regulatory dna-binding repressor transcription regulator protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RSp1637 probable transcription regulator transcription regulator protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D RSc2860 fruR; putative transcription regulation repressor transcription regulator protein K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D RSp1286 scrR; putative dna-binding sucrose operon transcriptional repressor transcription regulator protein K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor D RSp1616 probable transcription regulator transcription regulator protein K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D RSc2648 hutC; probable histidine utilization repressor transcription regulator protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D RSc1997 probable transcription regulator protein K03710 K03710; GntR family transcriptional regulator D RSp0336 probable transcription regulator protein K03710 K03710; GntR family transcriptional regulator D RSp0079 putative dna-binding transcriptional regulatory transcription regulator protein K03710 K03710; GntR family transcriptional regulator D RSp1506 probable transcription regulator protein K03710 K03710; GntR family transcriptional regulator D RSc0030 putative transcription regulator protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D RSc3119 probable transcription regulator protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D RSc0012 acrR; putative acrab operon repressor transcription regulator protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D RSp0816 probable transcription regulator protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D RSc0031 probable transcription regulator protein K05501 slmA; TetR/AcrR family transcriptional regulator D RSc1201 probable transcription regulator protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family D RSc0927 lrp; probable leucine-responsive regulatory dna-binding transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSc2318 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSc2801 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSc3102 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSc0128 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSc2320 conserved hypothetical protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSp1317 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSp1348 probable transcription regulator protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D RSp1377 probable transcription regulator protein K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon C LuxR family D RSc3287 solR; transcriptional activator solr. transcription regulator protein K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR C MarR family D RSp0386 putative transcription regulator protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D RSp1106 putative transcription regulator protein K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D RSc3347 probable transcription regulator protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D RSc0048 putative transcription regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RSc2747 fur1; probable ferric uptake transcriptional repressor transcription regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D RSp0247 fur2; probable ferric uptake transcriptional (fur)-related transcription regulator protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family D RSc2255 probable transcription regulator protein K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein C CRP/FNR family D RSp0805 putative transcription regulator protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D RSc1283 fnr; putative fumarate and nitrate reduction regulatory transcription regulator protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D RSc0190 probable transcription regulator protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D RSp0966 probable transcription regulator protein K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D RSc1018 putative of unknown function upf0074; transcription regulator protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D RSc3397 putative of unknown function upf0074; transcription regulator protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D RSp1129 arsR; putative arsenical resistance operon repressor transcription regulator protein K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D RSp1556 hexR; putative transcription regulation repressor hexr transcription regulator protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D RSc0312 birA; putative bifunctional protein: biotin operon repressor and biotin--[acetyl-coa-carboxylase] synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D RSc0505 fis; putative fis-like dna-binding. transcription regulator protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D RSp0123 prpR; putative propionate catabolism operon regulatory transcription regulator protein K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D RSp1252 hipB; putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D RSc1447 putative transcription regulator protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D RSc3129 acoR; putative acetoin catabolism regulatory transcription regulator protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D RSp0959 probable sigma-54 interacting transcription regulator protein K12266 norR; anaerobic nitric oxide reductase transcription regulator D RSp1153 putative transcription regulator protein K02019 modE; molybdate transport system regulatory protein D RSc0125 putative lambda repressor-like; transcription regulator protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D RSc3301 putA; probable bifunctional: proline dehydrogenase and proline oxidase delta-1-pyrroline-5-carboxylate dehydrogenase transcription regulator protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D RSp1369 nosR; probable transmembrane regulatory nosr transcription regulator protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D RSp0553 hypothetical protein of unknown function duf156 K23240 rcnR; FrmR/RcnR family transcriptional regulator, repressor of rcnA expression D RSc1745 putative transcription regulator protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D RSc3325 parB2; putative chromosome partitioning protein parb K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RSp0004 parB; putative partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RSc2617 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D RSc2649 hrcA; probable heat-inducible transcription repressor hrca. transcription regulator protein K03705 hrcA; heat-inducible transcriptional repressor D RSc2636 rnk; putative regulator of nucleoside diphosphate kinase transcription regulator protein K06140 rnk; regulator of nucleoside diphosphate kinase D RSc0677 pyrR; putative pyrr bifunctional protein [includes: pyrimidine operon regulatoryprotein; uracil phosphoribosyltransferase (uprtase)]. K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D RSc0962 putative bacteriophage dna-binding transcription regulator protein K07733 alpA; prophage regulatory protein D RSc1897 probable prophage regulatory transcription regulator protein K07733 alpA; prophage regulatory protein D RSp0689 probable negative transcriptional regulator transcription regulator protein K07734 paiB; transcriptional regulator D RSc0675 cog1678, putative transcriptional regulator protein K07735 algH; putative transcriptional regulator D RSc0046 dksA; putative dnak suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D RSc0728 putative transcriptional regulator protein K07738 nrdR; transcriptional repressor NrdR D RSc0222 rtcR; probable sigma-54 interacting transcription regulator protein K14414 rtcR; transcriptional regulatory protein RtcR D RSp1003 xpsR; transcription regulator xpsr transcription regulator protein K19667 xpsR; transcriptional activator of eps genes D RSc2853 hypothetical protein mraz. K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0